RNA id: XM_026917783.2


Basic Information

Item Value
RNA id XM_026917783.2
length 1930
RNA type mRNA
GC content 0.50
exon number 7
gene id ephx4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17618116 ~ 17632144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAGATCCGATTGTGTTTAAAAGGTTCAGCTCGTGAATCGCTGCTCATCACGCCTTGCTCACGGGGCTGCTGTGAGGTTTACCACCATGTAGGCTGGTGTCGCTTACGAAACCCAAAGCACTCAGAGACACCAGCAGAGTCGACGCGGGATGCGAAGATGGCGAGGCTCCTCGGCCGCGTGCTGCTGCTGTCGGTGCGGCTCGCGGTGAAGCTCCGCGCCGCGGGCTACTGGGCGCTTATCTACGGATGCTGCGGCCTGTGCGCGCTCCTGGCGCTGCTCCGCCTCTGCTGGAACGTGCTCATGAGGCCGACCGCGACCTTCCGGTGGACTGTGCGCGAGACCCCGCCGCCCTGCCTCAACGACACGTCCTTGGGAACGCACTGCTACGTCAGGATCAAGGAGTCTGGCCTCAGATTTCACTACGTAGCTGCGGGCGAGCGGGGAAAACCACTCATGCTGTTTCTGCACGGATTCCCCGAGTTCTGGTTCTCATGGAGGCACCAGCTGAGAGAGTTTAAGAGTGAGTTCCGTGTGGTGGCTGTGGACATGAGAGGCTATGGCGAATCTGACCTGCCTCCCTCCACCGAGTGCTACCGGCTTGACTACCTCGTCACCGACATCAAGGACATTGTAGAGTATCTGGGATACAACAGATGTTTCCTGGTGGGCCATGACTGGGGTGGCATCATTGCGTGGCTTTTTGCTATTCATTATCCCGAGATGGTGGTGAAACTGGTCGTGCTGAACAGCCCTCATCCGTGTGTGTTCGCTGATTATGCTCTTCGCCACCCCAGTCAGATGCTCAAATCCAGttacttctttttcttccaGCTCCCACGCTTCCCAGAGCTTATGCTTTCCATCAACGACTTTAAGGCGCTGAAGAGTTTGTTCACAAGCCGGAGCACTGGGATCGGGCTTAAGGGCCGTTGGCTGACAGCAGAAGAACTTGAGGCCTACCTGTATGCCCTGTCCCAGCCCGGAGCACTCGTGGCTGCCCTCAACTACTACAGAAATGTcttcagTTTCCTCCCTCTCAATCAGAGCGAGGTGCGCTCGCCAGTGCTGCTCCTGTGGGGTGAAAGGGATGCTTTCCTCGAGCAGGACATGGCCGAGGCCTGTCGCCTCTACATCCGTAACCACTTCCGCCTGAACATCATCTCCGGCGCAAGTCACTGGCTCCAGCAGGACCAGCCTGATATCGTCAACACACTCATATGGACGTTCCTTAAAGAGGGAGAGGGACGGAAAAACTACAGGAACTGAGTCTTTAAAGAAAGGGGCCTTGTTTCACCCTATGCCTCGGCCCGCACACCTTCTAATTAATGCAAGCATCCTGTTTAAATTCAGCACATCTTGGATGTTAGTAAAACACAAATACGAAGCCTAGaggtgaataaaaagaaaagcacattttattagGAGAGGTTAAATAGAGAGTAGAGTGTCTGGTTGATGTTTCTCAAATTTTTTGCACATGACATTCGCCTTAAACTTTGTTGGTGACAACATTTGTGTGTGGCAAAAGTCTGCTCGTGAGTGAGTTGTATTGTGTGGTGCCTTTTTTGACCTGAACTTGTACCGTGTTGCGACATTAAAAATGTGCCGTGTGTGTTGAGTTTGATCTGTGGGATCGCTACGCTGTAATCCAGACAAATCTTTCAAGACCCCTAGAATCGCTCAACCTCTTTCAGGTAGTGTTGtcttaatgaataaatattgttcttctccttttttgtattttttaaagatacttGGCTCAGATATTTGAGAATGTGGTTATTTTGATCCTTCTGTATGATAAAATGAAAGTGATGTTTAGATATTGTACACTTTTTTTATCTCTTCCTACACGCTGCATATAAGAACGTCACTAAACCAGCTCTGCGCCATTTTGGTTTTATAAGCAAATAAATGATAACTCAAA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 88912 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 106661 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 149959 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 183948 17433453 ~ 17434168 (-) True G29174
XR_003403015.2 lncRNA downstream 188636 17425604 ~ 17429480 (-) False LOC113528975
TU34475 lncRNA upstream 5185 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 68619 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 152333 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 207420 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 516086 18148228 ~ 18148749 (-) False zgc:153916
XM_034313144.1 mRNA downstream 3527 17583651 ~ 17614589 (-) False btbd8
XM_026917595.2 mRNA downstream 3527 17583651 ~ 17614589 (-) False btbd8
XM_026917601.2 mRNA downstream 3527 17583651 ~ 17614589 (-) True btbd8
XM_034298787.1 mRNA downstream 38597 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_026917713.2 mRNA downstream 50793 17550936 ~ 17567323 (-) True scinla
XM_026917624.2 mRNA upstream 5008 17637150 ~ 17656210 (-) False brdt
XM_026917633.2 mRNA upstream 5008 17637150 ~ 17656210 (-) False brdt
XM_026917615.2 mRNA upstream 5008 17637150 ~ 17656210 (-) True brdt
XM_026917640.2 mRNA upstream 5008 17637150 ~ 17656208 (-) False brdt
XM_034312426.1 mRNA upstream 162496 17794638 ~ 17795351 (-) True LOC117599332
XR_004577384.1 other downstream 88801 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 337943 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2148887 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2157115 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2319097 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 317015 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 438845 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 945082 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1161890 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1184117 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile