RNA id: XM_026914240.2


Basic Information

Item Value
RNA id XM_026914240.2
length 1948
RNA type mRNA
GC content 0.41
exon number 8
gene id tspan2a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13516180 ~ 13530635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGagcagtgggcggggcttacagCACGGTGTCGCACGCGCTCGGTGTGGCTCAGTGAAACATTTCCCGCATTTCTCTCTCGAGCTGGACATTAATCCTGCGGTTTTAACCAAGCGGAGGAGCCCCGAGGCGCAGAGAGCGGCAAAATGAGCAAAGTGCAAGGAGGCACGAAATGCATTAAATACCTGCTTTTCATCTTCAACTTCATATTCTGGCTTTCTGGTTCATTGGTGGTAGCAGTGGGACTGTGGCTGAGGTTTGATCCTAGCATCCTTTCATTACTGAAAGATAATGAGGCCCCCCAGACCATCTTTTTTGCTGTGTATATTTTGATCGGAGTAGGAGGAATCATGATGCTCGTGGGTTTCTTCGGGTGCTGTGGAGCCGTGAGGGAGTCGCAGTGTCTTCTGGGATTGTTCTTTTCCTGTCTGCTGATCATTTTTGGTGCAGAAGTGGCTGCAGGAATTTTTGGCTTCTTGAGCAAAGATCAGattattaaaCAGGTTAAAGACTTCTACACCACCTCCGCAGCTGGAAATGGCAACAGCACAGTCACTTCCATGTACCATGCTACTCTTGAGTGCTGTGGAGTCGAGAGAAAATCTAATACGTCGCTGTGTCCTGATAATAATAGCAAGGACTGCATCAAAGCCATAGAGGATTTTTTCAGTGAGAAACTCTTCATCATTGGATATGCGGGTATTGGCATTGCAGGAATCATGATAATTGGTATGATCTTCAGTATGGTTCTATGCTGTGGTATTCGGAGCAACAGGGAGGTCCTATAGATGCTCATAGGCCTCCTACTTAAGGCTGAACTGTCCTGAATCCCCTGTCCTGACCTCACTGAGCCATCACATTTGAAAGGCTCACATAAAATAGTGTAAGATATTGTTGCAGCTTTATAATaatcttttgtttctttgtttaattgtaTGTCTTTGTGCTGAATCACCACTGCATGGACTGAGAGTGTAACTGAATTAACATGAccttatattattttgtttatctgGGAGAGCAGTTACGATTACAGCCTGATTTTTATGATCAGTTTAGACATTACCAAACAGAGAAGCTTGGGCaacattctgtttttctccttctcctacTATGCATTACACAACTTTGGtaatgtaaatactgtatatatagaaaAGGTACTACTTGCTTTCTGTTGATGCCTTGGAATGTTATTTAGTAGCCCATGTTTGCTGTAGTAAAGTGTTTAGTTTAGGTTATGAGTAATGCTTTGTAAATGTTTAGGTGGTTTGTAAGTGATTCATGTTCACGCTGCCATATTTGCAAAAACATGATTCGAAGATGACTGCAACAGCACAGTATTGAGTGGTGAGGCATGAACATATACCACTCACACTTACCCAAAACCGAGAGGAATACATGTTGCTTGTAGTGCAGTGTGAAAACCCTTGCCCTTGTAAACTGTCAATCCTTTATAGTAATGTCTTAAATACTACCACCTACAGTACCCTTGCATTCTTCCATGAATGTGTCAGCACTGCCTCCATACTGTTAGTCAGAAGTTCTATATCAGTGAAACATTAAGCACAGCTTTGTGTGGGTAACAATTATAGTATCACAGTTCTTTAATCACACGAGCACAACTTGGGTGAACTGATACCTTGCTGTGCCTTTAATCACACATTCAGTATGGCACCTTCCTTTCCTACCTAAGCATGCTGTGAATGATAAAAATATGCCCTTGTATATATCATGAGTTTATATTTCTCCTAGAACATTTCTAACTTGCTTGGGTAATGCTTTGTTCTTTGAATACATGGTGGTATGGGTTTAGCCGGttgttaaaacacaaaaaaattatcaaTGAGTTCCACAGCATGTGTTTTGTAGCTATCTCTAAATATGGTTTATGActgctttgaaaaaaataaataaacggtaataaaaaaaaaaagcattgcttGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31647 lncRNA downstream 20319 13493512 ~ 13495861 (-) False slc5a8l
TU31421 lncRNA downstream 340021 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 346518 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 410094 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 445357 13070595 ~ 13070823 (-) True G26570
TU31828 lncRNA upstream 110529 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 116812 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 124837 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 153488 13684123 ~ 13685782 (-) True G26985
TU31888 lncRNA upstream 258158 13788793 ~ 13791366 (-) True G27016
XM_026921607.2 mRNA downstream 14010 13493512 ~ 13502170 (-) True slc5a8l
XM_026926108.2 mRNA downstream 22921 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA downstream 22921 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026926279.2 mRNA downstream 264269 13234936 ~ 13251911 (-) True ppm1j
XM_026922711.2 mRNA downstream 284440 13214941 ~ 13231740 (-) True rhoca
XM_034298028.1 mRNA upstream 2346 13532981 ~ 13544134 (-) False ngfb
XM_034298017.1 mRNA upstream 2346 13532981 ~ 13544134 (-) False ngfb
XM_026925656.2 mRNA upstream 2346 13532981 ~ 13544134 (-) False ngfb
XM_034298022.1 mRNA upstream 2346 13532981 ~ 13544134 (-) False ngfb
XM_026925664.2 mRNA upstream 2346 13532981 ~ 13544134 (-) True ngfb
TU31648 other downstream 16196 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 277374 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3025885 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3647902 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3797210 9715527 ~ 9718970 (-) False tnnt2b
TU31814 other upstream 101627 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 343079 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 519766 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 861645 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1342313 14872948 ~ 14875990 (-) False pxmp4

Expression Profile