RNA id: XM_026914958.2


Basic Information

Item Value
RNA id XM_026914958.2
length 5298
RNA type mRNA
GC content 0.45
exon number 27
gene id chl1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7282007 ~ 7370519 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagctattgaCCGCAACTGATCTGTTTCAGTGCAGAGCAAAGAGCAGAGCAAAGCTGTTGCGTTACTTTATTTCCTTTCggggagaagaaaaaagagggagagagagagagagagagagagagagagatagaatcTCGCGCGAGACGTTTTCACGCCAGATTTCTTCCAGCTTTCCAGCTTTCCTATCGCACGCGCACTCACAGTTCTCCGAAAGGTCACGTTCCTGTACCTACTGGAGTGAGATGTACTGAGATCTGGCCCACACCagtcttttcttcttcctctgctcAACTCTGAGGGTGTGGCCAGTGATGCGATTACCGTGGAGACTGGGCGTCGCCCTGCTACTGGGGGCATTCTTCAATACCAGGCATCTCACCCACGCTCTAGACATTCCGTTGGAGATTGTGCAGCCGCCAACGATAACAGAGCAGTCACCCGTCACCCTTATCGCTTTGTCCTTTGATGAGAGCTTTGCAGTCAAGTGTGAAGCCAAAGGCAACCCTGATCCAGAATTCAAATGGACAAAGAACGGGCAAGATTTTGATCCCTATCAGGACCCCATGTTGGTCACTAATGAAGCCTCTGGAACTTTTATCATCCCGAACAATGGGAACCTCACTGAATACCAAGGCACCTATCGCTGTTACGCTTCCAACAAGTTCGGAACTGCCATGTCAGAGGAAATTGAATTCATCATTCCCAATGTTCCGAAGTTCCCAAAAGAGAAAATTGATCCAATCGAGGTTGAAGAGGGACAGCCATTTGTTCTGGAATGCAATCCGCCTAAAGGAATTCCTCCACTGGAAATCTACTGGATGACCATCAGCATGAAGCAAATAGAGCAGGATGAGAGAGTGACTGTGGGGCTGAATGGGAACCTCTACTTCTCCAACGCCATTCAGACAGACAGCCGGAGAGATTACTGCTGCTATGCATCCTTCCCAAGAATACGTACCATCGTCCAGAAAACCGCCATGTCCGTTATTGTCAGCAACTCCAACGCCATTCTGGAGAGGAAGCCCAGTCTTCTGTCGCCCTCTGGTGGCCAAACATACACTCATATTTTGAAAGGGGAGGAACTGCTATTAGAATGCATTGCTGAAGGCTTCCCAACTCCGGAGGTTGAGTGGAAAAAGATAGGAGAGAAACTTCCTGACCGAGCTGTGTTGAAGAATCATGGGAAGCATCTCACCATAGAAGAAGTGATAGAAGATGATGAAGGGAAATACATGTGCAAGGCCTATAACACACATGGAGAAGCTGTGCATTACTTCCACGTAGCAGTGGAGGAGCCTCCTAAGTGGGATATCGAACCCAAGGGACAGCTGAATGTTATCGGAGCTGATGTCATCATCAGCTGTGCTGCATATGGCAAGCCAGTACCCTCTGTGAAATGGATGGTGAACGGGCGTTCTATTAGTGAGGTTCCAGCAACCAACAGAAAAGTGGTTGATGACACCATCATGATCCACAACGCCAGCCCCAGTGACAGCGCAGTTTATCAGTGTGAAGCCTCCAACAGACACGGAACGCTACTGGCCAATGCTAACATCATGATCATGAACCTGCAACCGCTGATCCTGACAGAAAATAATCTTCAGTATTCAGCAGTGGAGGGATGGCGAGTGATCATGCACTGCAGGGTGTTCAGCTCACCACCCTCAGCTATCATCTGgagCAAGGATGACAGTGCTGATGCTATAGAGGGAGCGAGGTTCTCCATACATGCAAATGGGTCACTGGAGATCCACAGCGTGAAGGGGGAGGATGATGGCGAGTATACATGTGTCACTGAAAACACTGAGGGCAAACTGGCCATCACTGCCTTGCTGGAGGTTAAAGCTCCCACTAAGATAGTGAATGCTCCTCGGGACCAGCGTGTTTTGGTAGGCACCACAGTTCAGTTCTCATGTCGGGCTGAAGTAGATCCGTCCTTCAGTGAGGATTATGAAATAATCTGGGAAAAAGATGGCATCCCTCTCAACGACAGTGAAAGCACTGGCTATTTTGTAGATGGAGAGATGCTGCAGATTGTCAATGTGAGCTTCAGTGACCAgggtgtgtacgtgtgtgtggcCAGAAGTCCAGTGGATCAGGATAGAGCCACGGCACTGCTTACAGTACTGGATGTACCAGACGCCCCGCAAGGTGTGGTGCTCGCTGAACGCAGAAACAGGACTGTGAAACTTAAATGGATCCCAGGAGATGACCATAACAGCACTATCACAGAGTTCATCATCGAATATGAGGAGAGCCAGTGGGAGCCAGGCAGGTGGAAGGAGCTGGTGCGAGTGCCTGGAAATCACCACTCGGCGCTGCTGAAGCTCCACGGGCACGTAGACTACAGCTTCCGCATCTCAGCAGTAAACGAAGTGGGAAAAGGACGACCTAGTAGAGCCAGCGACAGATACAAAACCCCAGCCTCAGCACCTGACAAGAACCCTGAAAACATCAAAATAGAAGCTCATTTGCCACACGAAATGGATATCAACTGGAAGCCCTTGTCCCCTATGGAACACAACGGGCCTGGTTTGGAGTATAAAGTGAGCTACCGGCGACAGGATGTGGATGAGGAGTGGCAGGAGAACATGGTAAAGAGGCACTCATTCGTGGTGAAGAACACGCCAACATTTGTCCCTTACGAGGTTAAGATCCAAGCCAAGAACCATGCTGGCTGGGCTCCTGAACCTGAAACCATAGTCGCCTATTCAGGAGAAGACTTCCCATCAGCAGCACCAGAGGATGTAGCAGTGGAGGTGATGAACAACACAGTGGTGAAGGTCAGCTGGAACCGCCTTCACAAGGACAAATTGCACGGACATCTGGGAGGCTACAGGGTTCAGTGGTGGCGTCTGCGAAGTCTCTTGAACTTGAGGAAAATGCATggtgataaacacacactcatgtttcCCGGAGACAGAAATCATGCTCTAATCCCAGGGCTCCAACCTTTCTCCGAATACAGTCTCATTGTCATGGCCTACAATGGACGAGGCAATGGACCAGGAAGCCACCCGGTCACTTTTAAAACTCCAGAGGGAGTTCCAGATCAGGCTGCGTTTTTCAGGGCTACAGATGTTCAGAAGCATGCTCTCACACTTAGCTGGTCTCCTCCAGTGGAGGCTAATGGAGTTCTTACCAGCTGTGTCCTGCAATACCAGCTAATTAACAACACAGAGGAAGTGGGACCCCTCCAAACTGTGAACATCACCAACCCAGATACAAATAAATGGCACCTCAGGGACCTGGAGCCTGTTAGCCGCTACAGGTTCTACCTGTATTACTGCACACAAACAGGCTGTGGCCCAGCGACTAGTGAGGAGTACATCACCATCCCAGAAGCACCACCCACTGTGTTGAACATTAGTGCCTCAGTTAGCGACAACTTTGCAAATATCAGCTGGATTCTGGGGAAGGATCAAATGGATTCAGAGTTATATGTTGCATATATGAAAAACCGTGAAGGTAACTGGAAGATATCTGAGGCCGTTAACTCCTCTAAGACTTTCCTGGTCATTAAGGAGCTGGAGCCTGGGACAGAATATACAGTACGCGTTATGGCTAAAAGCTGGCATGATAGTTCTAGCATTTTTGAAGATGTTATCAGGACCAGGGCCAAAGGTTTGGCCAGCATTCACAGTGGAATTTCAAATCAGGGCTGGTTTATTGGACTGATGTGTGCTGTGGCTTTACTTACGCTCATCGTGCTCATCGCCTGCTTTGTAAACAGGAACAAAGGAGGGAAGTACTCGGTGAAAGAGAAGGAAGATCTCCATCCAGACTTGGAGTCTCAAGGCATAAATGATGACACTTTCTGTGAATACAGTGATAATGATGAGAAGCCGCTGAAAGGCAGCCAGCACTCACTATCTGGAGACCTGAAGCGAGGGGACAGTGGGGACAGCATAGTGGACTATGGCGATGAGGATGCACAGTTTAACGAGGATGGATCCTTTATTGGAGAATATGCTGGACAGAAGGAAAGGGCATCCATGGAAATCAAAGGAACATCTCAGAGCAAAGCATGAAAGGACAAATCCTATTTGATATTGCTTACAGATATTTGGCACAGggacaaaaaagggaaaaattgACATAATCCCCTCAAATATGacttttggttaaaaaaaaaatatacagtaattcaTGTGTTTATTGTCAATCATGCTCTCATTcttatgttattttataagGTTTAGTTTCACACAAATTGTAACAGATCATTCAATCATTTTCAGCTGTATATAGATGTCAggtattctttttatatttttgaaatgaTGTCAAAGCTGCCAAGAATatgttcatttttgttgttatgtttttttgttgttttgttttttgtaaaggGAGTCTTGGTAATCCTAAtgtaaaataagagaaaaaaaaaaggagacgTTCCAGTCTTAATTTGTTATGCACTGTGAGGTCTCTGGGGTCTCTGCATTGTCTTCTTGTAGTCAAGCAAATTTTCTGTTAGAGTATGAAactatggtttttttttcctcttttattttcttctagGCAAATATTATTGACATTTTATATTCAGATCTGCattcattaaatgtaattaaatatgtgtACAAAAAGCTGTTCATTAAATTATTTCCCGTTTTAAAAGTATGCAGACTAGAAGACAAAGACAAGATGAGGATTATATAAGCAACTTGTCATTCTTAGTCACTAAGTCTGTAAACATATCCAGTATTCAAGCTACACTAACCAATAGCCATATACAGTGCAATCATTGTTATGTTGTGTTTGCTTCTATTAACTCATTGTAGTTTGAGCAATATACAGTACCATCATgatatgtgaaatatatattgtaaaaaaaaagacttgtgtTATCACCTTTATAATGTTTTCAGCCTTGCATTTAGTATTGTCATATCACAAGGGCTTtacagaaaagcaaaaatgcACATATATGCACTCTCTTAGTAAATACTGTTGCAACTGTGGCTCACTTTCACCAGTTGTTAATCTGTGAGAAAATGTAATTCCAGCTGAGCATTTGACCCAACAGACATTCGGCTTGTTCTCGAGTTTTGAGCAATACCATCAGGGTGAACCTCCCAGTTCTAAACACGATATTTAACTAGGCCATTGGATTCACACGTAACTTGACTTACCATAACAGAGTAGAATGGCATTTGAAATGTTAAGTTAAATTTGAATGGCATCAGGCAGCTCCTCTGtacaaacatgtttgtgtttgcatgtttaTGGATGTTGAATGATGTTTCGCACAGATTTGACATTAAATTTTATTACTTGTCTTTTTCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27226 lncRNA downstream 481188 6799518 ~ 6800819 (-) True G22896
TU27070 lncRNA downstream 516315 6718275 ~ 6765692 (-) True G22743
TU27026 lncRNA downstream 598277 6683454 ~ 6683730 (-) True G22699
TU27022 lncRNA downstream 606320 6675480 ~ 6675687 (-) True G22695
TU26972 lncRNA downstream 659565 6621935 ~ 6622442 (-) True G22650
TU27695 lncRNA upstream 302181 7672700 ~ 7675334 (-) True G23337
TU27688 lncRNA upstream 334608 7705127 ~ 7710210 (-) True G23330
TU27777 lncRNA upstream 513009 7883528 ~ 7883813 (-) True G23417
TU27786 lncRNA upstream 535806 7906325 ~ 7907008 (-) True G23426
TU27787 lncRNA upstream 543177 7913696 ~ 7914794 (-) True G23427
XM_026918266.2 mRNA downstream 88866 7066318 ~ 7193141 (-) True LOC113529215
XM_026918278.2 mRNA downstream 322847 6800925 ~ 6959160 (-) True cntn4
XM_034309682.1 mRNA downstream 494415 6782273 ~ 6787592 (-) True rhebl1
XM_026922899.2 mRNA downstream 511159 6744383 ~ 6770848 (-) True LOC113531909
XM_026921147.2 mRNA downstream 679898 6578612 ~ 6602109 (-) False rbpjl
XM_026925761.2 mRNA upstream 407671 7778190 ~ 7786449 (-) True ppp4r2b
XM_034298664.1 mRNA upstream 407671 7778190 ~ 7786215 (-) False ppp4r2b
XM_026929753.2 mRNA upstream 418044 7788563 ~ 7822058 (-) True gxylt2
XM_026923857.2 mRNA upstream 620695 7991214 ~ 7993623 (-) True gpr27
XM_026921551.2 mRNA upstream 889966 8260485 ~ 8265229 (-) False mitfa
TU26888 other downstream 801996 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 1205130 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 1745947 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 1746000 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 2080795 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 892100 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1110532 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1110532 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1110532 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2065044 9435563 ~ 9441810 (-) False tusc2a

Expression Profile