RNA id: XM_026917804.2


Basic Information

Item Value
RNA id XM_026917804.2
length 2120
RNA type mRNA
GC content 0.43
exon number 3
gene id dr1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17530559 ~ 17539905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATAGCGCTAGAGAGGCGGGACTTGTCGGAACGCAGCACCGGATATCCTTCAGCCTTGCATTGTGGGATTGACTCTGAAGATCGCTATAACAACCGTGGGGGGAAAATTTAATATCGTAAAAGTAATGAATTAAATGCTGCTTCCGGGGCGTTTAATGCAATATAACTTAATAATGCCTCCgtttataattaatttagttCAATAGCCAAGTTTCTAATGTAACGTAATTTGTTTTGGTCGCGGGAATTCAACATTAATTAGTAACACGTTAAGATAGTGGAAACGCTTTCATACTCTTATACACCTTTTTATACTTGTAGTTGTACATTCCGTAtatttagttagctagctataagGCTTATACTTTATCCGTCTTgattagtgctttttttttgttttgttttgtttttttaaactagtccAACCTGTCAAAATTAAGCCAAGACACTGGGGAAGGCAAAGCCCAGCTCCTTCACTGCACCGATCTGGCTTCCGTCTCTTTAAACGTGGTGCACTAGCTTGCTGGATAAGTTCCCGTGAAATCAAAAGTGAGTTCAAAGGTAAAGAATGGCTTCCTCGTCCGGAAACGACGACGACCTCACCATCCCGAGGGCGGCCATCAACAAGATGATTAAAGAAACGCTTCCCAACGTGCGGGTGGCCAACGACGCCCGGGAGCTGGTGGTGAACTGCTGCACCGAGTTCATCCACCTGGTCTCCTCCGAGGCCAATGAGATCTGCAACAAGTCTGAGAAGAAGACCATCTCCCCAGAGCATGTCATCAACGCACTTGAAAGTCTTGGTTTTGGATCCTACATAGCGGAAGTGAAGGACGTTTTGCAGGAATGTAAGACAGTCGCGCTGAAGCGGAGAAAGGCCAGCTCACGTCTGGAAAATCTCGGCATCCCAGAAGAGGAGCTTCTCCGCCAGCAGCAGGAGTTATTCGCCAAGgcgCGGCAGCAGCAGGCTGAACTCGCCCAGCAGGAGTGGCTGCAGATGCAACAGGCGGCACAGCAGGCTCAGTTAGCAGCAGCAGCTTCAgccactgcagctcaacacgcTCGATCCTCCCAGGAAGACGACGAAGAGGATGacatgtgctctctctctctctctctctctctctctctctcgctatctctctctctttgtctttctgtctcaatCGCAGTATCCGTTTATATTGACTTTTTAGAAATTACCATGGCCAAGACGGCTGTTTTATTTGGCCCTCCCCTTATGTCAGAATAGCgttagacttttttttccctacttttatttttcaaagaCATATTTCTTCTTCATGAATTCCTGCTTTTGTTTCAgacagttaaatattttaaggCACCATACTGTATGTGAATTATCGTTTTTTGGACTTTGAGTCGTATGATATATTGGGGGCAGAAGATGCGTTACGTTTAGTTGTTCTCGGTTTGGTGCAGGAATGAGTGTTTAAACTCAAATGCCTCCTATTTTAGGTGTCCTGTAGATTTCTTGctctttgtttttgtaaaatagttGAGTTAAGAGCTTTCTTTTTTCCGGAGAATTGATTTTTACAGCAATCGTTCCTTCCCTGTCTTGCTCTGTGTGTTAGGCAGAGAGCTGATCTGGGTTGTaaagtaggatttttttttttttttttccccattttagTTTAAGTCAGTAAGAGTACAGTGTACGTAGGATGCAGCTTTTGTCTGGCCTGTGTTCAGAACAGTATTGAAAGGAGAAATACAGAATGATATCTGTCTCTTTAGTACCAAAGATAGAGATGAAACTTCAGTCACCAGATAGTCTTAAGAAACCTCTGGACAGTTTTACACTCTTTACAGAAGGAAACTCTGGTCACTGATGGCACTGAACTATGCCACCGTCAGTGTCCCTATATTGATAGCAACTatcaaactgtaaatgttttcatatctGAGCAGAAGGTTTTCGttcctctgtatctctctggTGCAGTGTGTAGAAGTTGCATTGTGAATGTGTGGTCAATTCTTATCTCGTAAAGATTGGTAAGTTTTAGTTGAGGCACGTGTTCACATGGCTTCGCAGGAGCTGTAAGCTGTATTCTCTAAGCAATAAAAGTCAACATGTTTTATAAACTAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21751 DR1, NC2-beta; down-regulator of transcription 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34442 lncRNA downstream 1355 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34457 lncRNA downstream 19104 17487361 ~ 17511455 (-) True G29196
TU34432 lncRNA downstream 62402 17454285 ~ 17468157 (-) True G29176
TU34426 lncRNA downstream 96391 17433453 ~ 17434168 (-) True G29174
XR_003403011.2 lncRNA downstream 101073 17425604 ~ 17429486 (-) False LOC113528975
TU34475 lncRNA upstream 97422 17637327 ~ 17638017 (-) True G29213
TU34488 lncRNA upstream 160856 17700761 ~ 17714365 (-) True G29223
TU34503 lncRNA upstream 244570 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA upstream 299657 17839562 ~ 17842820 (-) True G29237
TU34596 lncRNA upstream 608323 18148228 ~ 18148749 (-) False zgc:153916
XM_026917852.2 mRNA downstream 1258 17473446 ~ 17529301 (-) False si:dkey-44g17.6
XM_026917861.2 mRNA downstream 1259 17473446 ~ 17529300 (-) False si:dkey-44g17.6
XM_026917841.2 mRNA downstream 1261 17473446 ~ 17529298 (-) False si:dkey-44g17.6
XM_034312419.1 mRNA downstream 67934 17438640 ~ 17462625 (-) True sec16b
XM_026917735.2 mRNA downstream 236554 17220584 ~ 17294005 (-) False pbx1b
XM_034300500.1 mRNA upstream 3771 17543676 ~ 17547134 (-) True LOC113528309
XM_026917713.2 mRNA upstream 11031 17550936 ~ 17567323 (-) True scinla
XM_034298787.1 mRNA upstream 37486 17577391 ~ 17579519 (-) True si:ch73-389b16.1
XM_034313144.1 mRNA upstream 43746 17583651 ~ 17614589 (-) False btbd8
XM_026917595.2 mRNA upstream 43746 17583651 ~ 17614589 (-) False btbd8
XR_004577384.1 other downstream 1244 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 250386 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2061330 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 2069558 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 2231540 15297309 ~ 15299019 (-) True G27843
TU34529 other upstream 409252 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 531082 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 1037319 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 1254127 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 1276354 18816259 ~ 18816330 (-) True trnag-ucc

Expression Profile