RNA id: XM_026913026.2


Basic Information

Item Value
RNA id XM_026913026.2
length 2477
RNA type mRNA
GC content 0.45
exon number 11
gene id fkbp5
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16011998 ~ 16024469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCGGTGTAAAATAGCGCCGCTGGAACATTTAGTACTCACGGTGGAAGAAGGCGGGTCGGGCTTCCTCCCCGGCAGCAGcagcggcagcagcagcagcgcggCGCCCTTAAAGCGCCACGGAAACATGTTGCACTTGTCCACATTTGTGTAAAGTTCCTTGCGGATTATACAGTCAAGCGCATGAGACAGACCGGAAACAAAAGCGAAATATtgggAACAAGGGCCTGTCTTGAGGAGATGGCCAAATCTCAGGATGTGTGTCCAACTGCCCAGTCTCTTATTGCCCTATTCGCCTCACAGGGTTTAGACATCACTCCAAACAAAGACCGGGGAGTGTGCAAGATTGTGAAGCGGCATggtacagagggagagaagCCTATGATTGGGGACAAGGTGCATGTCCACTACACTGGAAAATTGCTTAATGGGAAGAAGTTTGACTCCAGTTTTGACCATAAGGAGCCTTTTGTCTTCAACGTAGGCAAAGGTCAGGTGATCAAAGCATGGGATATTGGTGTGTGCTCCATGCAGAAAGGAGAGGTGTGTCTGCTGATGTGTAAGCCAGAATATGCCTATGGCTCTGTTGGCAGCCCCCCAAAGATCCCTCCAAACTCTACACTATTGTTTGAGGTAGAGCTGTTGAGCTTTAGAGGGGAGGAGCTTACAGAGGATGGTGGAATCTTAAGGAGAATAAAGGTCAAAGGGGAAGGCTACAGTAATCCTAATGAAGGAGCCACAGTTCATgTGCACTTGGAGGGAAGGTGTTGTGGCCGTTTATTTGATTCACGGGACGTCACATTTGTGGTGGGAGAATCTGAGGACATGGGTGTTCCTCTGGGAGTGGATCGGGCCATGGAGAAGATGCAGAAAGGGGAATGTTGTCTACTATACTTAAAACCCAAATATGGCTATGGTAAAGAAGGAAAACCAGAATTGGACATTGGACCAAATGCAGAACTTTTGTATGAAGTGACACTCAAAGATTTTCAAAAGGCCAAAGAATCCTGGGAAATGGACTTGAGCGAGAAACTAGAGCAAGCAGTTTTGGTCAAACAGAAGGGAACACAGTACTTCAAGGCTGGGCGATACTACCAGGCTGTCATTCAGTATCAGCGTATTGTAACATGGCTGGAGATGGAGTGTGGGGTTGGAAAGGAGCAACAGCAGGCCATTCAGGCCCTCCTGCTTGTTGCCCATTTAAACCTGGCTCTGTGTTACTTACGCCTCCGGGAGTACTCTCAAACTGTGGAAAGCTGCAACAAGGTGATGGAGCTGGACTCTGCGAATGAGAAGGCGCTGTATCGGCGCGGAGAGGCTCATCTGTTGAGGAATGAATTCAGTCTGGCCCTAGTGGACTTCCGGCAAGTTCTTCAGGTCAATCCCACCAACCGTGCAGCCCATTGCCAGATCGCTGTCTGCCAACGCAAGATACGTGAACACCATGAGCGTGATAAAAAGATCTATGCCAACATGTTCCAGAGGTTTGCTGAACATGATGCCAAGGTGAGCCGATTAAAAAGGAGTAAAGAAGATTGTGGAGTGCTAGATCAAAACTGCAAGGCTATGAAGAGGCCACGGAGGAGTCAGGACTGCCCCTAATGGTCCACAGTCCTCCCCACAATGCCTGTAAAGCTGTGCAGATGCAGGCTGGTTCTGACTTTATGTACTTTGTGCTGAGTGCAGTACCGATACGCATGGACAGCCCCTTTTCACACACCGTGACATGACTGCTATCTCTCAGAACCCAAAAGACGAAGGCTCGGAAAAGACTAAGTATAAGAGCAAGGGTCTCTGAAGAAGTTATAAACTTAAATGGCATTCCAACAGACAAAATGCACACATGACCACTGGTATTCAACATCTAACCTCCATCACATACATCGTGATCCAAAAGTCTAAGACCACACTGAatatctgggattttttttacatttaaaattggagtaataaacagaaatattcaaaacaaacaaagtaagtgttcaatatcttgaatatttaacattaacatttaaataatatccctatttaaatgtaagccaatttgtgatattgaccatgttatctgctttgtacaaaagctcagattttcctcatgcatAATCTCTTCTGTTGAaccatgtgttcagacgacactctgatggattttatctaaaatggatcataaggttttgcacaaacttgtagagtccatgccaGCCTGAGTGCCcaatgtcattaaagcaaaaacggGACATaacaaatactaagaaactctgaaattcatgtcagTATTCCAAAGATTCTGCCCTTCATTCAAgctgttgtcaataatataattgtaATCACTGTatgaaattagaaaagaatgcaaaatataagtattttcactagtggtctcagactattggaccccactgtacatcTGAACCTAGCAAGGCATTTGTATAATGTAAAGATCACTGATAAGAATAAAAGTTGgtactgtataatgtg

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0016020 membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09571 FKBP4_5; FK506-binding protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33280 lncRNA downstream 78140 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 223845 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 286542 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 329954 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 395250 15615025 ~ 15616748 (-) True G28173
TU33314 lncRNA upstream 11364 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 13514 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 98260 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 101435 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 101457 16125926 ~ 16126299 (-) False eif4enif1
XM_026930718.2 mRNA downstream 36014 15960164 ~ 15975984 (-) True LOC113536636
XM_026930704.2 mRNA downstream 60511 15935781 ~ 15951487 (-) True LOC113536633
XM_034311664.1 mRNA downstream 101927 15899291 ~ 15910071 (-) False LOC113536620
XM_034300875.1 mRNA upstream 23524 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA upstream 23524 16047993 ~ 16056680 (-) True entpd8
XM_026924815.2 mRNA upstream 49577 16074046 ~ 16083778 (-) False tgfa
XM_026924805.2 mRNA upstream 49577 16074046 ~ 16083776 (-) True tgfa
XM_026916183.2 mRNA upstream 82360 16106829 ~ 16119848 (-) False patz1
TU32920 other downstream 542769 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 550997 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 712979 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1136008 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1248486 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1489243 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1924688 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2046518 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2552755 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile