RNA id: XM_026912723.2


Basic Information

Item Value
RNA id XM_026912723.2
length 2485
RNA type mRNA
GC content 0.47
exon number 1
gene id sox14
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18688598 ~ 18691082 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCTGCCGTTTATGTGCAGCCCAGCCTTTCAACTCCGCCGCCTTTTGGCTTCCATTCACGAGCTTTTTCTACTCATTTCCTAAGCCAGGTGCTTCGCAAAAGACGACAAACCTCCGAGAGggaagagaaaacacacacacgtacgcatacacacacgcacatacacacacacacacacgcagacagacacacacaaacacccagaGTTCACTCGTCGACCACGGGACTTTTTTGCCTCACCTCGGCGGATTTTTGGCAGCTGCACACTGGGTGTTGAAGAGGAAAGAAACATTTATAACCATTTGCTGAAACTCGTAAGAGTTGCGCGGTTGGATTTTTTCACCGATGCCTTTTTCACAGTTCTTCTCCGACTCTCCAGAAGTGGCATGATCGGCGTCCGTCAGCAAGACAGGTGAATTATTTCCTCCACTCGGTTTTGGTGGCATAAACATTTTGACGTTATTTTACTTGGACTGAACGGTGTGCGTGTCGCTTAACAAAGCCATGTCCAAGCCGGCCGATCACATCAAGAGACCCATGAACGCCTTCATGGTATGGTCCCGCGGCCAGAGGAGGAAAATGGCCCAAGAGAATCCCAAGATGCACAACTCTGAGATCAGCAAGAGGCTCGGTGCCGAGTGGAAGCTTCTCTCCGAGGCTGAGAAGCGGCCCTACATTGACGAGGCCAAGCGGCTGCGCGCGCAGCACATGAAAGAGCACCCGGACTACAAGTACCGGCCGCGGCGCAAGCCCAAGAACCTGCTCAAGAAGGACCGATATGTGTTCCCGCTGCCCTACTTGGGCGACGCTGAACACTTGAAAGCACTTCCGGTTTCCGGTGCCGACTCGTTGTTGGCTTCCGGGCCGGAAAAAGCTCGCGCGTTCTTGCCGCCGGCGGCCTCTGCACCCTACTCGTTCCTTGACCCAAGTCAGTTCGGCTCCAGCGCTGCGCAGAAGATGGCCGATATGCCACACGCTCTTGCCGCCGCCGCCGCTGGCTCGCTGCCCTACGCCTCCTCACTCGGCTACCAGAACGGCGCGTTTGGCGGCCTGGCGTGTCCggggcagcacacacacacccacccgtCACCCACCAACCCGGGCTATGTAGTGCCCTGCAACTGCACAGCGTGGTCAGCGGCGTCCAGCCTGCAGCCCCCCGTCGCCTACATCCTGTTTCCGGGCATGGGTAAGAGCGGCATCGACCCGTACCCCACAGCGCACGCCACGGCCATGTAAAATAACACCTAAAGTCGAGCAGAGGGACAGTTTTTACTTTGGAAACTTGAACCACGTAAAacacatactctcacacacgAAGTTACAAGAGCAAACAGACAGTCGGGCTCTCCGAAAACTTCTACCATGTTCAAACAAAAGACGTTTCTGCCTGGAAACTTTAACgatgtaaaataaatcagttaataaattaattaatagccACGCAGTTAGAGGGTGTTCAGCGCACAAGAAAACTCCACGGAACCTTCAGTGAGGTTACCCTccgaaaaaagagggaaaagacaactttttttttttttttggaaacttgaataatgttaaagaaaaaaaaacaacaggtcATATAAACAGTTGTAAAGCAGCCAAAAGCCGCTGCTGCTCTTTGAAAACTTGAAGCGCGTGAAGTGACCCAGGTGTCCCTGTCTGCAAGCCTGACCTCTGCTGCATCATGCCACCAGGCACAAGTGCAAAGCTCACTGTGTAGAGGCCGTGAGGACTTTCAGAACTGGAGAAAAACTTTCAGTGTTTTCATCATGCCCGTTTTTTCCCTCTGGACCTCTGCATGGGAACTTGGGAGTAGATGTGAGAGATCAAGGAGCCCTGAACtgtaagaaatgtaaatgttataacatttattaacgGCTATCCGATTAAGGATGcctttaactttatttattatgtacatttttgatgctatactaataataattttgtttcatgatattattattattgttatcttATTTTAAAGGCCCATTTGGTTTGCACAAGTGACACTCATCCTTCATATCTCTTGTATATTGTACTTATATTTTAGCACTCAGATAAACTGGCTTGGATCACGCTTAGAACTTTTTGAGTTGGATGAACATACGGGTTATATTGTTTATAGGCTATTTATCAAACCGGTGCATAAAATTAGACAACTATTTAAAAcatcaagtggaaaaaaaaaatatctttttaacatttttcttttctttttttttttttcaaattgtggTTCAGCGCTAGTCACGTTCAATTCATCTGAGGAAGAAGGAGCTGGAGTTTGAAGCGAAGCAGTTAATGTTGTGGttttattatgatgattattattatttttcaactGCGATGGTAATTTAAAAGCTGTACTAATGTTATGGAAAGGAAGATGTATCCAAATGGGTGATACCTCGATTCTTTGTTCATTTGCCTGAGCAAAGACATTTTGAATAAAGACAATCTGTCTTCAAAATTATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34839 lncRNA downstream 54241 18634078 ~ 18634357 (-) True G29551
TU34830 lncRNA downstream 72724 18614869 ~ 18615874 (-) True G29542
TU34829 lncRNA downstream 73874 18614357 ~ 18614724 (-) True G29541
TU34718 lncRNA downstream 235622 18452468 ~ 18452976 (-) True G29439
TU34596 lncRNA downstream 539849 18148228 ~ 18148749 (-) False zgc:153916
XR_004579394.1 lncRNA upstream 102943 18794025 ~ 18816812 (-) True LOC113537624
XR_004579395.1 lncRNA upstream 102943 18794025 ~ 18807890 (-) False LOC113537624
XR_003403788.2 lncRNA upstream 102943 18794025 ~ 18806448 (-) False LOC113537624
XR_004579393.1 lncRNA upstream 102943 18794025 ~ 18806416 (-) False LOC113537624
XR_004579390.1 lncRNA upstream 102943 18794025 ~ 18806350 (-) False LOC113537624
XM_026927315.2 mRNA downstream 64990 18615977 ~ 18623608 (-) True LOC113534471
XM_026916472.2 mRNA downstream 102372 18502917 ~ 18586226 (-) False hs2st1b
XM_026916382.2 mRNA downstream 102836 18501538 ~ 18585762 (-) True hs2st1b
XM_026920882.2 mRNA downstream 224027 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA downstream 224027 18449257 ~ 18464571 (-) True lmo4b
XM_034312132.1 mRNA upstream 128975 18820057 ~ 18835789 (-) True hdlbpa
XM_026927091.2 mRNA upstream 225543 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 266691 18957773 ~ 18961671 (-) True dtymk
XM_034310739.1 mRNA upstream 273209 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA upstream 273211 18964293 ~ 18969447 (-) False agxta
trnae-cuc_6 other downstream 111303 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 615689 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 738880 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 1159283 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1408425 17272955 ~ 17280173 (-) True G29158
TU34886 other upstream 102950 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 125177 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 126045 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 689359 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 695360 19386442 ~ 19386513 (-) True trnap-cgg_1

Expression Profile