RNA id: XM_026916676.2


Basic Information

Item Value
RNA id XM_026916676.2
length 1564
RNA type mRNA
GC content 0.49
exon number 11
gene id zgc:103559
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18970308 ~ 18976937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAAAGGTTTTGATTGGGGATGAGGTTCGACCTGCACTCATCACCATAAAGGAAGGGAAGATTGATAAAATCCTGTCTGATCCAGGTGCTACTGCACGCGCAGGTGGAGAGTGTGCagtatgtgctgtgtgtgtaggtgctggATGTGGGCGACAACGTGGTGATGCCAGGTTTAGTggactgtcatgttcatgttaatgaaccgGGCCGTACTACCTGGGAAGGCTACTGGACTGCAACACAAGCGGCAGCAGCGGGAGGGGTGACTACTATCGTAGACATGCCCCTCAACAGCATACCACCAACCACAAGCCTTGTGAACTTCCATGAAAAGCTACAAGCTGCTACTGGACAGTGTTTTGTGGACACAGCATTCTGGGGAGGCGTTGTCCCTGGAAACCAGCCGGAGCTGAGGCCTATGGTGCAGGCCGGAGTGGCTGGATTTAAGTGCTTTCTCATCCACAGTGGAGTTGATGAATTTCCTCATGTAAGCGAGGAGGAACTGCATGCTGCAATGAAGCAACTCCAGGGCACAGAAAGTGTCTTACTGTTTCATGCAGAGCAGGAGGTCCAGCCACCTCTGGCAGAGGATGGTGATCCATGTGAGTACTCAACATTTCTGAGGTCCAGACCTGATGTCATGGAACTGGAGGCCATTCGGACCGTTACAAAACTCTGCCTGCAGTACCAAGTTCGATGCCACATTGTGCACCTGTCATCAGCCGAGTCTCTGGAGCTGATCCGAGCAGCTCGACAGGCTGGAGCTCCATTAACAGTGGAGACGACACACCACTATCTCACCCTGAACTCAGAGAACATCCCATCAGGGGCCACACAGTTCAAGTGCTGTCCTCCCATTCGGGACAGAGCCAACCAGGAGCAGCTGTGGTCTGCACTAAGAGCTGGTGATATAGACATGGTCGTATCTGATCACTCTCCCTGCACCCCTGACCTGAAGCGCTTGGACACTGGGGATTTCACCCAGGCATGGGGCGGCATTTCTTCTCTGCAGTTCGGCCTGCCTCTGTTTTGGACCTCAGCTCATAAGAGAGGTTTTGCTTTTCCTGATGTAGTCAAACTCCTGTGCAAAGAACCTGCACGTCTCTGTTGCCTTGACAACCAAAAAGGCAGTCTCATGCCAGGTCACGATGCAGACTTAGTCATCTGGGATCCAAAGAAGGAATTTATAGTAAAAGAGGAAAACATACATCACAAAAATAAACTAACCCCATATCTTGGTCTGACCTTATGCGGGGAGGTAAAGGGTACCATAGTTCGGGGAAAACTTGTGTACGTCAATGGCTCATTTAGTCCTCAGCCACTAGGACAGAGTTTACTCATAAATCAGACTCTAAACCGGGCTTCCCTGTGAACCTCCCTCACTTCAACCACTTACTGCACATCCCAAGATTTCTTCCAGTCTTTCCTACATTTTTGAGGagtatttctttctcttcatgGGTGCTGTAAGGATGCGGGGCTATTGATTTAAGGGCATGTAAAGCCCACTATGACATGCTTGTGATTTTGGACtgtgtaaattaaatttgattttacTTAAAA

Function

GO:

id name namespace
GO:0000256 allantoin catabolic process biological_process
GO:0050897 cobalt ion binding molecular_function
GO:0004038 allantoinase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34949 lncRNA downstream 74503 18890717 ~ 18895805 (-) True G29614
TU34947 lncRNA downstream 83297 18883984 ~ 18887011 (-) True G29612
TU34889 lncRNA downstream 163558 18794032 ~ 18806750 (-) False LOC113537624
XR_004579392.1 lncRNA downstream 163958 18794025 ~ 18806350 (-) False LOC113537624
TU35046 lncRNA upstream 7441 18984062 ~ 19049735 (-) True G29678
TU35173 lncRNA upstream 282329 19258950 ~ 19259178 (-) True G29793
XR_004577309.1 lncRNA upstream 406693 19383314 ~ 19385251 (-) True LOC117596148
TU35304 lncRNA upstream 427787 19404408 ~ 19404621 (-) True G29905
TU35482 lncRNA upstream 561300 19537921 ~ 19540054 (-) True G30062
XM_034310739.1 mRNA downstream 857 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA downstream 861 18964293 ~ 18969447 (-) False agxta
XM_026916714.2 mRNA downstream 8637 18957773 ~ 18961671 (-) True dtymk
XM_026927091.2 mRNA downstream 43107 18916625 ~ 18927201 (-) True stk25a
XM_034312132.1 mRNA downstream 134519 18820057 ~ 18835789 (-) True hdlbpa
XM_026924570.2 mRNA upstream 395809 19372430 ~ 19376164 (-) True im:7152348
XM_026923318.2 mRNA upstream 567531 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA upstream 567531 19544152 ~ 19552693 (-) True bcl6aa
XM_026918863.2 mRNA upstream 980096 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 980096 19956717 ~ 19983297 (-) True tbc1d23
trnap-ugg other downstream 153110 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 153978 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 163558 18794032 ~ 18806750 (-) False LOC113537624
trnae-cuc_6 other downstream 393013 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 897399 18070987 ~ 18072909 (-) True G29279
trnap-ugg_1 other upstream 403820 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 409821 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2487240 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2487240 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2487240 21463861 ~ 21531428 (-) False raver2

Expression Profile