RNA id: XM_034300908.1


Basic Information

Item Value
RNA id XM_034300908.1
length 5021
RNA type mRNA
GC content 0.51
exon number 17
gene id rereb
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16327871 ~ 16346280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGATATTTCTGCACAGTGATGATCTTATTAGCTCCAACATGCAGATTTAACTTTGGCCATAGGAGTATGTGTTAAGTGGCAGATTTAGTAAGAAATTCTTCTGTGGAACACGTAAAGATGGAGTAAAATGATTACATAATGCGAGTTAAACGGGTGTGAAGCAGCTTCACTGAAGCTGAGCCTCTAGGggagggagaagaagaagaagaagtggatATTCTTTCGCACTGGAACTGAGCAGACATCCATTTTGAAGTGTTGATTGGAGTGATTAGTGTTACCGATACATCTAGTCGTTGATTTCACTGCGCTTTCATTTCGCAGCAGCGGCGGTGTCGGATTGTGTGTGGTATCGAGGCTCGGTTTGTGGCTGATGTCTCGGCGGACACGGAGCTGATTGCATTAGAGACGGCACATGCTCAGTTAGCGCTGCTGAGCGCCAGCTCTGTAGGCTGGCGCGTGAACGCTGAGGTCATCGCCTGAGCTCGGGGAGAAAATCCTCAGCCTAGCCTCCATTTTGAGTAGCTAGTATGAAATAGGCGAATAGCATAGTTTTGGGCCGCCGCCGCAGAACGAAAACAAACTGTAAACACAACGGAAAGAGCTTCCGCCATGGACGACCTGTTCAGCCCGCGAAGGCAGCTGAACAGCACGCAAGGGGAGATTAGAGTGGGTCCAAGTCATCAGGCCAAACTCCCTGAGCTGCAGCCGCTTCCTACTCCTGGCATAGACTcagtgacagagaaagaggagcTAGTCTGGACACCAGGAGTGAATGACTGTGACCTTCTCATGTACTTGCGTGCTGCCAGGAGCATGGCAGCGTTTGCAGGGATGTGTGATGGAGGGTCAACAGAGGATGGCTGTCTTGCAGCCTCCCGCGATGACACCACGCTGAATGCATTAAACACGCTCCATGAAAGCCAGTATGATGCAGCCAAAGCTCTTCAGTGCCTGGTGAAGAAACCTGTCCCTAAACTCATAGAGAAATGCTGGTCAGAAGATGAAGTGAAGAGATTCATCAAAGGTCTCAGGCAGTATGGCAAAAATTTCTTCAGGATCCACAAAGAGCTGCTCCCCAGTAAGAAAACGGGTGAGTTAATTACCTTCTACTACTACTGGAAGAAAACTCCTGAAGCTGTAGGGTCACGACCTCAGCGTCAGCACCGTAGGCAGACTGCCTCTCGCAAGGTCAAAACTCGCAACGCCGTAGCAGCTGCCAACACCAACTCCCGCACCTCATCTATGGAGCTCAGTTCAGCCAGTGAGGACGATATGGAGAGTGAGGACAGTGAGCAGGGGGAAAAAGGACAAGCTTGCAGCCACTGTCTAACCACCAGCTCTAAAGACTGGCATCATGGCGGTCGTGACAATGTCCTGTTATGCACCACTTGCCACGCCCACTTTAGCAAGCATAGACGGCTGCCACCTATGCCCAAGCCAGCTGACCCACCCTACCTGTTCAAACCTGTACGAGACGAAGATGAAGGGCTTGGTGCACGTCAGGGAATGAAGACACGGCGCAGCAGAGCATCAATGTCATCCCTGAGAAGTGGGCGGAACCGGCTAACAGGGAGCCCTGATACAGGTCTGTCTCCCTGCAACGACGAAGTCCGAGTTAGTGGCCACGCCTCCAGAACTGGCTCCTCTGCTATGGCAACCAGGGCATCCAGTGCTGATGCCAAAGCTATGGCTGGGAAGGCTGGCAAgAAGATAAAAGTGGAAGCATCCTTAGTAAAAGGAattaagagacagagagacaccgCTGCACCAGATACAGAAGAACCAGAAAGAAAAACCATGAAAAGGCCCAAGAATCAAGAGGTTCCAGACTCCCAGTCAGAAGGAGAGGGTGAAGGTGAAAGCTCAGACAGCCGCAGTGCTAATGAGGATGGCAGCAGTGATACTAAAGATATAGACCAGGACAACCGCAGCTCTTCCCCAAGCCTCGCCAGCCCATTGCCAGCCAATGAGAGTGATTTAGACTCACCTgttcctccacctccacctccagctGGGCCACAGAGCCAATCACAACAACCTGTTAACACTATAGCAGCTGCTCCTCCAGCTCCCTCTCAGACCCCACCTGCTCTACCACCTCAACCCTTACAATCAAGTGTATCTTCACCTGGAGTTTCTACCATCACTACCACcagcagcaccaccaccacTTCACGGGTCATCGTCCCTGTGGACATTACCCAAGATGATCCATCTGTCATTGCTCATAGGAGGAGTCAAAGGGGTCAGGAGGCTCCTCCCACATCCCAGCCTCCCTCGGGGCTCTCCTCTTTCCAGGGACCAGGTCCAGGGCAGGGCCAGTCTTTCCCTCCATCTGCCCCTCATTATCACCACCATCCAAGTCAGGTTCAGAATCATCCATCCAGCGCTCATCATCCTCATGGATTTGGTCCTAAGCCCCTTCAACTTCAGCGGGATAGCCTCCATTCTGCTCTGCCACTGACatctgcatctcaaatcaaGCCCCCACCAACTACCCCTATCCCCTCCTCTCACAAGCCAATTCCTCCAATTCCTGCTCCTCCACCATTTCTGCAGATCCACCCCAATCTGCCTCCACCTCCAGCATTAAAGCCTCTGGCCTCTTTACCTGCTCAGCACCCTCCCTGCTCTCAACCTCCTCCCTTGCACATTATGCCCCAGCCTCATCCTCAGCCTCAACTGCCCGTGCTGACTCAGTCCCAGAACCATCAAGGCAAAAGTCATGTTACCAGCCTCCCTCCAGCCTCAGCCTGTCCTCACGCTTTGCTCTCCCAGAACCGTCCTATGCCTGAATCCACCGCTCCGTTCACTCTGTCCTCATCTTCTGCTGCAGTCCCGGGCCCACAGCCATCCACTTCCTCTGCACCAAGTGCACCTGCTGGGCCAGCACACGTGACCATCAAACAGGAGCCTGTAGATGAAGATGAGAACTGTGAAAGCCCGCCTCCTCCTCCACGCAGGACTCCTTCACCTGAACCCACTGTGGTTAACATCCCCAGCCATGCAAGCCAGTCAGCCagGTTCATCAAACGTCTGAACAGAGGCTATAATTCCTGTGCTCGCACAGACCTCTACTTTACCCCTCTTGCTAACTCTAAACTAGCCAAGAAAAGGGAGGAGGCTGCTGAAAGACTCAGAAGAGAGGCAGAACAGAGTGCCCGTCAGAgtcgagaaagagagagggagcgtgagagggagagagaaagggagcgggagagagaaagagattcaGACAAAGCTTCTCGAGCCTCCAGCTCTTCCCATGAGGGGCGTATGGGCGATTTGCCATTGGCTGGACCCATGCCACCAGGACGCCCATCATTCGAGGCCCCCCCTGCGGCAGCTGTTGCCGCCGTCCCTCCATACCTCGGGCCTGATACGCCGGCTCTGCGTACACTCAGCGAGTATGCACGGCCTCATGTTCTATCGCCCGGCAGCCATCGTGGTGGGCACGCCTTCTTCACACCCTTGGGGCCTGCTGACCATTTGCTGGCCTATCACATGCAGGGCTTATACGCAGCTGACCCCGCACTCCGGGAGCTGCGAGAGCGTGAGATCCGTGAGAGAATGAAACCAGGCTTTGAGGTGAAAGCACCTGAGCTGGAGACACCTCTGCATCCATCCCACAATCACATGGATCATTTGGGCCGCCATGGAGCCCTGGCTCTAGCGCACCCATTTGGACCATACCACCCAGCCATGGAGCGCAACATGGTGCGGCCTGAGTTAACATACGCTGAACGGTTGACTGCAGAGCGACTCCATGCTGAGAGGATGGCAGCATCTGCTGTAGACCCCGTGGCCAGACTACAGATGCTCAATGTTCAGGGCCCCACCCTCTGGTGGAGCCGTTGGCAGGAGGTCCCCCTCTGGCTAGGTTCCCCTACCCACCAGGTGCACTTCCCAACCCACTGCTCAGTGAGTTGCCCCATGAACATGACATGCTGCGACACCCTCTCTTTGGAGCAGCATTCCCAAGAGATTTACCAGGACCACTGGGTCCCATGTCAGCTGCACATCAGCTTCAGGCCATGCAGGCTCAGTCAGCGGAGTTACAGAGACTGGCACTGGAACAGCAGTGGCTCCATGGGCACGCACACCTGCACGGCGCTCCTCTCCCTAGCCAAGAAGACTACTACAGCCGTCtgaagaaagagggagacaaGCAGCCTTGAAATAGTTGACGTACACTGTGGACTATGGGGTGATTTCTGTATTCAGGGTGGTAGCTGTTCCTCTCTGCAGGAACCCTGTACAGAATTCAGTTTATTCCCTTTCAGCACTTATGACTCTGCCCTACTTTGTGGTATTGTATGAAATAACAACTTTTTTTCTAAGCACATTGACCTTGTTTTTGTTGCATGACTATTACTTAGCcatttttactgttaaaaatgaACTCTATTGTAATATTGTTGCTGTGCTAAAGCACTAGATGTATTTAGTATTTGCAAGGTGCTGTCCAGTATCGTGAATATCCACAATACAGCTTAAAGTTTAAAACTTTATTGATACCTACTCTATAATACTGTACATAGTATATGTATCAAATAATATATTACATGTGTAAAAGAGTGTTTTAATGTTAGATTTGGActcaaaaagacaaaagaacCTGTGTGCAGTAAGTGCATGCTTTAAATACTGTATCATAGCTTTTCTTTAACCTCCTCTTTTTAAGGTATATCTTAGAGGGAACACTCTTATCAGTATATAACAGTAGAGAGAGAATAGTTTTTGGACTGTTTATTGCAATACAAATGAAACTgtattaataacaaataagtAATTAATTGACACCATGTCATATATCTCTGGATAAAGTATTATGTCTAAGTAACAATATAAAGCTAGCTGTGACCACTAGTGGAGTGTCATTATTTGTGCTCAAATGGACATCAGTTAGAGCTATTAACCACATTACTCGAAAACTACTGATGTGAAAACTTTTTCTTTACGCAACAGCCAAAAACACAGTATTTTCTACAATAAACCAGTGAATACTGAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33473 lncRNA downstream 61116 16266556 ~ 16266755 (-) True G28385
TU33472 lncRNA downstream 62711 16264924 ~ 16265160 (-) True G28384
TU33471 lncRNA downstream 63629 16263614 ~ 16264242 (-) True G28383
TU33463 lncRNA downstream 67559 16259436 ~ 16260312 (-) True G28375
TU33464 lncRNA downstream 68708 16258858 ~ 16259163 (-) True G28376
TU33626 lncRNA upstream 11859 16358139 ~ 16359521 (-) True G28508
TU33656 lncRNA upstream 115822 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 115822 16462102 ~ 16489915 (-) False G28537
TU33936 lncRNA upstream 224510 16570790 ~ 16571524 (-) True G28779
TU34351 lncRNA upstream 707808 17054088 ~ 17054656 (-) True G29119
XM_034300126.1 mRNA downstream 27965 16288171 ~ 16299906 (-) False iho1
XM_034300121.1 mRNA downstream 27966 16288171 ~ 16299905 (-) True iho1
XM_026928839.2 mRNA downstream 31858 16288171 ~ 16296013 (-) False iho1
XM_034300109.1 mRNA downstream 31858 16288171 ~ 16296013 (-) False iho1
XM_026928830.2 mRNA downstream 31858 16288171 ~ 16296013 (-) False iho1
XM_026921515.2 mRNA upstream 305 16346585 ~ 16354141 (-) True eno1b
XM_026921526.2 mRNA upstream 305 16346585 ~ 16353571 (-) False eno1b
XM_026912883.2 mRNA upstream 26502 16372782 ~ 16386220 (-) True frs3
XM_034310265.1 mRNA upstream 26502 16372782 ~ 16379982 (-) False frs3
XM_026938369.2 mRNA upstream 47961 16394241 ~ 16398401 (-) True LOC113541386
TU32920 other downstream 858642 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 866870 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1028852 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1451881 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 926675 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1167432 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1602877 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1724707 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2230944 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile