RNA id: XM_034313469.1


Basic Information

Item Value
RNA id XM_034313469.1
length 5491
RNA type mRNA
GC content 0.47
exon number 26
gene id sgip1a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21017926 ~ 21084763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttccctcCATGTGCTGTTTCAGTGCAACATCCACTTATTCATCCGCTAACCTGTCTGAACCGTCCTGTCCTGTGCAGACAGGACTGCTGTAGATACCTGGGGAGCTTGTTACTGACTGGTTCTATATAATTGCAGatgCATTTGTGTATTCCCAGTGAGGGCGCTGAAAGAAGCTGtgagctgtgtgctgtgtgacgTATGACAGTGCCTCAGGGATTGGCTGTGACATCAGCAaacctccctccctctccctctctctccctccctctctctctctctctctctctctcttttcgcTCTCTCTCTAGCACCCTCCCTCTTTAGCTCCCTTCCCCTCTCTGCCTGGTttgcttttttcctcctccctTTGAGCATCCTATGAAAGCCGCAGTgactagcagcagcagcatccaTGGCCTAAACAAGCACAGCCAAGCATTAGGCAGGCGACAGCCGCTGGGAATCTCTTGAGCGTGGCCGTGCCTCTCTTGCTCTCCATCTGCTAACCAGGGGCTTCTCCCCCTCCTCCTGTCGTTGCAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGGATTGAAAAAACGTACCAGGAAAGCCTTTGGGATACggaaaaaagagaaggacaCTGATTCCACagGTTCACCAGACAGAGAAGGAGGACCACAGAAGAAGAGCAATGGAGCTCCTAATGGATTCTACGGCGAGATTGATTGGGACCGATATAACTCTCCCATGGTGGATGACGAAGGTTACAGCATCAGACCAGATGAAGATGGAGCAACCCCTAAAGACAAGTCCCACTTCTTCTCATCCAGTGAGtcggaggaagaggaggaccaCCGCAAAAAATTTAAGATCAAGATCAAACCCCTGCTTGCTGACAATGCTGAGTTTGTGGCTCCTTCGGTAGATGAATTAAAAGCCTCCATAGGCAACATAGCTCTGTCTCCTTCTCCTCTGAGGAGCAGTCCGAGACGTAGCCCGGGTCTGGCAAAAAGAGATTTGACTAGTGAAGAAATCGAAATTGCACGACCAAGACGTTCCGTTCCCACTGTTACTCCAGCCTCAGTCCCCTCACCTGCACCTGCACCTGCACCTGCACCTGCACCAGAACCTCCTagAAGTAAGAAATCTCCAGTGCCAGAGGATGCAGTAGCCTTATTTGGCCCTCCACTGGAGACAGCATTTGAAGAGCAGAGGACAGAAGCGATGATAGAGGAACCTGAGGTTTGGGGTGCTCCTTTACATGAGCCAAACCCAGACTCTTCTCTAGGAAGACCTTTTCCTCCAGGACCACTCCCTCCTCTTCCACCCAAGAATGTGCCGACTTCCCCCCCTCCGAGCAACACTACAAGCCCAGATTCCTCCGTGATTTCTTCAATTATGGTGTCTTCACATGTTACTGATGCAGATGTGAAAGCAGAGGACACTTCAGCGAACACAAACAAACCCTCCATAGCAGATCTGGACAACATTTTCGGCCCAGCAGACTCCCCTAAACCTGCAGACAGTGCCGCAGACAAGTGGGTCTGCTTCAACGATGAGTCACCTCAAAGACCACCACTACCAGAAGAGCCAGCTCCTCCTTTACCAAAATCTCCACCTCCTCCTGAAGAACCtgcccctcctcttcctccacccGAGCCACCAAGAAACACCACACCCTCTCCTCCAGCCCCCATTCTGTCACCCAAAGAACCTTCTCCCCCCAAAGTACCCCTTCCTCCAGATGAGGTAGCCCCGCCTCCTCCAGATGAACCTCTCCAGCCTAATGCTGAATCAACTCAGCCTTTTCCTGATACAGAGGCGAGGTCTGGCTCAGCAAAGACTCCACCTAGTGCTCTGGAGATAAATGCACGTACAATCCCCCCACCCCTGGCCCTTAATCCAGAAGATAAGAACAACCCTGAGGAGGGCAATCCAAAAGAGGACCCAAGTGAAAGCAGTGCTTCACCCAAAGAGATTGATCAGGGCCCTAGATCaacaccaccacctcctcctccccccACATACAGGGCAGTGGTGTCATCTCCTGGGCCTACACCTGCAATCACAAGCGGAGGAAGTGGCAGTGGCTCCTCGTCCCCTGCACGCCCTGCTACGCCACTGGCTGCCAGCAGTCCCCCTCCTCCCCCACCCCCTCCACGGCCACCCTCCCGTCCCAAACTGGCTCCTGGGAAAGGCAGCATAGGGGATGCGAATCGGCCCTTCAGCCCTCCGGTTCACTCGTCGAGCCCTCCGCCTTTGGCACCGCTGGCGCGAGCAGAGAGtacctcctccatctcctccaccAACTCCCTCAGTGCTGCCTCTACGCCCACTGTCGGTAAAGAGCTCTCCGTGTCTGTGTCAGATGACGTTTTTGTAGACAAACTGCCCAGCTTTGAGAGGCGAGCTGACCTCCTAGCAGagacagaccAGCCCTCCCTCGTATGGTTTGACAGAGGCAAGTTTTATTTAACCTTTGAAGGCTGCTCTCGTGGGCCTAGTCCCCTCACCATGGGTGCCCAGGACACCCTGCCCGTGGCCGCAGCATTCACAGAGACGGTCAATGCTTACTTCAAGGGAACAGATCCCAGCAAGTGTGTGGTGAAGATCACGGGTGAAATGGTGTTATCCTTCCCGGCTGGCATCACCAGGCATTTTGCAAATAACCCCACACCTGCAGTGCTAACTTTTAGCATAACCAACTACAGTCATCTGGAGCATGTCCTCCCTAACCCCCAGTTACTGTGCTGCGACACCACCCAGTCCAAACCCAACTCCAAGGAATTCTGGGTGAACATGCCGAACCTCATGACTCACTTAAAGAAAGTGGCTGAGCAGAAACCTCAGGCCACGTACTACAATGTAGACATGCTGAAATATCAGGTATCAGCACAGGGTCTTCAGTCCACTCCTCTAAACCTGGCCATGAGCTGGAGGTGCGAGCCCACCAGCACTGACCTGAGAATAGACTACAGATACAATGGCAATGCCATGACCACACCAGTGGCCCTCAATAACGTGCAGTTCCTCGTTCCTGTTGATGGAGGAGTCGGTCAGCTACAAGCTGTCCTTCCTCCTGCTgtctgGAACGCAGAACAGCAGAGAATCCTGTGGAAGATCCCAGATATCTCACAAAAGTCTGAGAACGGAGGCGTTGGCTCCTTGCTGGCACGGTTCCAACTAACAAACGGCCCCAGTAAACCAGCCCCTCTTGCTGTGCAGTTCACCAGCGAGGGCAGCACACTGTCAGGCTGCGACATCGAGCTGCTCGGCTCCGGATACCGATTCTCCCTCATCAAGAAGAGGTTTGCTGCAGGAAAATACCTGGCAGATAACTAATCTGCACCACAGCCCCATGCAGAAGAGTGTGTCTTTATGGACTAAATGAAATTTACTCAAACCATAGGAGAGATGCTCATTCTGACCTCCGTCGGATCTTTTGGGGATTCCCTTTATAGATGTCTGACCCAGGCGGAGGCCACACTCCAGCAGTATTTTTAGGGTGTACTTCTTGTATTTGTAAAATCGTAAACATTTCAGAACTGTATCGCTGCTGTTAGACAGCATGGGTTTCTCCTAAGACTAGCCTCTCGTCTGTCTAACATCTAATCATTGAACTCATTGGCTGTGGCTGTCTGAATACTTTATATCTCTCTAAACATGCTGTCAGTGTTAAAGCTGTTCAGTAAGATGGTGTGTCTGGAGGAGGATGAGAAGCTCAAGGTCTTTCTGCTGATAGAGAAATGTTCCGTCTAGAACTTTGAAGGCGTTTCCAAACTGACATGATGCTTTCCGATTGCATAGGAAACTGTTCAGGATTGGGTCTGCTGCTTTTTGACATTTGTCTTATTGGCGCTAGAGGGCAGATCATTTTAGATACTTCTAATTTATTACTCATTCAGGGTCTTCAGTGTAATCTTCGAAAGTTGAATCAggcaaaggaaaggaaagatgaTCGACGGGTGCAGCAGATTTAAACCATTAATGTGAAAATCAAGTTTTTGTGCTCCTGTTTGGCACGTAAAGTCTCGTCCTGTTTTAGCTCCTGTTTAGGCAGCCACAGCTGAAACTGTCTTGCTTGcgattgtattttaaaaaaggatttcATTCAGTTGCGAAAAAAGagctgtttaaaaaatgtaatttaaatggaTAATATATATCTTGAAGGGCGTTTGGTGTTTTTCCTCATACTGGTGAATAGCCTTTCTGTTGTTCCTAAGACAGCAGTGTTAGACTTCTGAGTACATcactctatttttatttattcctgaTCATTTgttgtacaaaaaaaagaaacaaaaattcagtaactgtatatgtataaactTTGAATGGTATCACAGTTTAGGATCCTTAAAgttataaatatttgatttttttgttatctGTGTAGTTGGGTAACCTGTGTACAGTATAATGCGGAAgtataatttttacatttatttcagatataattttttaaactcaaGTGCAACAGAGAATCGAGCTGTATGTATATGGGTGGGGGGTAAAAGTGGCTGAATACTGTATCTGTGTGGGTGAATCATGCTTTATGAAAGCAGTGTTATGTATATCTGCACTATTAGTTGAAACATGAATTGGTTTTGGACAGTTTAAACACTTTTACCGTTCACACCATTGTGCTGTATTCAACTGTTCTCATCTTCCTGTGCATTTTATTTGATGTCTCAAGCATGAACCCTTGTCAAACAACCCAGCGCTTGAGTTCATGGATTTATTTTGTGAATCATAATGTCTCTGTGAGATGACAAGGATGAGGTTTGGCGAGTGGTTAGGATGACCAAAAcgcttcttccttcttctttttttttgtatttgtgtgtatctCCAAAATTGTCCCCAAGAGAGAATaagctgcatatttttaaatgttataaactattaataaagtcataaaatattGTTTCTTGTGGAAAGAATACCACTGTGCTACTTTTGAACTTCCCACATGCTCTGATAGCTGATATGAAGAACAAAAGCATCCTCCTGTCACATGAAGTGGCTGCTGTAGAGAAAACACTGGTGCTTTGAGAAAGTTTATTcccatttgagttttttttcccattcatATCTGCTGTATGTTGTGGAGGATCAATGCACTGGCctttaacattaacacaacaTTCTGCGTtgaatttaacacattttgagaGTCCTGAGTGCAGTTCTATAGCAGTGGATGACTTTTTCTCCATAATCCAAACTGAAGTGTTATCCAGGCTGTGCTTGAGAGGCAAGAAGCTGTGTTGTATGTCAGTCAGGTACTGtaattgaagtgtgtgtggtgtgtgagtgtgtatgtgagtgttcCTGAGGTTGTGAGCATGTGTGACTGTCTGTTGTTTGAACATTCTAGAGTTTTCTTGCCAGCAACATGTGCAAGATGTGTTTGTACAGACGGTGTTAACAATGAACCCGAGATTCTTTGCTCTTTCCAAACCAATAAAAGATGTAAGCAGAGTGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36669 lncRNA downstream 57535 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 360543 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 361406 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 469289 20512732 ~ 20548637 (-) False G30879
TU36444 lncRNA downstream 483805 20512732 ~ 20534121 (-) True G30879
TU36880 lncRNA upstream 196601 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 299646 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 304714 21389477 ~ 21412173 (-) True G31454
TU37132 lncRNA upstream 447485 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 485093 21569856 ~ 21612822 (-) True G31486
XM_026918070.2 mRNA downstream 18537 20996088 ~ 20999389 (-) True pars2
XM_026918061.2 mRNA downstream 18538 20996088 ~ 20999388 (-) False pars2
XM_026918081.2 mRNA downstream 23485 20989685 ~ 20994441 (-) True ttc4
XM_026928304.2 mRNA downstream 39289 20963389 ~ 20978637 (-) True lurap1
XM_026935299.2 mRNA downstream 131093 20884525 ~ 20886833 (-) True zgc:153311
XM_026923618.2 mRNA upstream 27442 21112205 ~ 21262115 (-) False pde4ba
XM_026923625.2 mRNA upstream 27442 21112205 ~ 21215561 (-) True pde4ba
XM_026923634.2 mRNA upstream 27442 21112205 ~ 21170061 (-) False pde4ba
XM_026923641.2 mRNA upstream 27442 21112205 ~ 21120491 (-) False pde4ba
XM_034310139.1 mRNA upstream 198262 21283025 ~ 21317823 (-) True lepr
trnap-cgg_1 other downstream 1631413 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1637414 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2200728 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2201596 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2211176 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 379098 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 379098 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 379098 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 379098 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 379098 21463861 ~ 21531428 (-) False raver2

Expression Profile