RNA id: XM_034312433.1


Basic Information

Item Value
RNA id XM_034312433.1
length 1860
RNA type mRNA
GC content 0.48
exon number 13
gene id st3gal3a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16534768 ~ 16586246 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgatTTAACGCATGCCCACTACTGCTTAGTGGGGTACCGGATTGGGACAGGGGGTTATTGTTGTTAGGACGTGGTCTGGCTTGTGCGTATGAAGACTGAGAATACGGTGTAAAATGGAGTTGACGGCTTTTTCACAGGAACTGTGAGCGTTAAAGagcaagatgtgtgtgtgtgattcacgGGGCTTTCATCTCCTGGATGATCGTCTGAAGATGGCAACTGAGAGATGAGTGCGATGAAGCCCACGAGGAATGTGATGCTGGTGCTCTGTCCCATGCTGGTGCTCGGCTTCCTGTACTATTCGTCTGGGAGACTGCACCTCCGCCCCTGGAGCCACAGATCACAGGTGGACGTGGACCGCTCATCCTCCGTGGGACGGGTAATAGCATCACGTATAGTGTATGACAAGCAGGGGTTCCTCATTAAGCCAGATGGAAGACTgccGCTGGAGCTACAGTATAAGTATGGAAATCTGAGTAAAGGAGAATGTAAGCCCGGCTATTCGGAGGCCAAGATGACCTCAATCTATCCAAAGTTTGTGAAACCGGCCCCCATGTTCCTTGATCAGAATTTTAAACGGCTGTCGAAGATCAGCAACTACCTACCACCCTTCGGGATAAAATCACAAGAAAAGATCATTGACATCATTTTAGCTGAGGCAAGGAACTACGGGCTTGGAGGTGAACTGGACAGTTTGAGCTGTAAGAGGTGTATCGTCATCGGCAATGGAGGGATCCTTTCCAACAAGTCCCTGGGCTCCAGAATTGATGAGTATGATGTGGTCATAAGGCTGAACGGGGCTCCAGTGAGCGGCTACGAGAAGGATGTGGGAACTAAGACCACCATGCGCATCACATATCCAGAGGGAGCGATTCAGAAAACCGAGCTCTATGAGAAGAGCTCTCTGTTCGTCGTCTCTGCCTTCAAACCACCTGACCTCAAATGGCTCAGGCAGATAGTGTTCAAGGAGAAACCGAGAACACGGCGTGGGACAGATGGATTCTGGAAGTCAGTGGCGCGTGTCGTGCCCAGGGAAGCAGCAGACATGAGGATACTGAACCCGTATTTCATCCAGGAGGCAGCGTTTCAGTTCATCGGTCTGCCACACAACAACGGCCTCATGGGTCGAGGGaataTCCCAACGCTGGGGACAGTGGCGATCACGATGGCGCTGCATAACTGTGACGAGGTGGCGGTGGCTGGATTCAGCTATGACATGAGCAACCTTCATGCACCACTGCATTACTACGAGAAGCTCAAGATGTCCGCTATCAGAGATtCATGGACACACAACATACCGAAAGAAAAGGAGTTTCTGCGGAAGTTGGTGACGGCCGGTGTAATTCAGGATCTGACCTACGGAATCTGAgcatctctcacacacctgcacaaaTATGGAAATGCCATTGCTGACTCGCTTTTACCAAGCACCTGAGTATGCGGACTTCACGCATTAACATGGTTAATGGAAGACTCCACCCATCGCAAGTCTTGACGCTCCGGTCTGAGAACATGCTAGTATGTAAGACATAAAAAGGCGTGCTTTTACGCTATATCAGTCTTTGAGAAACTcccttttttaaaatggttttaaatgcAGCGTGAGGGACATGCCTTTGTATTTAAATAGTATTACTAGTGACATTAAGTATTGACGGCTGCAGGGACCACAAACAGCATTAGCACCACGGCTGTAGACACTAAGTGACAGCTGTACCACAGCAGTGAAACAGATACATTCTGATGCATTATGCACACTACATCATTTTAAAGATCTCATATGATGTATTGAATTTACTTTTTTCTCTGAAGTCCATCTAATCATTTCTGTTACAAAAACAGtcataattcattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33657 lncRNA downstream 44853 16462102 ~ 16489915 (-) False G28537
TU33656 lncRNA downstream 70835 16462102 ~ 16463933 (-) True G28537
TU33626 lncRNA downstream 175247 16358139 ~ 16359521 (-) True G28508
TU33633 lncRNA downstream 205347 16329108 ~ 16329421 (-) True G28515
TU33473 lncRNA downstream 268013 16266556 ~ 16266755 (-) True G28385
TU34351 lncRNA upstream 467845 17054088 ~ 17054656 (-) True G29119
TU34418 lncRNA upstream 807215 17393458 ~ 17394467 (-) True G29167
TU34417 lncRNA upstream 808523 17394766 ~ 17396199 (-) True G29166
TU34423 lncRNA upstream 837628 17423871 ~ 17429778 (-) True LOC113528975
XR_003403011.2 lncRNA upstream 839361 17425604 ~ 17429486 (-) False LOC113528975
XM_026909859.2 mRNA downstream 15610 16491681 ~ 16519158 (-) True LOC113523777
XM_034310370.1 mRNA downstream 45839 16476425 ~ 16488929 (-) True rad54l
XM_034298008.1 mRNA downstream 80202 16436840 ~ 16454566 (-) True LOC113531657
XM_026927117.2 mRNA downstream 104672 16419260 ~ 16430096 (-) True prkcda
XM_026938137.2 mRNA downstream 117949 16409528 ~ 16416819 (-) False ddi2
XM_034312398.1 mRNA upstream 3104 16589347 ~ 16622597 (-) True kdm4aa
XM_034314159.1 mRNA upstream 39411 16625654 ~ 16832868 (-) False ptprfa
XM_034314178.1 mRNA upstream 39411 16625654 ~ 16832868 (-) False ptprfa
XM_034314176.1 mRNA upstream 39411 16625654 ~ 16832868 (-) False ptprfa
XM_034314213.1 mRNA upstream 39411 16625654 ~ 16832868 (-) False ptprfa
TU32920 other downstream 1065539 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 1073767 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1235749 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1658778 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 686712 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 927469 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1362914 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1484744 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1990981 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile