RNA id: XM_026915010.2


Basic Information

Item Value
RNA id XM_026915010.2
length 3582
RNA type mRNA
GC content 0.47
exon number 9
gene id tox2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11069885 ~ 11169050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTGAAGCGGCCCCGGCGCGCGCTCAGCGGATGTCAGCGCTGTGTTTTTGAAAAGGTCACACGCAGTAGCTGCAGTCAGGCTGCACTTGTGCTGCAGCTGTACATTCGCAGATCCACTTTTACAGCAGGCTGCACTAGTTCCTGCCTTAGAAAAGTGCACTTTTTTGTTTGAATCCTAGCGTTTGTCCGGTGAAGCTAAACAGTAGTCAGTAGTCAGTCCATCATCCTCAGGCATAATGAGCGGctgatgtgtgttttcatgCTGAAGTGAAAAACCGCGAACGGATGTGAGGAAAAGAGcgcctggagagagagagagaaagagagagagacagacacagagagagagagagacagagagagagactcaacccctttttttcttctttcaatcgttctgtttcttttttgtttgggtTAACAATAGAGCAAGCGcgccggagagagagagagagagagagagagagagagagagagagagagagagagactcgtAGACGCTGAACCTGTTTTCATGCCTTCAGTGGAGCGGAGCAGGCGATGGATGTGAGATTTTATCCTGCACCCCCTTCGAGCGTGGGCTCCTGCACGTTATCCACCGACTCCAGCCTCGCCTCTCTGGACTATTACCACTGCAACAAGtTTGATGGTGAAAACATGTACATGAATGAAAATAACCAAGAGTTCCTTTCCCCAAGTCAGAACTACTCTGGGCAGGGAGGAGGCAGTGGGAATGGAGGAGGTGGCGGCGACGAGGACTATGAGATTCCTCCCATAACCCCACCAAACCACCCCGAGCCTCCTCTGCTGCATCTGATGGATCCAGAGTCCGGCTATTTGTGTCACTCGCTGCCCCATAACGGCCTGATCAACCCGTACTCATACCCCGAGCTGCCCGCTCTCATGATGTCCAACATGCTTGCACAGGACGGTCACCTGCTCTCAAGCCAAATGCCCTCGATGCAGGCTCTGGCCGGGTCAGACAGCGAGCACTACCCCCGTGCCCACCATGCCCCCAAGCTAAACACTCCTACGATACTGCCCCATCCCATGAGCGCTCTGTCCCAGCTCAGCTCTCGGATTGGCCGAGGCTCCTTTACCTACGCTTCCCCTTCGTCCGTGGGAAGTCAGTCAGCCACGCCCTCCCCTTCGAACTCCACCCAGGAAGAGGAAGCAGATTACCACGCAAAGATCACGGGGGAGAAAAGACCCTCCTCAGACATGATGAAGCCCAAACCCAAGcctcagaagaagaagaagaagaaggatcCCAACGAGCCTCAGAAGCCCGTTTCAGCCTACGCCCTCTTCTTCCGGGACACTCAGGCGGCCATTAAGGGGCAGAACCCTAATGCTACGTTTGGAGACGTCTCCAAGATTGTGGCTTCTATGTGGGATAGTTTGGGAGAGGAGCAGAAACAGgggtataagagaaaaacagaagcGGCTAAGAAGGAGTACCTGAAGGCCCTGGCAGCGTACCGAGCCAGCCTGGTTTCCAAGACCTACAATGACCCAGTGGAGAGTAAAAGTGCCCAGTCCAGCCAACCCTCATCCCACATGATGCCCCCTAACCCCCCGCTGTACAGTGTACCCCCTCAGCCTTCCTCTCCTTATTTGGGCCCGAGTCCCTTCCCTCTATCTGACCTACAGAGTTACACAGCAGCCGGAGCGCCTCGGCATGCGCTGCCCCGCTCGGCCATGCTGCCCGCACTCAGTGCCTCCCCTCCGGCCTCATTCCAAATCAGCCCCCCTCTCCACCAGCAGCTCTCCCTGCACCAGGGCTCACTCCTCAACCAGCCAATCCGCATGCAGCAGGTCCAGTCGCAGCCAATCATCTCTCACCAGATGGGCCTCCAGGCCTCACTCCACTCCCCGGCCCCAGGCCAACAGGGCTTCTCTCACTTACAGTCAGAATATCAGAAGACTGTGGGAGGCTCTCAGTCTCCTGGAGCTCCAAACCCAGTGGGACAGAACCCTGACTGGGACAGTGAGTACTGCAATCGGGAGTGTGGAGGAAACCACTGcagtgGCAGCATGATAGGCAGGGACAAGCCACTCTACCTCACTTGAAGTGAATggagaagaaacaaaaagacgATGTGTGACAAAAAGTGATGAAACAACACCAGGGAGTACCCTACACCTCTCCACCCTTTCCCCCGTCACCTTCTGTTTTTACTCAGTGTCATTTTCATTCGTTTTTAGAAGGATGTGTACGCGTGTTCTGAAGACTACTAGTGATCCTCTCATTTTTTGCCAAGCACTTAAAATGTACAGGCCTCCCACTGGAGACCTTCCAGAGCACTCTTACTTtctctgaattaaaaaaaaaaaacatagatatattaaaggaaaaaataaacaaactaccATAAAACTGGCCCTCAGGGCAAACGAGCTTTAATTAAAATAGAGGAAAACTTTCCTCTTCTTGATTACTTTCTCATGCCctcattttgttcttttatttatttcttgcttgctataatgtttttttttgccaataacAGGTCCTGTACTGTAGAGAAATACTCTTATGATAAAGTCATTAAAGACCAACATCTTACTGTAGGTTCATCTGATGCTCTGTGAATTTTGAAAAGGTATTAGTAaggtcagaaaagaaaaaaaaagaaacaggtgaatagataaatacatttaacaacttctttttttgtaattttaaagaCCTTCATTGGTCTTTAATAATCTGTCACAGTGTGATTgtaaatatcactttttttgGGATCAAATTGGAAAAAATGAAGTCcagatattttttcttctttaatatgacttataattcattaatttgtattttaaatggtATCCTGTGAGCGTGTGCTGGTATGTGAGCAACTGAATGCcagtatgcatgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgttgaaaaatTGATCAGCCTGTGCAGATATTAGAGGAgtgtttcacacaaacacaatcttgCATTAAATCTGTGCTCACTGGTGGATTGTCAAATAAAGATTGATGGTTCAAAACCATTACAAACTTTATGACCTGCGTCTCCATTTGGGATCCGCAAACTGCAGCTCCGACCGTGTAAATTAGCAGAAAACCCTGACCCAAGGCTTGGTTTGTAACATTTTCCAAACAGGCTTGTTTTTAGAACCAAAATTTGTTCGGGATCTGATTGGCTTTGTTTGTTATCTCAGGTTGTACATTTCAGATGGATGAAAACGGGGACAGCTTTTACAGGAAGTGAGCCCCCAGTATTAAAACAAAGGCCTTTATTTAAAGGCAATTAGAGTCGTTCTTTTTGCCTGGTCTGACTGATGAATCCATGCCAGTGCAACATGTAGAGGGGAACCAAACCACGCTCAATGTGAGATATTTCagcacacatttaaaacaacagtgGGTCTATAGTTTTCTAGTAGCTTTGCTAGGTGTTATATTGTGTTGATCTCATCCTTaagttttgtggaaaaaaatacatttgatcatttagtcaagcttttctttctttcactgtagCATAATATTTTagtttggtaaaaaaaaaaaacttttaagaCATTTAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29801 lncRNA downstream 47244 11022439 ~ 11022641 (-) True G25185
TU29800 lncRNA downstream 48160 11021523 ~ 11021725 (-) True G25184
XR_003403497.2 lncRNA downstream 85878 10966696 ~ 10984007 (-) True LOC113534445
TU29745 lncRNA downstream 135752 10928851 ~ 10934133 (-) False itcha
TU29196 lncRNA downstream 898710 10170970 ~ 10171175 (-) True G24623
XR_004579523.1 lncRNA upstream 88714 11257764 ~ 11262304 (-) True LOC117599085
TU29952 lncRNA upstream 157776 11326826 ~ 11329556 (-) True G25320
TU29951 lncRNA upstream 157987 11327037 ~ 11329556 (-) False G25320
TU30130 lncRNA upstream 288924 11457974 ~ 11458190 (-) True G25476
TU30126 lncRNA upstream 315814 11484864 ~ 11485379 (-) False kif5ab
XM_026923859.2 mRNA downstream 58073 10986308 ~ 11011812 (-) True cbfa2t2
XM_026923861.2 mRNA downstream 69485 10988722 ~ 11000400 (-) False cbfa2t2
XM_034297881.1 mRNA downstream 69485 10988722 ~ 11000400 (-) False cbfa2t2
XM_026916070.2 mRNA downstream 135721 10916042 ~ 10934164 (-) False itcha
XM_026916042.2 mRNA downstream 135721 10916042 ~ 10934164 (-) False itcha
XM_026938020.2 mRNA upstream 259756 11428806 ~ 11441393 (-) True soat2
XM_026922188.2 mRNA upstream 273421 11442471 ~ 11485469 (-) True kif5ab
XM_026918430.2 mRNA upstream 331538 11500588 ~ 11514630 (-) False mbd6
XM_026918429.2 mRNA upstream 331538 11500588 ~ 11514630 (-) True mbd6
XM_026922382.2 mRNA upstream 353071 11522121 ~ 11536038 (-) True mars1
TU29342 other downstream 579590 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 1201607 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 1350915 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 1628075 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 2585771 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 2069654 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 2329555 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 2463212 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 2704664 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 2881351 14050401 ~ 14058445 (-) True G27107

Expression Profile