RNA id: XM_026917713.2


Basic Information

Item Value
RNA id XM_026917713.2
length 2822
RNA type mRNA
GC content 0.48
exon number 17
gene id scinla
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17550936 ~ 17567323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggatggagggagaggaggagacacAGAGGCTGTTCACTTCCTCCTTATAAACAGTGCTCATGAAGGTGGGGCTTTTACACCTCTCCAGCTTCTCCATCCACATCCAGCAGTCACTCAGTTCATCAACAACACAGAGAGATCATGGTGGTCCACAAGGAGTTCCAGACTGCAGGGAAACAGCCAGGCCTGCAGGTATGGAGGGTAGAAAAGATGGACCTGGTGCCAGTACCCAAGCAGCTCTATGGCAACTTCTATGTTGGAGATGCCTACATCCTTCTCTACACCACTCCTGCTCCATCCTACGCCATCCACATCTGGCTTGGGAATGAGTGTTCCCAGGATGAGAGTGGAGCTGCAGCAATCTTTGCTACCCAACTGGATGACTTCTTGGGTGGAAGTCCGGTTCAGTTCCGTGAGGTCCAGAACAACGAGTCCCTCACCTTCCTTGGCTACTTCAAGTCCGGTGTTAAGTATAAGCAAGGTGGTGTGGCCTCTGGCTTTCATCACGTAGTGACCAACGACATGGATGTGAAGCGATTACTCCACGTTAAAGGGCGGAGGGTGATCCGTGCCACTGAGGTTCCTCTGTTATGGACCAGCTTCAACCGCGGAGACTGTTTCATCATCGACCTGGGCAAGGACATCTATCAGTGGTGTGGCAGTGAGTGTAACCGATTTGAACGTCTGAAAGCATCTCAGGTGGCCATGGACATCCGTGATAACGAGCGTAATGGTCGTGCCAAGCTGCAGATGGTTGAGGAGAACACGGAGCCGGAGGCCATTACTAACGTTCTTGGACCTAAACCCGACATCCCGCCAGGAAGTGCCGATGATGAGGCTGTTGACAGAGCCAACAAAAAGGGCACTCTTTACATGgtttcTGATGCTGCAGGCTCCATGAAGGCCTCTCTGGTGGCTCAGAGTAGCCCATTCAAACAGGAGATGCTTTCTCCCAATGAATGCTACATCCTTGACAATGGAGTTGATGGCAAAATCTTCTTGTGGAAAGGTCCGAAATCTAATGAAGCTGAACGTAAGGCGGCCATGAATGCCTCAGAGCAATTTATCAAAGACCATAACTACCCTAAAAACACCCAGATCCAGGTGTTGCCTGCTGGCGGGGAGACCACCATGTTTAAACAGTTCTTCAGCAACTGGAAGGATAAGGATCAGACCACGGGCCCAGGGAAGGCCTACACTATTGGGAAAATTGCCAGAGTGGAGCAGATCCCCTTTGACGCATCTAGCCTGCACTCCAACAAAGCCATGGCTGCTCAACACGGCATGGTGGACGATGGCTCGGGCAAGCTGCAGGTGTGGCGTGTTGAAGGTGGGGAAATGGTTCCTGTGGACCCCTCCACCTATGGTCACTTCTATGGAGGAGACTGCTATCTGATCCTCTATAGCTACAAACAGGGAGGCAGAGAGCAGCATATCATCTACACCTGGCAGGGGCTGAAGTGCACGCAGGATGAGTTGGGTGCTTCTGCCTTTTTAACAGTCAAATTAGATGACTCCATGGGAGGATCTCCTGTGCAGGTGCGTGTCACTCAAGGCCAGGAACCGCCGCATTTGATGAGCCTGTTTAAGGGCAAACCGATGCTCATCTTCTTGGGTGGGACTTCACGAAAAGGCGGGCAGAGCAGTACAGGAAGTACACGTCTCTTCCATGTCCGCCAGAGCTCCACCCGTGCTACACGCACTGTTGAGGTGGAGCCCTCCGCCGCAAATCTGAACACCAATGATGTGTTTGTGCTGAAGTGTCCAAACTCCATGTATCTGTGGAGAGGAGTTGGGGCCACGGATGAGGAGCTGGCTGCTGCCAAATATGTTTGCAGCTTCCTGGGTGGCAGCGTTACTGAAGTGGCTGAGGGGAAGGAACCAGcggGGTTCTGGTCTGCTCTTGGTGGAAAGAAGGACTATCAGACCTCCAGCAGTCTGCAGAAGACAGTTAAACCACCTCGCCTGTTCGGCTGCTCCAACAAAACCGGCCGTCTCATTGCAGAGGAAGTGCCAGGAGACTTCACTCAGGCTGATTTGGCCACCGATGATGTCATGCTTCTGGATACCTGGCACCAGaTCTTTCTCTGGATTGGTAATGAGGCCAACGAAGTGGAGAGGAGCGGAGCAGATAAAATAGCTAAAGACTATGTGAACTCCGACCCCTCTGGTCGTCGTGGCACTCCCATCAGCATCATAAAGCAAGGCTTTGAGCCACCCACTTTCACTGGCTGGTTCCAGGCCTGGGATGGTAAAATGTGGGACAAAGACCCTCTGGAACGTATCCGTGCCGGTTTCtgaacacactcatacacacgcaGTTTGCATGGCTTTCCAAATACACGCAAGCGCTGCTGTCTGCCATAAGACAAGTCTGCTATCTGAGAAAGCTATAGATTAACAACAAAAACTATGTTATGCACTAGTCACTATATACACTGTCATGTCATTTTTTCGTTAAATATATGCTTTtggcttattttttaaatgcggaaagttttaaacatacagttaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattggctAAATCTATGCTAAAACTAAAAGTAAGAACATAACCAATGtgttctgtatttaaatatgGACTTCATGGGCATTcaaattgaaatatttaaaaattaaatcttcAAAAATTGTCAAAATAACATCTCAAAATGTTAATTTACATCTACCAATAATTTTCTACAAATGCAGAATAATGTGAACACATTTCTGATATTGAAATATGCTGGTTCATAATAAAATGTGCATCTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 21732 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 39481 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 82779 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 116768 17433453 ~ 17434168 (-) True G29174
XR_003403015.2 lncRNA downstream 121456 17425604 ~ 17429480 (-) False LOC113528975
TU34475 lncRNA upstream 70004 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 133438 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 217152 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 272239 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 580905 18148228 ~ 18148749 (-) False zgc:153916
XM_034300500.1 mRNA downstream 3802 17543676 ~ 17547134 (-) True LOC113528309
XM_026917804.2 mRNA downstream 11031 17530559 ~ 17539905 (-) True dr1
XM_026917852.2 mRNA downstream 21635 17473446 ~ 17529301 (-) False si:dkey-44g17.6
XM_026917861.2 mRNA downstream 21636 17473446 ~ 17529300 (-) False si:dkey-44g17.6
XM_026917841.2 mRNA downstream 21638 17473446 ~ 17529298 (-) False si:dkey-44g17.6
XM_034298787.1 mRNA upstream 10068 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_034313144.1 mRNA upstream 16328 17583651 ~ 17614589 (-) False btbd8
XM_026917595.2 mRNA upstream 16328 17583651 ~ 17614589 (-) False btbd8
XM_026917601.2 mRNA upstream 16328 17583651 ~ 17614589 (-) True btbd8
XM_034310162.1 mRNA upstream 50793 17618116 ~ 17632144 (-) True ephx4
XR_004577384.1 other downstream 21621 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 270763 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2081707 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2089935 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2251917 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 381834 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 503664 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1009901 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1226709 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1248936 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile