RNA id: XM_034312653.1


Basic Information

Item Value
RNA id XM_034312653.1
length 1620
RNA type mRNA
GC content 0.41
exon number 8
gene id gnat1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8569347 ~ 8574762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATGTTTCCACTACAGAATTATCCACAAAGATGGTTACTCCCTAGAAGAGTGCCTGGAGTTCATTTCTATCATCTACAGCAACACCTTGCAGTCGATCATGGCTATTGTAAAGGCTATGAACACGCTCAACATTAGCTACGGAGATGCTGCCCAGCAGGACAATGCCAGGAAGCTGATGCACTTAGCTGACACTATTGAAGAGGGCACCATGCCCAAGGAGCTGTCTGATATTATCCTGCAGTTGTGGAAAGATACTGGGATCCAAGCATGCTTCGACAGGGCCTCGGAATACCAGCTCAACGACTCTGCTGGATACTATTTAAATGATTTGGAAAGGTTGATCCAGCCTGGCTATGTCCCCACTGAGCAGGATGTACTGAGATCTCGAGTTAAGACAACTGGTATCATTGAGACCCAGTTTTCCTTCAAGGACCTCAACTTCAGGATGTTTGACGTAGGAGGCCAGCgctcagagagaaagaaatggatcCACTGCTTTGAAGGCGTTACCTGCATCATCTTCATTGCTGCTCTGAGTGCTTATGACATGGTGCTGGTGGAGGATGATGAAGTGAACCGAATGCACGAGAGTCTCCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCTACTACTTCCATTGTACTCTTCCTCAACAAGAAAGATGTCTTCCTTGAGAAGATCAAGAAGGCCCATTTAAGCATGTGCTTCCCTGAATATGATGGACCAAACACATATGAAGATGCTGGTAACTACATCAAGGTGCAGTTCTTGGACCTGAACATGCGGCGAGACGTCAAAGAAATCTACTCGCACATGACTTGTGCTACAGACACTGAGAACGTGAAGTTTGTGTTCGATGCCGTAACAGACATTATCATCAAAGAAAACCTCAAGGACTGTGGTCTCTTTTAAGCACGTCCATGCCTGAGAAAAGGCATGGAGAGCACctatattttctctttctccaagATGACAAGTATTCTCAATTTCACAGAAACACCTAGAACCTATAAAGAGGAACTGGTATAtactgctgctaatgtcttttCTAATTCCAACTGAATACCATAGAAAGATGCTGCACAGTCACATGGTCCCACTAGTGTCTTACAGTAAAGGAATACAATTATAGCAGCATTTTATCAGCTGCACAATGAGACAGAAACGCTCTTTTGAAATGTTAGCTTCTCACAGATTACAGGAGTTTGGATTACGTGATTCAGCTCTTATAATTTCATGCAGTGTTCTATATCTTAGTCTCTGATTTTGGTGCATGGTATCTTTTAAAACACCTGCATATgcacttcattaaaaaaattcaatctaAAACATAGCTACATATGTTGTATTGCATGCAGCACATGTCATACTTATTGGCTTATAAGTATTTCCCATTTTCAGTGATGTACTTGAATGCAATGCCCATCGACCAGATTGACAAAAAGATGAGCTtcagatataaaatattatgttcTAATGACGCTTCGCTCATTAAGAACTGTTTCATATTACAGTGTAGTTTGAGCTGAGACATTGCGCTGGATATCTTTCCTTTTggctttataaaaataataatgaaacaatgTGAACAAGAGCATAAGAATGTATA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579952.1 lncRNA downstream 52488 8511307 ~ 8516859 (-) True LOC117599540
TU28052 lncRNA downstream 79701 8489164 ~ 8489646 (-) True G23643
TU28050 lncRNA downstream 80589 8488514 ~ 8488758 (-) True G23641
TU28038 lncRNA downstream 85318 8479854 ~ 8484029 (-) False tcta
TU28192 lncRNA upstream 119109 8691939 ~ 8692150 (-) True G23758
TU28397 lncRNA upstream 336389 8909219 ~ 8990207 (-) True G23952
TU28424 lncRNA upstream 431459 9004289 ~ 9004512 (-) True G23973
TU28428 lncRNA upstream 447239 9020069 ~ 9021558 (-) True G23977
TU28447 lncRNA upstream 497576 9070406 ~ 9070769 (-) True G23991
XM_026921828.2 mRNA downstream 85200 8481049 ~ 8484147 (-) False tcta
XM_026920277.2 mRNA downstream 217714 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921551.2 mRNA downstream 304118 8260485 ~ 8265229 (-) False mitfa
XM_026921537.2 mRNA downstream 304118 8260485 ~ 8265229 (-) True mitfa
XM_026923857.2 mRNA downstream 575724 7991214 ~ 7993623 (-) True gpr27
XM_026937315.2 mRNA upstream 277152 8849982 ~ 8853110 (-) True inka1b
XM_026913318.2 mRNA upstream 287542 8860372 ~ 8915086 (-) True gnai2b
XM_026917064.2 mRNA upstream 349294 8922124 ~ 8953564 (-) False slc38a3b
XM_026917047.2 mRNA upstream 349294 8922124 ~ 8953564 (-) True slc38a3b
XM_026915833.2 mRNA upstream 400339 8973169 ~ 8982021 (-) True rbm5
TU28035 other downstream 85166 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 85233 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 85318 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 304118 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2089336 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 862733 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 1142697 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 1290537 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1916463 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4665874 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile