RNA id: XM_026917581.2


Basic Information

Item Value
RNA id XM_026917581.2
length 894
RNA type mRNA
GC content 0.48
exon number 2
gene id gpx1b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15276905 ~ 15278713 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTGCTCGCCTCACCGCCCTTCGACCCTTCGTGAGTGGTATAGAGTGAGTTTATTTTCTTCGTCGAGTTTTGTTTGCGCTTTGTTGAGTAGAGTTTGCTCCCAAACATGGCTGATATAAAGTCGCTTTACGATATCACAGTGAAGACGCTGACAGGAGAGGAGTTGAAGTTGGCGTCTTTACAGGGTAAGGTGGTCCTCATCGAGAACGTGGCGTCTCTCTGAGGCACAACCATCAGGGATTACACCCAGATGAACGAGCTCCATGAGCGCTTCTCCGCCAAGGGACTCGTGGTTCTGGGGGTGCCCTGCAACCAGTTCGGCcatcagGAAAACTGTAAAAACGAAGAGATCCTGATGTCGCTGAAATACGTCCGTCCCGGAAATGGTTTCGAGCCAAAATTCCAGCTCTTGGAGAAGGTCGACGTGAATGGGAAAGACGCTCACCCGCTGTTTGTCTTTCTCAAAGAGAAGCTTCCGTTCCCCAGCGATGAGCCGACGGCGTTAATGGGCGACCCCAAATGCATCATCTGGAGTCCCGTGTGCAGAAACGACATCTCCTGGAACTTTGAGAAGTTCCTTATCGGCCCAGATGGTGTCCCATTCAAGCGTTACAGCAGAAGATACCTGACCTCTGACATTGAGGGAGACATAAAGAAGCTTCTGGGCATTGCCAAATAAAGCGTTTGTAGTAGTATGGTCTTTCATAGCTGGTTGTGCTCTCTTGTGCACGATGCTGCTGTGTTGGGACTCTTACTTGATGAAGATGCTCTTTTAAACATTGTGAAGGGCTATCTGATGTTCTGTAAACATCCCAACTCCACAGTTGCATAGAGCTTCATGTATGGCACAACAAGCCCTTTTGTGgatcaataaatattatttttaatcctt

Function

GO: NA

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32777 lncRNA downstream 30552 15244315 ~ 15246353 (-) True G27801
TU32670 lncRNA downstream 125856 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 130750 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 146645 15130003 ~ 15130260 (-) True G27699
TU32615 lncRNA downstream 211694 15064885 ~ 15065211 (-) True G27652
TU32884 lncRNA upstream 104201 15382914 ~ 15384090 (-) True G27904
TU32925 lncRNA upstream 193628 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 199077 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 225119 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 336312 15615025 ~ 15616748 (-) True G28173
XM_026929254.2 mRNA downstream 237302 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 244343 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 244404 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 245260 15025127 ~ 15031645 (-) False zmynd10
XM_026929263.2 mRNA downstream 252372 15010827 ~ 15024533 (-) True LOC113535748
XM_034314036.1 mRNA upstream 183360 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 183360 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 183360 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 226931 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA upstream 226931 15505644 ~ 15568428 (-) False rad18
XR_003403256.2 other downstream 400915 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 400915 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 884554 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1218460 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1369716 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 18596 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 177922 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 183237 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 1994242 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2234999 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile