RNA id: XM_026916618.2


Basic Information

Item Value
RNA id XM_026916618.2
length 2933
RNA type mRNA
GC content 0.49
exon number 9
gene id usp1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22035213 ~ 22046458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCAGTGTGTAGCAGGGCTTTCGGCTAATGCTATCGTGGCTAGCTGTGTTGTGGCTCAAGTACAAACTGTGGTCTATTAGTGCGATACACAGGGAGTAAAAGCAGTGGCTCGTGCACCCTCTGTAGCGCACTATGTGTTGGATAAGGAGCTATTTGGGATGTAGCCGTCGATGCGTgcTTGCTTGTCGGATATCAGTAAAATGCCAGGTGTGCAGAGTGAGGGAGCTGCAGTAGGTGTGGGGAGTCCAGGCAGGAAAAACCGCCTGTCTCTAAAGTTCCTGCAGAGGAAAGAAACCAAGCGCGCGCTCGACTTCAGTGAGCCTCAGGCTGAGGAAGCCAGCTCTGCAGAACCAGCACACACCACAAGCTGTGATCAGGTTGTGCCAGCTCCTTGTCCCTCATCTCTTCCCtgtggaaaaagagagagccTTGTACCGTTTGTTGGCCTTAACAATCTGGGAAACACCTGCTACCTTAACAGCATCCTTCAGGTCCTGTATTATTGCCCTGGTTTTAAAGATGCTGTTAAGTCATTGTATCAGTTGTCCAAGTTAaaggacaaacagaaagaagatGGTGTCAAAAGTGAAGAGGGAGACTCGTCTGAAGACTCAATGCCTGTTCACATGGAATTACTGCACAGCTTCCAGAGTTTAATATCTTCAGTGGAGCAGCTGCAGTCCAGTTTCCTGTTTAACCCAGACAAATATAACGAAGGAGAGCTGGCTACACCCCCACGCAGAATACTCAATACACTCAGACAGCTGAATCCTATGTATGAGGGCTATCTGCAGCATGATGCCCAGGAGGTACTGCAGTGCATCCTCGCATATATCCAGGAGGCCTGTGACACCATTAAGAAAGAACTTAGAACCAACCCAGATGAAAAACCAGTAGAGAGTGGGATAACAGATAGGATAACACCTACccaagaggaagaggagagctCTGATGGACAACTTAGTGGGAAAAGGAAGAGTGATACAGAAGTGGGCAATGCCAAGAAGAAGCCCAAGTCTCAGAGCAAACCCAAGAACAGCAATGAGGTGAGCAGACCTTTCACCCGCTCAAAGAGAAAATCCTCCAGTGATGTGGCTGGAAATTCTGTCAGTGACCAGAGGGATGTGGCAGAGAAGGACaaggaggagaaagagggaaGAAGTAACgcagaggaagagaagagcGAAGGAACCGCAAAGGAGGCGAATAAAAGGAAGAAGAGGGCAAAACTGAACTGGCTGAAACCTTCAGGGAAGCAGCCCAGTATTTTCTCCAAATTCCGCAGCACGGGTCGAATCAGCTCTCATGTGGGAGACAGAGCAGAGAGCAAGGACCAGGATTCGGGCAGCAGTGAGCAGCACCAGGGTAAAGCCACTCCCAAAAGTGAGACCACCATACAAAATCAAACTGCATCAAAGACAGAAGCAGAACTCCAGGGCTTGGATATGCTGAAGCAGCTGTTCCAGGGTCAGCTGGTGCTGAGGACGCGCTGCCTGGAGTGCGAGTGCTACACTGAGAGGAGAGAGGACTTCCAGGACATAAGTGTACCAGTGCAAGAGGATGAGACCAGCTCAGAGGCCAGTTCAGAGATTTCCCCAGATCCTAAGCCAGAACAGAAGACTCTGAGGTGGGCCATCTCTCAGTTTGCGTCAGTGGAGCGGATCGTCGGTCAGGATAAATATTTCTGTGAGACCTGTCACCACTACACTGAGGCGGAGAGGAGTCTTCTGTTCGACAAGACCCCTGACGTTGTCACCATTCACCTCAAGTGTTTTGCAGCCAGTGGCTCtgaGATGGACCCATATGCTGGACTGTCAAAGGTGAACACACCTCTCCTCACTCCCCTCAAACTCTCCTTGGAGGAATGGAGCACACGAACCTCTGCTTCCCACCAGAAGCACCATTACAGACTCTTCGCTGTGGTGATGCACAGCGGAGTGACCATCAGCAGCGGCCATTACACCACCTACATCCACATGATGGACCTCCACCGCACCAAGCTCGAGCTCCAGCCTCAGGAGGAGAGTCAGAAAGAGGAAGATGGAGAGACAAAACCACTGAAGAAGGAAGATGTTTCTTCACCTGACTATgatgatggtgaggtgtccTTCAGCTTAAGCTCCAAAGTGAAGACTACGATTAACGGAACGAGTTTGTCAGGCAAAGCCGGAGCAAAGAGGTCTACAGAAGGGGTCAGTCTACTGGGAGGCCAGAGAAGCATCTCAAGCTATGAGATCGGCTCCAGCAAGCAGGCCGCTTCAGAGAAACCTGCTAACGTGGCCACTTTCACCAGTTCACCTGCGAAGAACGGAGTGGTGAAGAAGGAAAGGGATGCAGAAGGAGATGGTGTGAAAGAAGAGAGTCAGGTGAGCTTGGACATGGCTTTACAGCACCTTCTGGACTATGAAGGGAAGTGGATGCTGTTTGATGACTCAGAGGTGAGGCTGTTTGAGGAAGAAGAGTTCCTACGTGCATGTTCTCCTGAGACCTGTTCCACCTCCACACCTTACCTCCTCTTCTACAGGAAGGTCTCAGGAGAAATGAACTGAGTGGCAACTGGACCACATCCAACATTTAGAAAGAACCTTCTTGTCATGGTTGCAGAAGAAACAAGCTAAAGACGAGGTTAAggtttaaaggaatactccagggATGAGAAATTACTCTGTCTGCCATATGTGAATCATGTGTCATTACCACAGACAAGCATTTCAGCATGGACACTGTAGTGATGGAGTGGACAGATCATACGTTTATTAGGGTAGAAGTTTGTGTGCTACCAGTCCCAGTCCCATAAAACTCTTGACTATGGTAATCGCACATGTGCTTCAAACGCAGATGgccattctgtttaaaaaatgctcGCGTATTCCTTAaacagctggtgtgtgtgtgtgtatttttatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37144 lncRNA downstream 419538 21615321 ~ 21615675 (-) True G31492
TU37138 lncRNA downstream 422391 21569856 ~ 21612822 (-) True G31486
TU37143 lncRNA downstream 426046 21607396 ~ 21609167 (-) True G31491
TU37141 lncRNA downstream 431350 21602544 ~ 21603863 (-) True G31489
TU37132 lncRNA downstream 502754 21532248 ~ 21532459 (-) True G31481
TU37369 lncRNA upstream 58003 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 84230 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 127156 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 150399 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 178190 22224385 ~ 22226660 (-) True G31742
XM_026916652.2 mRNA downstream 38492 21993695 ~ 21996721 (-) True angptl3
XM_026927983.2 mRNA downstream 67004 21957535 ~ 21968209 (-) True atg4c
XM_026923416.2 mRNA downstream 209739 21822742 ~ 21825474 (-) True foxd3
XM_026921318.2 mRNA downstream 219534 21796560 ~ 21815679 (-) True alg6
XM_026928315.2 mRNA downstream 257263 21764915 ~ 21777950 (-) True pgm1
XM_034314533.1 mRNA upstream 98008 22144203 ~ 22150238 (-) True LOC113538524
XM_034314538.1 mRNA upstream 111513 22157708 ~ 22199634 (-) True LOC117599932
XM_034300900.1 mRNA upstream 272940 22319135 ~ 22322050 (-) True mafaa
XM_034311953.1 mRNA upstream 281260 22327455 ~ 22390555 (-) True zc3h3
XM_034311946.1 mRNA upstream 344058 22390253 ~ 22392793 (-) True LOC117599264
XR_004580163.1 other downstream 503785 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1569962 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 3854535 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4034954 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4584634 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4593638 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile