RNA id: XM_026917595.2


Basic Information

Item Value
RNA id XM_026917595.2
length 5426
RNA type mRNA
GC content 0.52
exon number 19
gene id btbd8
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17583651 ~ 17614589 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGGAGAGTGGGAGGTGTCGGCGTCTGAAGAACCTCTCACCAGAGCCATTACTTCATACTCTATGTAGTGCTCCTACGTAGGCAGTAGCGAGTTGTTTGCCTTCCTGTCATTTCCCGGGTTATTGTAGCTTTTGCACTAACAGTGAAAGACAGTAACTGGTATGGAGGCAGGCGGGAGTGCAGGAGTAAATCTCCAGCCATGAGGACAGCAGAGGAGCTATGGAGTGTTTGTTACCTGGTGTCTTACAGAATTCCAGAAAGCCCCTTGAGATCCTGGCTGCATGCTGACTGAGGAGTGTTAGGCCGCAGTGATGCTCTCCACCGAGACTGTCCGAGAGCTCCAGACTAAAGAGCGCAAACACAAGAGCGGCCTGAGTAAACGGCTGGCCAGTGCCCTGTCTTCAGACCTGAATAGGCTGTTGCAGGAGGAGCAGGAGAcggatgtgagtgtgtgtgtgagctcaggTTTCCGGCTCAGGGCCCATAAGGCTGTGCTGCTGGCTCGAGCTCCTCACCTCCTCCAGGGAACCGCACCAAATGCTTCCATCATCAACCTGCAGGGAACGGAACCTACTGCACTCAAAGAGCTCATTCGGAGAATCTACACAGATGATAAGTGCATGGGGAAGGGGACTGCTGCCTCTGCTGGACTGCATGGCCACTCACTGCTCACAAACGGCACCGTggtggaggaggatggagagtTTCACGCCAGTGCAGATCCAGacTCTGTGCGTTTAGAGCCAGCGTCTGGGCTCGGCGCTGATCTTTTGGCCCTGTATGAACGAGGTGAATCCTGTGATATCAGCATCCAGGTGGGAGACAGAGTCTTTTCAGCTCACAGGGCAATTCTTTGCGCTCGATCTCAGTACTTTCGAGCAATGTTGTGTGGCAGCTGGATGGAAAGCTCACGCCAGTGCATCACACTACAGGGtctgGGCCCTGATGAGATGGAGGTTCTTCTACACTTTATGTATGGAGCCATACTGGATCTTCCACCAGGGAGCAATGTGAGTCAGGTTGTCTTGGCAGCGGACATGTTGGGTCTGGAGGGACTGAAGGACGTGGCCGAAATGGTTCTGACCAGAGACTATTGCAGATTTTTCCCTAAGCCTGTTGAAGGAGTGCAGAAGAGCATACTTGAGTGCCTTGCCATCAGCCATTCCATTGGTCTCCACAATCTCTACAGCTCATGTGTCAGATGGGTAGCTGAACATTTTGTGAAGTGCTGGTCAGAGAGGAGCTTCTCCATCCTTCCTCCTGAGCTACAGAGGGACTGCCTTAACACGGTCACTAAAAAcatgacaGTGCAGACCTCGGTGTCGGTGCTGTGTGGTACTGAGCAGCTGATTGGCTCTTTGCCTGAGGTGAAGTGGGCGAAGCAGGTTATGTGTTTGGCCACTGAGCTCCAGGAGCATTGTTTACACACCATCGTCACACATCTGCCCCGAGTAATACACACCACTGCCTTCCACAGCCTCCGCAGGAGTGAAGAGTTTACACGTGACCCCACGCTGCTGAGGAAGGTGTGTGTAGCTGTGCGGGAAGGCGTGACCGTGGAGAACTGCTGTGAACTCTTCAGCGCAGTGGACCAACTGAGCGGACAGTCAGACGCAGACATACTGACGGCAGAATCAGCCTATCAGGGGCAAGAGAACATGGAGCCCTTCAGACGCGAGGTGTGTTTGCTGCGTGCACGGCTCTGGACCTTTCTGCTTCAGTCATTCTTTGCAGTGAGACACACGAAAGGATGGGAAACACTGCATCCCAGACACCGGGAATGGATTCTTGCAGCTACTCTTGATACTGGTGACTGCAGAAGACTGAGTAAAAAGCCTGTCCTTACCAGCTCTCAGCAGAAACTTGGGAAATGTCCTTCAGGCTCATCCTCTCCCTGTGAGAGTCCTCCGACCTCTCGGCCTCTGAAGGCCCTCAGGGGCCCACGTCCCTCCGCTCAAAACACCGTAGCAGCCACGAGTGCCATGAAGTCCGATAGTCTGGGCCCGACAGCTGCCACAAAAACCAAACCTGGCACCAGTGACTCAAGCCGGGCCAAGACCAGCAGCCCGGCTAAAAAGAAACCACCCTCCACCACTAAAGCTGTGCTGAACGGCAGTGTTGGCCCCACGGTCCGGCGGGAAAACTCTACTGCTAATGGCACATCAGGCAAATCACTCCAGGAAAAAAGTGTTGCACCACGTACCAGGCCCAAATCTGCCCCCACTGGGGTGACCGGGGCAGTGAGTAAGGCTAAAGCGAGCAAAACCACAGCATCAGGGAAAGACTCGACTCAGGGCTCCACCCCTGACAGCCCTGGGAATGTCCAGTGTTCCCAAACCACACCCTCTACATCGGGCAGCGTCTCACCAGAGAGCAGCGTTAGCAGTCCCCGGAACATCAGCAGCCAAGCTCTCAGGCCAAAGCCCCAAGCCATGGCAACAACAAGATCCCCTCTGACCAAACCTGTCCAGAAACCAGAGAAGGACAAGGCTAATAGCCCCATtaataaagcaaacaaaccCAAGAGCACAGTGAGCAGCAAAGCAGCCGTGAGTGTGGGGGCTGCAGCTCGTTCGGAGCCAAAGAGCAAGGGTACTGCTTCGGGATCTTTAGAGAACAACGCTTCACCACGACCTGGTTCAGTCCTGACCAACAGAAAGCCTACCTCTCCCAGGAAAGAGGACGAAAAAGATGGTTCCAAGCTTTCAACCACAAGGAAACCAACAAAATCAAACACAGATTCAAAATCTAACGCCAAACCAGCCAAACCCACTGTATCATCATCTAAACCATCTCCAGCTACTACAAATAAAAGCGGACCCAGTAAGAAAATTCCAGAAACTTCAGCGGTGAAATCTTCTCCCAAATCTGTGATGCCATCCAAACAGTCCTCACTTGCTGCCTCCAAAAAGCCAGCTGCAGCAGAGAAGCATTCAGCATCTAACCCAAAACACTCAGTGGCCCCCCAGCATCTAAATGATACTACAAAGGAAGTGAAGGCTCAGGCAAAAAGGGAGGAAGAGAGGTCCACTCAAGATGAGAGCCCCAACGCTCCTGTGTCAGCTAAAGGAAATTTGGATGTTGGCACAGGTCTACCCGAGCAGCATTGCACTGTTCAGGATTCTGTACCCCAAGCTGCTATGGTAGCCTCCACAGAGTCTTTTGTTGCTAAGAAAAATACCAGTCCACCTGTTGAAGCCAGCAGTTCTGACAAgaaacacactacagtacaggAAGCACTACAAAGCCACATGAACTCTTCCACTACAGACAGTCTAAAGAGTGAGGTTGGTGGGAGTAAAGTTCCTCCAGGCCATACCATTCTTCCTCATCTTAGCACTGGAGCTACACATGGAATCACTTCCCAGAATCACTCCAGAGAGTCAGATTTTCCCCCTGACACACCATGCAGCTTGGGAAGCACAGACACCCCCCTGGAGGACTCATGGAGTGGGATCCACCCTCAAGTCAGTCCTGAATCGGAGACAGCCAGCGCCACTACATCCTCGGACGACATCAAGCCACGCTCGGAAGATTATGACGCTGGTGGCTCGCAAGATGATGACTGCTGCTCACACGAGCGCGGTGCAACTAAATGCGGGACGATGCGATGCCCTGACTTCTTGGGCCGGAGCAGCAGTGACACCAGCACTCCAGAGGAGCTGAAGATATACGAGGGTGGGGCCGGGCTGCGAGTAGAGGTGCGACTCAGGGGCCGTGAAGCAGAGACTACAAGTGAGGAAGAGGCAGGGCATCGGAGGCCACAATCCTGGATAAGATGTGATGAGGTACCTGTGAAGGAGGAGCAGGGCAAGATGGATGACACCTTAACAAATGTGAAGAGTGTGCCAGAACACCAGCTCTTCTCTtctgaggaagaagaagaggaggaggaggaagaagattCTGAAGAAGAAAGGTCCGAAGTGGAAGTTTTGCCTGGTGGCATTGCGCCTCCTCACGCAGAACCATCGCCACAATACCAGGGCATTGTCAACCCGGCGTTTGAAGATGCCGCTGAGCAAGAGAATGAGCATGAATACCAGCCTACTTCCGGTTTCCACCGCTCTGTACTGCTCTCGGTGGATGAGTGTGAGGAGCTGGGATCTGAGGAAGTGGGAAATGGTGATGTCTTTGAGAGTGATATGCCTCAACACACCCAGGCTAAATCCTGTTCCCAGAAGCCCACCAGCACAACAAAGGACAACCAGAAGCCGGACCCTAAATCCCTGGTGTTCCATACAGGGGTCCATGAATCTCCAGTCCAGGATGCATGTGTGCTTAATCGGTCAGGCCCTTCCCAGCTAGATACAGACTTAAATGAAGTCCCTTCTCAGGAAAGACCCAGTCACCTGGACCTGCGGCTGGCCGAGCAGTATGGCAGCTCGCAGTCTAAGCAtgcagagagcaagagagcagAATTATGGCTAGACATACCTGAGGCTCAGGTGACTACAAGCTCACCTGCACACTCTGCCCAGTCCCCAGCAGGGGACTTTGAGGGTTGTGACAGATTGGATCAAAGCTGCACACATGACCGGCGCCCATCTAAAGTCCTGTCCCCCATTTACGAGATGGATGTAGGAGAGGTATTCGAGCAAAGCTTGGACACGAACAGGACCAAGGAAGAACCGCAGGACGAGACTCATAAGGACGAAGAGGGGacggaaaagaaaaaggaggacaACGAAGAGGAGGATGAGACCACTAAGTTTGCAGATCGTGACTGGAGCTTGCTTCGGCAGCTCCTATCTGAGCAGGAGTCGAGTCTTGGTGTGATAAACCCAGTCCCCGAGGACCTGAACCTGGCTCAGTATTTGATCAAGCAGACCCTGTCCCTGTCTCGAGACTGTGTGAATGAGCAGGCCTTTGCTCATCATGAGAAAGAGATTCAAGGTTTCAAGCGCTGGGCTGAGCTCATCTCTCCAATGGAGGACTCTACCACCAGCATCACTGTGACTAGCTTCTCTCCGGAGGACGCTGCCTCTCCGCAGGGAGAGTGGACCATCGTGGAGCTAGAGACGCACCACTGACGAGGATGAACGTCTTTTTGTGTAGGGAGTTTTGGAGTACTGCATTTTCTTCCCTCTACACTGACATGTGGATGTTTCTACTTCTTTTTAAGGGACGACAGGTAACCTTTTTCGGCTGTACATTAACTTATTTCATGAAGTTATATCTTCTAAGGTACTTAACAAAGAGTGGACTGATGGACTTGATGTTGATTTGCATGTGGACATTTTTGTATAAGTTATACCGTTTTACTTGGTGTCGCTTTGATCTTTGTAGAAAACGAAAAATGCATACCTGTTGCACTTTCTGTTAAACAATTGTTAGACAATGGCTTTGACAAAGGATTTAGTATATGTAGTAAGTATGGTGCTTTACATCCATTGttgtatgtaataaaaaatatagttaTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 54447 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 72196 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 115494 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 149483 17433453 ~ 17434168 (-) True G29174
XR_003403015.2 lncRNA downstream 154171 17425604 ~ 17429480 (-) False LOC113528975
TU34475 lncRNA upstream 22738 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 86172 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 169886 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 224973 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 533639 18148228 ~ 18148749 (-) False zgc:153916
XM_034298787.1 mRNA downstream 4132 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_026917713.2 mRNA downstream 16328 17550936 ~ 17567323 (-) True scinla
XM_034300500.1 mRNA downstream 36517 17543676 ~ 17547134 (-) True LOC113528309
XM_026917804.2 mRNA downstream 43746 17530559 ~ 17539905 (-) True dr1
XM_026917841.2 mRNA downstream 54353 17473446 ~ 17529298 (-) False si:dkey-44g17.6
XM_034310162.1 mRNA upstream 3527 17618116 ~ 17632144 (-) True ephx4
XM_026917783.2 mRNA upstream 3527 17618116 ~ 17632142 (-) False ephx4
XM_026917624.2 mRNA upstream 22561 17637150 ~ 17656210 (-) False brdt
XM_026917633.2 mRNA upstream 22561 17637150 ~ 17656210 (-) False brdt
XM_026917615.2 mRNA upstream 22561 17637150 ~ 17656210 (-) True brdt
XR_004577384.1 other downstream 54336 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 303478 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2114422 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2122650 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2284632 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 334568 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 456398 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 962635 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1179443 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1201670 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile