RNA id: XM_026916472.2


Basic Information

Item Value
RNA id XM_026916472.2
length 1393
RNA type mRNA
GC content 0.53
exon number 8
gene id hs2st1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18501538 ~ 18586226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATGCATCGCTACCTGACTTCACACAGCGACGGTACACCGAGGAATAAAACCCAAGAGCCAGAGGAaaaccgcacacacacatacacacacacatacacacactctctctgagGCAGCAGCATCGCGGAGAGCTCGCGACTGTGGAGCACTTCAGCCAGGCAAAGCACCTGATCCAGTGTTCCGGCTGTGCTCGTCGCGCGCATGTGTGTCTGATCCGCGATTTCTGAGCCTGCATTTGCGGCATGACATGCAGATagatcatcctcatcctcatcatcatcaccatcatcaccatcatcatcctcctgtAGTGTGGTTTAATGGGGCTCCTGAGGACCATGATGCCGCCCAAGTTTCAGCTCCTGGCTCTGGTGCTTTTCGCGCTGGCCATGCTCTTCATCGAGAACCAGATCCGCAAACTGGAGGAGTCCCGAGCAAAGCTGGaGCGCACTATGGCCAGGTTGGAGCTACGTGAGGTGGAGCAGAGGCAGAATCATGACACAGTTCGTGAATCCCCTGCGCTTGCAGAGATTGATGATTTGCTCATCATCTACAACCGCGTGCCCAAAACTGGCAGCACGTCCTTCACTAACATCGCCTACGACCTTTGTGCCAAGAACCGCTACCACGTTCTGCATATCAATACCACCAAGAACAATCCAGTCATGTCCCTGCAGGATCAGGTGAGGTTTGTTAGGAATGTGACGTCCTGGAAGGAGATGAAACCAGGGTTTTACCACGGACATGTAGCATACCTGGATTTCTCCAAATTTAGCGTGAGAGCAAAGCCCATCTACATTAACGTAGTGCGTGACCCTATTGAGCGCCTGGTGTCCTACTACTACTTCCTGCGCTTCGGAGATGACTACAGGCCCGGCCTGAGGCGGAGAAAGCAGGGAGACAAAAAGACGTTTGATGAGTGTGTGGCATCAGGGGGATCTGACTGCGCTCCAGAGAAACTCTGGCTGCAGATTCCATTCTTCTGCGGCCATTCCTCCGAGTGCTGgaatgtAGGCAGTCGCTGGGCTCTGGAGCAGGCCAAGTACAACCTGGTGAATGAGTATCTGCTGGTGGGAGTGACGGAGGAGCTGGAGGACTTCATCATGATGTTGGAGGCAGCACTGCCCCGTTTCTTCAGAGGAGCTACTGATCTCTACCGCACAGGTAAGAAGTCCCACCTGAGGAAGACTAGCGAGAAGAAGCCTCCAACTAAAGAGTCCATTTCCAAGCTGCAGCAGTCGGATGTGTGGAAGATGGAGAATGAGTTCTATGAGTTTGCACTCGAGCAGTTCCAGTTCGTCCGCGCTCATGGTGTAAGAGAGAAGGACGGAGAGCTGTTCGTGCTGGCGCAGAACTTCTTCTACGAGAAGATCTACCCAAAAGTGAACTGa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34718 lncRNA downstream 49941 18452468 ~ 18452976 (-) True G29439
TU34596 lncRNA downstream 354168 18148228 ~ 18148749 (-) False zgc:153916
TU34503 lncRNA downstream 660097 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 660097 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 788552 17700761 ~ 17714365 (-) True G29223
TU34829 lncRNA upstream 28131 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 28643 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 47852 18634078 ~ 18634357 (-) True G29551
XR_004579394.1 lncRNA upstream 207799 18794025 ~ 18816812 (-) True LOC113537624
XR_004579395.1 lncRNA upstream 207799 18794025 ~ 18807890 (-) False LOC113537624
XM_026920882.2 mRNA downstream 38346 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA downstream 38346 18449257 ~ 18464571 (-) True lmo4b
XM_026917991.2 mRNA downstream 307289 18148285 ~ 18195628 (-) True zgc:153916
XM_026927028.2 mRNA downstream 376005 18116405 ~ 18126912 (-) True lrrc8c
XM_026927315.2 mRNA upstream 29751 18615977 ~ 18623608 (-) True LOC113534471
XM_026912723.2 mRNA upstream 102372 18688598 ~ 18691082 (-) True sox14
XM_034312132.1 mRNA upstream 233831 18820057 ~ 18835789 (-) True hdlbpa
XM_026927091.2 mRNA upstream 330399 18916625 ~ 18927201 (-) True stk25a
XM_026916714.2 mRNA upstream 371547 18957773 ~ 18961671 (-) True dtymk
TU34546 other downstream 430008 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 553199 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 973602 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1222744 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 3033688 15461950 ~ 15469229 (-) False oxtr
TU34886 other upstream 207806 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 230033 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 230901 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 794215 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 800216 19386442 ~ 19386513 (-) True trnap-cgg_1

Expression Profile