RNA id: XM_026917064.2


Basic Information

Item Value
RNA id XM_026917064.2
length 4484
RNA type mRNA
GC content 0.40
exon number 16
gene id slc38a3b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8922124 ~ 8953564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTTCTCAAAACATTTTCCGTGTAACACAAGAGGGAGAGAGCTGCAGTTCTTAGgaaaaccacattttttttattaaaaaaaaaaaaaacggcgcCTGGAGAAGCAAAGAGGTGTAATAACGCGTTAACAGAGGGAATAAGTGGAAGGCAGCACAGCTGTATTTGTTTATTCGTCGACTGAGGTGGGAGACGTATTCTCTTGCATGGAGCCTGTCCAATCAGAGATGAGCATCCTGGTTAACGGGAAAGGTCATGACGTTGGGGATGATATGAATGTGACGATGAAGACAATAATAGAGGAAGACCCATTTGATGATCCTGATGGAACCCTGGCTGAAAATGTGGAGTTTCTGCCTGGCGGTGAGGGCAAAAAGCCACGTTTCACTGATtttGAAGGGAAGACCTCTTTTGGCATGTCCGTCTTCAATCTCGGCAATGCCATTATGGGCAGCGGGATTCTGGGTTTGGCATACGCCATGTCCAACACCGGCATCGTCCTCTTTTTGTTCCTTCTCACGGCAGTTGCTGTTCTTTCATCCTACTCCATTCACCTCTTGCTAAAAGCCTCCGGTGTTGTGGGAATCAGAGCCTATGAGCAGCTGGGTTTCCGGGCTTTCGGGACACCTGGCAAAATGGCAGCTGGAATTGCTATAACACTGCAGAACATCGGCGCTATGTCCAGCTACCTGTTCATTGTTAAATCCGAGTTTCCTCTGGTCATCCAGGCCTTCTTGAGGGTAGATGCCAACTCTGGAGAGTGGTATCTGAATGGCAACTACCTGGTGGTTCTGGTCTCTATAACTGTGATTCTGCCTTTGGCCCTCATGAAGCAGCTCGGTTACCTTGGTTACACCAGTGGCTTCTCTCTCAGTTGCATGGTTTTCTTCCTCATTGCGGTCATCTATAAGAAATTCCACATCCCTTGCCCATTCGAGGAGTTCTCTGCTAATAGTACAGCCGTCCACCTGCTCACAACCGATTTGCCATTGACTGATAGTCACCATGATGGACATGTGGTGGACGATGCACACTGCTCTCCCCGTATGTTCACAATCAACTCTCAGACGGCATACACCATCCCAATTCTTGCCTTTGCCTTTGTGTGTCACCCTGAAGTGCTGCCCATCTACACTGAGCTGCGCAACCCAtctaaaaagaaaatgcagcagGTATCCAACATCTCCATCTTCATCATGTACGTCATGTACTTCCTCGCGGCCCTGTTTGGCTATCTGACCTTCTACGAAAACGTGGAGGCCGAGCTGCTGCACACCTACAGCAAGATTGAACCCTACGACACTCTGATCCTGTGTGTGCGATTGGCTGTGCTCACAGCTGTCACGCTGACTGTGCCAATTGTGCTGTTCCCGGTGCGCAGGGCCATTCAGCAGATGATCTTCCCCAACAAGACGTTCAGTTGGATCCGTCATATCATCATCGCCATCACCCTCCTCACCCTCATCAACATGCTTGTCATCTTTGCACCGAACATCCTCGGCATCTTCGGAATTATCGgTGCTACTTCTGCTCCCTGCCTCATCTTCATCTTCCCTGCCGTCTTTTATATCCGCATTGTCCCCAGAGATGATGAGCCCATGCTCTCCACACCCAAAATCCTGGCTGCCTGTTTTGCTGGTTTGGGTGTACTGTTTATGACTATGAGTTTGAGCTTTATCATCATCGACTGGACTACTGGAAGCAGCAATTCTGCTGGTGGCCACTAGAGGACAGttcaagtttgtgtgtgtgtgtgtgtatgtgtgtgtgataaggggagtatattgaaaaaaattactgttaTATAGCAGGTTGAGCGAGGCTCAACTGAAGcacatttttgtatatttcttttttttgtttttagtgtaGCTCTCTGTTCCAGcaccaaacacacctgaaccaGGTGATCAACacagttaaaataaaaccaaacaaaaaaacaacaacagggaagctaaaatagaaatgaacattttagtGGATGAGGGCTCATAAGGACAGGCATGGGAACCTATGGGGTTCAGGGTGCATTAGATTCCCGAGAATCTAAAAAACTAGCAGGCTAATTGCCTTGAATTGCTATTTGAGAGAAACTTGCCATGGCTCTGAACCTTCAGGCTTCAGTCTCGGAtaattcagtattatttttttaaggcatCCTCACCTGCCTTTCAGAATGCTCTGctcttgtttttcttcatgCTTTCTCCATCTgctttcagttttcattttattcagatCTACAGCTAGTTCTGTATAAAACAACGTTTTGTAATGCTTCATACAGTAgcatagataataataataataataataataataataatttgatttgtacttttttatgAAGTCACCCATAGGAGTGAcgtgttatagaaaatttagAAACTTTAGTATAGAAATGTTAGTTCTGTTTTGGAGAATGAAGGATTGGATAAAGTCACATGTTGGAAGCTGCAGGCTGTTCTCCAAGAGACAGAATATTCATTTGTAGTAGCTTTGGATCTAACTGTAGTCATGTTTCTGAGCATTCCTTTCCTTCATGCTCTCAAGTGTTAGCATTGAATCTACGAGgagtgtatgcatgtgtgtttatatagaccaatatcatcagctgctgttagagaaacaGGACCGTGGTGCTGAAGTCATCTTAAATATATCACACTGGAACTTGTACTGTTCCTCTTAAAGTACAAAAGTTCCTTCTGTATCTGCGAAGAGCACAATACGGGGCGACAGATTggagattcacacacacacaaacaataagttaagaaatatttattatgatgtatgaaatattttttaagtcaTTGGGTGAGTTTTTGAACCACAAACGTCTGTAGATTGTATTTAACcatataattattttcagtaTTCAAATGAAATAAGTGACTTATGGAGAAGGTTTAAAAAGAGGTAGCTTGTAAATATTGTGAAGATCATAAATGAAGCTATACACATGAATTTTGACAGAATACGACTTGTAGGAATAacttgtttgtgtattttatatggATTAAACAAAACCTCCTCTTTTCTTCCTGTGCCTGTGCTGTTTTGAGGTGTTTAATGTGACTTGTGCCTTAAGGATATTCTCAGTAAAGGAGAGTCTTTGAGTGTTATGTGATTGTTAGTAGTTGTGGAACCTGAACTGAAATGTACTTGGTGTCTATGGGCCTTTCTGTGCTGGAGCAGCAACAATGACTGTTCATATACGCGGTGTTTAATATCCGTAGTGTCAGTCACAGATGCCATTCGGAACGGTTCTGTTTAAAcctgtgtgtgaaatttaaaacaaaatataaaagcattatACTTCTAGGTGTTGGAAATGAAGAAGAATGGCTTCAGAGTCAGTTGCCATCACCTTCATCCAACACCAGGAACACTGCTTAAGTGACAAACTGACATCTGTTGTTaggaaaaaaacatcttttttgcGCATAGATCTTAATGAAAAGAATAATATTTTGACTCCTTGCTGATGAGAATGGCTAACGGGTTGAGATTTTTCATTAATGTCCGTACTCTGACTTGAAATCTTTGAAAACTAGGTTGTTTCATTGAAAACAGCATTCAAAGATTCGTGCAAGATATTTAAAGATTATCGCCAACAGGGTGATCAAGACTATGCTATGAAAAACAGACGAATGGCTGTAGCTATATTTCCATACAAATGCTTTTACGCGAAGTGGTAAAATTTGCAAAATTGGTTTCAATggtattaaatcattttatgcTTGCGTGATGTGAGGGAAAATGGTTAAGAAGAACTTAGATATAAGTTTTGGAAAGGCACTCACTGAATAAACAATACAGCTGTGATATACAGTACGGTGTGTAAGATAATGATGAATGACCAGGATAATTTTGTCAGTTaatgttcttatttttttttaaatccaatattACAATTACAAACTTTACAAAACTACAAATGTTCCCAACACAGCTCTTGAATATTGGCATTGTTCTCTGTTGTGTTAACTTGTTCACAGGATGTACTTGTAAAAGTAGTAAAAGTGATTTACAGACGTGATTTACAGAGTTTATGGAAACAGTTTATTTCGACTAATTTACATCACTTAGTTTTCGTGTAATATTGAAAGACAGTGGGCTATTGTTAATGTGTTTGGCCTATTTTATCTGTTCTTGGGGTCCTTTTTCTATACACTGTAAATCTGTTCTTTTGTTCATCTAACCAAACACTGCTAATGCTCATCAGGAAGCCTGAGCTCATACCAAAGGATCTTAAACATCCAGAGTTTTCAATGTGTTAGAAAGCCACTCTATACAATTATCCCATTGTTACTTATGATGATGTTAAATGAATCCATGATTATTCCCTTTTTGTGACTACGTGGTGGTAATACACAACTGTAAACACCCCTTCTGTTTATGCCTGTCAAGCTTGTATAGTGTAAATAGCAGAACTGGTTTTAGTTTaccaataaagaaaaatatttagttGTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28192 lncRNA downstream 229974 8691939 ~ 8692150 (-) True G23758
