RNA id: XM_026917640.2


Basic Information

Item Value
RNA id XM_026917640.2
length 3657
RNA type mRNA
GC content 0.49
exon number 20
gene id brdt
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17637150 ~ 17656210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAGCTGCTGGAATGAACGATAGTCGGATACTTGTGAAGAAGCTTAGCGATGGCCAACGGAAAAACCCATAAAATTAGGCAACAGGGTCCATacagaggaaaaacaaatcTAGAGATAGGTGGTAGAATGTTCTAGAATGGTCATGTGATGTCACGAGACCAGTTATGTCGCACTTTTGAAAAAATACTCTGACGTacgtctttgtttttttttttacgatttCTAAGGTCGGGtacttaatataatttatttttagtagCTTTGATTGCATCCTGAGAGACTGACTGGTAATAAAAATGCTTTCCACCGTGTTACTCTTTGCTTATAATCGTGCTTATTTTCCTCTCAAAcgaaaagagaaggagaaccTGGGCACGTGAAGGGTATTGGCCAATCGGAGGCCGACCTCCGAGCAGAAGGGTATAAATAGCGGGCATGTTGCTGTGAGAGACGTCCGCCATTGAAGACTGGTGTTTGGAAAAAGGcgaattatttgtttttagaagTTTATTTCAAAACTTAAGTAGAGTTTGTATCCGGACGAAACAGTCGTTCAAGAGCCTGCTTTTGGTCATCTTTTCCAGCAGAACTTCTTCGGCACTGTTAAAAACATTCTTTGTTGTGCCAGTGACGGAAAGTGGCACAGGCAGAGGATGTGTAATGAATGCTGAGGTGGCCAGACATAGCTTCAGAACATCTCTCTGCAAACGCCTGTCTTTGGAGCAGAACCGACCACGTCAGAGCCGGTGCTCAGCATGAACAGGAACCCCCCTCCCCCCGAGTACAAGAACCATAAAAAACCTGGGCGCCTCACCAACCAGCTCCAATACCTGGAGAAAGTGGTGGTCAGAGCTCTGTGGAGGCATGAGTTCTCCTGGCCCTTCAGGCACCCTGTGGATGCTGTTCAGCTCAACCTGCCTGATTATTATACAATAATCAAAAACCCAATGGACTTGAACACCATCAAAAAACGTCTTGAAAATAATTACTATTGGAAGGCTTTGGAATGTATTGAAGACTTCAACACAATGTTTACAAATTGTTACATGTACAATCGGCCGGGAGATGACATAGTTTTGATGGCCCAAGCCCTTGAGAAGTTGTTTCTCGAGAAAGTAGCTGAAATGCCCCAGGACGAGTGTGAGATCATAGCAGTTACCAACAAGGCGCCTCTGAAAGGAAGGAGGATGTCTGCTGCAGGACTGGGGAAAATGCGGCCTCAGTCTCCTGTGTCTGAGGTTGTGTTTCAACAGACAGTGACTGTCATCCCTCCTGAGGCACTGCACACCATCTCATCCACGCCCCTGTCTGCGCAGCTTGAAGCCAAAttaaaaaagggggtgaaaagaaaagcagacacCACAACCCCCACTGCCCCCGTCCTTACCAGCAGTGAGTCATCTCCCTGTGTCTCAGAACCAAAGGTGCTGAAGTTGTACTCACGGAGAGGCAGCGGGCGACCCATCAAACCACCACGTAAAGACCTGCCCGAGTCACCACAGCAGCACCAGGTGGGGCGCAGGGCCAAGCTCCCCGAAAGACTTAAATACTGTAGCGGTATCTTGAAGGAGATGTTCGCCAAGAGGCACGCTGCCTACGCCTGGCCCTTCTATGAGCCCGTGGATGCTGTGGCACTCGGCCTGCATGACTATCATGATATCATCCATCAGCCCATGGATTTGGGCACCATTAAAAAAAAGATGGACAGTCGTGAGTACACAGACGCCTTGCAGTTTGCTGCAGACATTCGTCTTATGTTCTCAAATTGTTACAAATACAACCCACCGAACCACGAGGTTGTGGCTATGGCCAGAAAACTCCAGGAGGTTTTTGAGTCCCGCTTTGCTAAGATTCCAGATGAGCCGGGACCTTCGGCTCCTAGCCAGCACCTTGCGCccaaaagggggaaaaatgagCAAGCAGAAAGTCCATCCAGCTCTGAGAGCAGTGACTCGGAGTCTTCTTTGTCAGAAAGCTCGTCTGACTctgaggaagatgaagagaaaAGAGCACAAAGACTGTCTATTCTGGAGGAACAGCTAAAGGCAGTGCGGGAGCAACTGCAATTACTGACCCAAACACCTTTGctgaagcaaaagaaaaaagagaagtcaaagaaggagaagagaaaaaaagaaaagcgaAAGGGTGGTGAAGTGCGGAAACCAGCCCCAGAGAAAGTGCACAAGAGGTCGAGTAGCAGCAAGTCATCAGGGAGGAATATAGAGAGCAAAGGGTACGAGTCTGAAGAAGAAGAGCTTGCTCCGCCCATGTCCTATGAGGAGAAAAGGCGTTTGAGTCTGGACATCAACAAGCTGCCTGGAGACAAACTAGGCAAAGTGGTGAATATCATCAAGGCCAGAGAGCCTATGCTTAGAGACACAGACCCTGAAGAGATTGAGATTGACTTTGAGACACTCAAACCAACTACGCTCCGAGCTCTGGAGACATTTGTCATGACCTGCCTCAGGAAGAAGCCTAAGGGGCCTGGCCAGAAAATTCCCCAAAAACCCAAAGGTGAAAAGACAAAGGAGATGGGGAAACAGAATGCCAGCGAAGAGCTGAACTCGAACAAGAGGACCAAAGCAAAGAGTGAATTTATGGCAGCAGAGCCCAAGGAGCTAGCGCTCTCTTCCCGCCTTAGTGAGAGCAGCAGTTCCTCCTCCAGTTCTGACAGCAGTAGTTCTGACTCTAGTTCTTCTGATAGCAGTGACTCTGACTCAGAGCAGAAAcctaagaagaaaaacaaagcccATGGTCATGGcaccaaaattaaaaacaagGCGTTGAAGAAGAGCATTGCCCTTGAGATGAAGGAGTCCTCTAAAGACCCGTCTGAGCAGGCCACCAAGCCACCTGCTGAGGAGGCCAAAGCGCCGCCAGGTTTCCCTGCTCTCCTTTCTCCACTATCCACTCCTCCTGGACTGCCCTCCTCAAACTCTGCAGCACCTATGGCAAGAAACCAGCCCATCACTAAGCAGGAGTGTCCCAGTTTGTCCACCCCATTGGCAAATGTGAAGGAAGATAAGGGAGACCCAGGTGTAGTGGGAGAGTCCTTTGCTCAGCTGCACCCAATGCCTGGGACTAAACCCACAGAAGATGGTGAACCGCACAAATCCAGCCAAGATCACAAGCCCAGCATGGCTAAAACGGAAATTGTTCTGAAGCATGCAGACTCCTGGACAAGCCTGGGCAAGATGGCCACTCTTGCTCCCTCTGCCATCCGGTCATCCAAGGAGAGTTTCCAACAATTCCGCAAAGTTGCCATGGAGAAGGAGGAGCGAGAAAGGGCACGTAAGCTCCAGCTGGAGGCTGGCCGAGAGAGGAGTGGCTCAGACAAAAGCAGCCTGACGCAGCAGCTTTCTAAGGCCAAACCAGAGATCCAGGCTTCCAGGACAGAGTTGGAGTCTGCAGAGCTTCCCATTATGGCAGCCGTCTTAGACCAACCTAAAACGCCAGAACCTTCTACTCCTACCCTGTGCTCCATGGACCGTGAAAGAGAGATGGCACGcaagagagagcaggagagacgCAGACGGGAAGCTATGTCTGGAACCATTGACATGACCATGCAGCATGACATCATGGCCACCTTTGAGAAGAATCTCGACTGAAatgactgtaaaataaataaataaatttaaaaaactgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 107946 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 125695 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 168993 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 202982 17433453 ~ 17434168 (-) True G29174
XR_003403015.2 lncRNA downstream 207670 17425604 ~ 17429480 (-) False LOC113528975
TU34488 lncRNA upstream 44553 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 128267 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 183354 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 492020 18148228 ~ 18148749 (-) False zgc:153916
TU34718 lncRNA upstream 796260 18452468 ~ 18452976 (-) True G29439
XM_034310162.1 mRNA downstream 5006 17618116 ~ 17632144 (-) True ephx4
XM_026917783.2 mRNA downstream 5008 17618116 ~ 17632142 (-) False ephx4
XM_034313144.1 mRNA downstream 22561 17583651 ~ 17614589 (-) False btbd8
XM_026917595.2 mRNA downstream 22561 17583651 ~ 17614589 (-) False btbd8
XM_026917601.2 mRNA downstream 22561 17583651 ~ 17614589 (-) True btbd8
XM_034312426.1 mRNA upstream 138430 17794638 ~ 17795351 (-) True LOC117599332
XM_026924048.2 mRNA upstream 427513 18083721 ~ 18090316 (-) False znf326
XM_034311248.1 mRNA upstream 427513 18083721 ~ 18090316 (-) True znf326
XM_034314495.1 mRNA upstream 437959 18094167 ~ 18106279 (-) False lrrc8db
XM_026920117.2 mRNA upstream 437959 18094167 ~ 18106279 (-) True lrrc8db
XR_004577384.1 other downstream 107835 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 356977 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2167921 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2176149 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2338131 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 292949 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 414779 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 921016 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1137824 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1160051 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile