RNA id: XM_026917735.2


Basic Information

Item Value
RNA id XM_026917735.2
length 5075
RNA type mRNA
GC content 0.41
exon number 8
gene id pbx1b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17220584 ~ 17294005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTGTAACAAAAGCGAGAGGATGGACCGAACTGAGAGCGGCTGCTTGTAGAGTGTTGAGTCCACATCGCACCCAGTGTGATTAACCGGAGCACGGTGAGACAGTTTTCACTTCACACACGCGCTTCCGTTCACAGCTGAAGTGCAACCCGGCAGCAGAGTTCAGCTGGTATTTCACAGAGTCCACACACAAGCCTGCAcgctgtgtttttgtgttcacCGCTGACCGGGCGAGCGAGACAGACTGAGACGTCAGGTTAGCCGAAGCTGCAGGGAGAGGAAGCGGCAGACATGGACGAGCAGCCGCGGATGATGCACTCTCACGCCGGGGTAGGGATGGCGGGGCACCCGGGCCTGCCCCAGCACATGCAGGAGGGAACCGGAGCAGCCGACGGCGACGGCAGGAAGCAGGACATCGGAGACATTTTACAACAAATCATGACCATTACAGACCAAAGTCTGGACGAAGCGCAGGCCAGGAAGCACGCGCTGAACTGTCACAGGATGAAGCCCGCGCTCTTTAACGTTCtgtgtgaaataaaagaaaaaacagTGCTGAGTATCCGCGGCGCCCAGGAAGAGGAGCCTCCCGATGCCCAGCTCATGAGACTGGACAACATGCTGTTGGCTGAAGGTGTGTCGGGGCCAGAGAAAGGGGGCGGGTCAGCTGCGGCTGCAGCCGCTGCAGCAGCTTCGGGAGGAGCCGGAGCCGATAATTCAGCTGAACACTCTGACTACAGAGCCAAGCTCTCCCAGATCCGCCAGATTTACCACACCGAACTGGAGAAATATGAACAGGCATGTAACGAGTTTACCACTCACGTGATGAACCTGTTGCGAGAGCAGTCGCGCACACGGCCAATCTCACCCAAAGAGATCGAGCGCATGGTCAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACCTGCGAGGCAGTCATGATCCTCCGCTCCCGCTTCCTCGATGCCAGGAGGAAAAGACGAAACTTCAACAAACAGGCCACCGAGATCCTGAACGAGTACTTCTACTCCCACCTCAGTAATCCATATCCCAGTGAGGAGGCCAAGGAGGAACTGGCCAAGAAGTGCTCTATCACTGTCTCCCAGGTGTCCAACTGGTTCGGAAACAAACGAATCCGGTATAAGAAGAACATTGGAAAGTTCCAGGAGGAAGCCAATATGTACGCAGCCAGAACTGCAGTGAATGCGGCCAGCGTGTCAGCTCATGGCAGCCAGGCAAATTCCCCCTCCACCCCCAACTCAGCAGGTGGATACCCTTCGCCATGTTATCAGTCAGACAGGAGGATACAGTGATGGCCTCACAGCCAACCAGATGTACAGTCCGCAGGGCATCAatGCTAATGGTGGATGGCAGGATGCTACTACCCCCTCCTCAGTGACCTCACCCACAGAAGGACCCGGGAGTGTTCACTCTGACACCTCCAACTGATCCCCTCATCACCTCACTCCTTCTTGTTCCCTCACTACTGCACAAACCATGGACTCTCTTTTTGTTCTGTCACTCTCGGTCGTTCATCACTATGTTTAAGTAATGCACTCACTAGCTCACTAAGCTGGGTCTCTGCCATGCTTTGGAGTGAATCAATCTGTTctacccaaacacacacacacacacacacacagtttgtattCTTAAATACAGCCCTCGATTTGTATTAACCCCTtcagatctgattttttttctatcctcaattataattcattataattcttcaaaatcattattttcagtCTTAAATAGTATTTTGATGCAGCTCCTACAGTCAGTGGATTGAATGAAACATAACCAAACATAAACCATTATAACGAACATGGGGTCTGAAGGGGTTAATATGTATGATCACGCTACCTCTTagataaacaacataaaaaacaaatcataacAATAAACTGATTTCTAAAATAGAAATGATGGTGCATATGATGCCCCATTTTCCATAGCGGaaccttttcacatttttatcatGGTATGAAACCATGAACATTTTCTGTGTCCATAGTGCCAAagtatttttctacattttaacacTCATGATTTGCATGTTCATTTGACGTGATCATATTCTTCATGTTGTAATATAGGGACATACTGTATTATAAAGACATATTTTGTATCTCAGTCTCTCTCCATCATGTAACttgaaattgatttttaattagGCTATACAAACATCGCTTGTCTTTGATTCCTAAAAACctcctttctttaaaaaaaaacaaaacaaaacaaaaaaaaacgtttttgtTGCTTTCCGTGTATAATCTCCACCAGTGACAATGCAGTATAGGCCTTTGCAAATTAAGAAGTTTGTAACATCTGTGTCAGTCAGCTGATGACAATGAATTTAAGACAGTTCACCAAGTTATGTGATAAAAAACCcaactgcatcagttaaggaaGAGCCAAATGCTGCTGTGAACCAAAATCATTTCTGTAATAAGTGCAAACAGATTTGAACTTTAAAGCTACTGTATTTTACAGACTATAAGATGTTTTTAACCCTCTAGACGGTGCTCCgatttgtgtttttgcattAGCCTACCCATTGGTTATGGTTTAACATTAGGTGATTTACTTCAGCATTGATGGCAACAGAATGGTTAGCATTATGATTGAGAGAAGAGTACTTTCTGTAGAAGTCTTGATTAATTCTATGATTAACTGTAAAACTGTGACATGAATATAGAGTTTGATAAAGGTGTCTGTTCTATATGACTGTATGGTACACTACCATTAGCTTGGTGCTAACATAACATTTTTACAAGGCGCTACAGCGGAAATTAGCAATATTTTAGCGGCAAAGCTAAGGATGGATTCACACACAGATATTGTCCAGGCCTGACAGAGGGATTAAGATTCTAGCAAAGAAAACAGTAGAGTGCTAACCTACGGcaacactaacaggacaaaaCCATAGAAATGCCACTACTAATATGGCTTATAAAATGAAGTTATATATTTAGGAGGGAGCATCTTATTactccagagtgacttatagtccggaaaatacagtaaatgtgtcTATGTATTtacttatgaaatatttttcttttcttttttcctctaaatAACATACATAAAACAGCAGAGGACTTCACAGCTGCATATAATTAATCTGATTTTCTAATACAGTTGATGTGTGACTGTTGTGAAGTCACTTTATCATATACATTTTACCACATTTTTCATCCAACAACTGAAAAAACCCAACTGAAAACAACTGAACCTTGCTTTTAGTTTATGGTCTTTCTTGGTGACAACATATCACATATCCGTCATTACTTTGATACCAAAAACAGCAGACGTCCATTTTGTTTATCATCACCATTTTAACCACATTGTAAATGATGTATTATCTTCTGTATCTGGGCTTGTTTCTTAGCGAAAGCCCCAGTGCTTCGTATTCAAAACCAAAAATGCAGTCCGAATTCAGTAGTGTTTGTCGAAAGAAAACATGGcacaaaaatgcagaaaacatttGCGTATATTTTTACGTCGTCATGTTGTGAATAGCCTAATGCGCTTTTCTTTTTGGCTTCAGCTCTGTTACGAGACATTTTACTTTTCTTTGTGTGTTCTTGCTTTAGCATAATGTGAATTAGCCCAAGAATGCGCTATGTACGTAGATGTGCACCTTTCTATTCTTATTTTGCTCTTTTAAACAGAGTTTAAAACGATACATCTTGTGCTTCATATAAGCGTGAATCGGGTCTCTGATGGGCAGGCCATGTCTTCAAGAAATCGTTTATGATTTGATCAACATAATAGATATGAAATTCCTAAAGCAAAGTGACAAGGCTAGCGCTTGTGGCCAATTTAGAATAAAGTGTATAACTGCGCACTAATCTTATCACACCAAAAAAATCAAGTGTGTTGTGCATCACACATCGATTATGGTTCTATCTTGTTACTTGTAGCAAATCAACAAAGCTTTTTGTCACATTAAGCactgtaatttatttagttagatGCAACATCCATCACTAAGCTATATCATGACATTTTGTAATGAGCACCCATTAAGAAAGAGGGCCCTTTATTATCGTGTGTCAAGAGTCCAGAACAGTTTGCTGATTTCCTGATCTCTAACACACCTGCAAATGAGGTTTTAAAGGGACAGTATTGCCAAGAAGGAATATgtcatttttggccaaacttcCTTTAAGTAATGagttgaatgagtgtgtgttagaactGGCAAATCACTAAACAATGCTGGACTCTGGACACACTCCTTTTTGGCTACAGGAATCAGTCGGGTCCAGCTGTAACCAGCCAAAACAGCTCCATCTGCATAGATTATTATTCCTGTGTGAACTGTAGCTCCTCAAGAAAGCCTAATAGCAAGTGTTAGTGTAGACTATTCAGTTAGATGCACCATCCATCACTAAGCTAGATAACATTCAATAATAAACGTCCATGCTGATTTGTTGTAACCCAGAGAGGCCTAACTGTATGCCTGGAGTTTAACACACCTTCTAAACCTGGTCACTAGCTAATGAGTcaaatcactgtgtgtgttagagcaaaataaaaagtgctaaactccatccatccacacgGAAACACAGTTGGTCAAATCTGGGTTGAAGAGTGACATAATAACCCtgaacacactcatacacacgtCTCTTATCGCCTGCCCAGTTTCAGCGTATTGTTGAAAGCTTCATGTAATGATGCTTTTAGTTTTTGCATATGAAGCAATTTGTAAAACATCAAATGTTTACTTTGTTGCATGtcttttgttctttaaaaaatcctgcagtgtttttgaatgtttcttttttttgtttgtttttgtttttaataaataaataaatatatatatataaaagcggAGACTTTCTCTTGCTGAGTTTTAACTTTTAAGATCTCTGCATATGtataataaggaataaaaacggAACAGCAAATTATTGTCTTTTCAATTCCAACTTGTTTGTGAAGGAAAAAACTAACAAGGTGTAGGTTTTCTGGTCTCTTAATTTGTACTGGTAATGCATATTCCAAATAAATAGTTTCTTTTGTTGCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0001944 vasculature development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34351 lncRNA downstream 165928 17054088 ~ 17054656 (-) True G29119
TU33936 lncRNA downstream 649060 16570790 ~ 16571524 (-) True G28779
TU33657 lncRNA downstream 730669 16462102 ~ 16489915 (-) False G28537
TU33656 lncRNA downstream 756651 16462102 ~ 16463933 (-) True G28537
TU33626 lncRNA downstream 861063 16358139 ~ 16359521 (-) True G28508
TU34418 lncRNA upstream 99453 17393458 ~ 17394467 (-) True G29167
TU34417 lncRNA upstream 100761 17394766 ~ 17396199 (-) True G29166
TU34423 lncRNA upstream 129866 17423871 ~ 17429778 (-) True LOC113528975
XR_003403011.2 lncRNA upstream 131599 17425604 ~ 17429486 (-) False LOC113528975
XR_003403015.2 lncRNA upstream 131599 17425604 ~ 17429480 (-) False LOC113528975
XM_026930064.2 mRNA downstream 17335 17197989 ~ 17203249 (-) True LOC113536221
XM_026943221.2 mRNA downstream 29125 17186645 ~ 17191459 (-) True med8
XM_026913950.2 mRNA downstream 51233 17066355 ~ 17169351 (-) False szt2
XM_034312419.1 mRNA upstream 144635 17438640 ~ 17462625 (-) True sec16b
XM_026917852.2 mRNA upstream 179441 17473446 ~ 17529301 (-) False si:dkey-44g17.6
XM_026917861.2 mRNA upstream 179441 17473446 ~ 17529300 (-) False si:dkey-44g17.6
XM_026917841.2 mRNA upstream 179441 17473446 ~ 17529298 (-) False si:dkey-44g17.6
XM_026917804.2 mRNA upstream 236554 17530559 ~ 17539905 (-) True dr1
TU32920 other downstream 1751355 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 1759583 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 1921565 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 2344594 14872948 ~ 14875990 (-) False pxmp4
XR_004577384.1 other upstream 219707 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 655152 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 776982 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1283219 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1500027 18794032 ~ 18806750 (-) False LOC113537624

Expression Profile