XR_004579952.1 lncRNA downstream 405265 8511307 ~ 8516859 (-) True LOC117599540
TU28052 lncRNA downstream 432478 8489164 ~ 8489646 (-) True G23643
TU28050 lncRNA downstream 433366 8488514 ~ 8488758 (-) True G23641
TU28037 lncRNA downstream 438095 8481051 ~ 8484029 (-) False tcta
TU28424 lncRNA upstream 50725 9004289 ~ 9004512 (-) True G23973
TU28428 lncRNA upstream 66505 9020069 ~ 9021558 (-) True G23977
TU28447 lncRNA upstream 116842 9070406 ~ 9070769 (-) True G23991
TU28529 lncRNA upstream 326358 9279922 ~ 9286655 (-) True G24073
TU28543 lncRNA upstream 376916 9330480 ~ 9330828 (-) True G24087
XM_026913318.2 mRNA downstream 7038 8860372 ~ 8915086 (-) True gnai2b
XM_026937315.2 mRNA downstream 69014 8849982 ~ 8853110 (-) True inka1b
XM_026912993.2 mRNA downstream 347362 8569347 ~ 8574762 (-) True gnat1
XM_034312653.1 mRNA downstream 349294 8569347 ~ 8572830 (-) False gnat1
XM_026921828.2 mRNA downstream 437977 8481049 ~ 8484147 (-) False tcta
XM_026915833.2 mRNA upstream 19605 8973169 ~ 8982021 (-) True rbm5
XM_026921180.2 mRNA upstream 59112 9012676 ~ 9037333 (-) True gnb1b
XM_034299359.1 mRNA upstream 109961 9063525 ~ 9072606 (-) False si:ch211-161c3.6
XM_026912553.2 mRNA upstream 109961 9063525 ~ 9069558 (-) True si:ch211-161c3.6
XM_026912527.2 mRNA upstream 109961 9063525 ~ 9069557 (-) False si:ch211-161c3.6
TU28035 other downstream 437943 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 438010 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 438095 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 656895 8262619 ~ 8265229 (-) False mitfa
TU26888 other downstream 2442113 6479402 ~ 6480011 (-) True G22591
TU28673 other upstream 481999 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 761963 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 909803 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 1535729 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 4285140 13238704 ~ 13238806 (-) True LOC113537313

Expression Profile