RNA id: XM_026918061.2


Basic Information

Item Value
RNA id XM_026918061.2
length 1945
RNA type mRNA
GC content 0.49
exon number 3
gene id pars2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20996088 ~ 20999389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGGCGAAGAAGAAAGCGGTTTTATTTCAAAACGGCTGCATAGCAGACATAAAGTGCATTACATAGGAAGTAGAAGCCACTATttcataccctatgtagtgtacTTGTAAAGGCAGTAGTGAGAGGATTTGAACACAGCCTGTGTTTAGATGGTGCCGTCCATGCTGTCACGTCTTTGGAGTCTATTCAAACCTCTGCAGATTTTTTCTAAACAGAAGCGTTTGCCATGGAGGCATTGACGCACTTCTGTCGCCGCACAGCATGTGCCCTGCTGCCCAGATCACTGAGCAAAGCATCCAGAAGGAGTCATCACTGCCATCCACAAACGTCACAGTGCACAGCTCGTGTTTCCTCCAAACCAGTGACTCCAACACCTCTGGTATCACGGCTCTTCCAGCCTTCAAACCTCCGTGAAGGCCAGGACATGGGGGACATGACGTGCCGCAGCCAGAGACTGATGCTGCAGGCTGGTCTCATTCACAGCTCCAACCCAGGCTGCTTCTACTACCTTCCTGCTGCCCTGCGCTCCATGGAGAAGCTAGTGAGGCTCATTGATGAGGAAATGCAGGCCATTGGTGGGCAGAAAGTGGACATGCCAGCTCTGTGTGGAGCGGAGCTCTGGAAGCAGAGTGGGCGCTGGGAGCTCATGGGGAAGGAGATGTTCAGGCTGCGGGATCGACACAATGCGGAGTACTGTCTCGGCCCAACACACGAGGAGGCAGTCACAGAACTGCTGGCATCTCAGAGCACGTTGTCTTATAAACAGCTGCCACTGCTGCTTTACCAGGTCACCCGGAAATTTCGTGACGAGCAGAAGCCGAAGTTTGGATTGCTCCGAGGCCGAGAGTTCTACATGAAAGACATGTACTCATTTGACATCAGTGAGGAAGCTGCTCTCCACACCTACCACTCTGTGTGCCACGCCTACTCTCGTCTGTTTGACCGTCTTGGGCTGAGCTGGGTACAGGTGCAGGCTGCTACTGGCAATATTGGGGGAACGCTCTCACATGAGTTTCATCTGCCGGCTGATATAGGGGAAGACCGTCTGCTTATGTGTGGGAATTGTGGCTTCTCTGCTAACGTTGAAACCATGGAACCGGGTCAAACTGACTGCCCTCAGTGCCACACGACTCAGCTCACTGAGTCAAAAGGCATTGAACTGGGACATACCTTCTATCTTGGAACGAAATATTCCAAAGTGTTCAATGCCACGTTTGTTAATGCTCAGAACAAGCCTTCAGTGACAGAGATGGGCTGTTTTGGCCTCGGCGTTAATCGCATCCTTGCTGCATCTATTGAGGTGCTCTCCTCTGAGGAGTCCATTCGATGGCCTGGGCTACTCGCGCCGTATCAAGTTTGCATCCTTCCCCCTAAAAAGGGCAGCAAAGCCGGTGAAGCCATCCACTTGGCAGAAGAACTCGCCCAAAGTTTAGGAAACAGTTTACCAAATCTAAAAGGAGAGGTGGTTCTGGATGACAGAACCCAGTTGACCATTGGGAAGCGGCTAAAAGACGCTAACATGCTGGGTTACCCGTATGTGGTGGTGGTTGGGCATAAGGCCATGGAGGAGCAGCCTGTCTTTGAGGTGGTATGTCAGCATAGTGGGGAGACCATGTTCCTCAGTAAAGACGCCTTGCTGCACTTTTTGACTGGAGTCGAGACAATCTAACACATGGATTCTAAACTTGAATCCTGTACAGTTTCCAGCTTTCCATGCTTCAAGCATGAGCTGGATTAGGTGTGTTGGGAAAATCTAAAAGAAAATCTGTGAGCTAATATATCTGAGCCACTTTGGGGTGCATAACTTCATATGATCTGTAACATGAGGGAGCATTTAATACAGAAAGGTTTTTGGTATTGATATCATGGCAGTATGTATCAAATATGATGCTTCCCACTTGTACTGATAATGACCTTCTTTTAATAAAGCTGATCTGTTTATA

Function

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36669 lncRNA downstream 35697 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 338705 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 339568 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 447451 20512732 ~ 20548637 (-) False G30879
TU36444 lncRNA downstream 461967 20512732 ~ 20534121 (-) True G30879
TU36702 lncRNA upstream 63506 21062894 ~ 21065738 (-) True G31094
TU36880 lncRNA upstream 281976 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 385021 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 390089 21389477 ~ 21412173 (-) True G31454
TU37132 lncRNA upstream 532860 21532248 ~ 21532459 (-) True G31481
XM_026918081.2 mRNA downstream 1647 20989685 ~ 20994441 (-) True ttc4
XM_026928304.2 mRNA downstream 17451 20963389 ~ 20978637 (-) True lurap1
XM_026935299.2 mRNA downstream 109255 20884525 ~ 20886833 (-) True zgc:153311
XM_026921521.2 mRNA downstream 225677 20683547 ~ 20770411 (-) False lrrc7
XM_034313472.1 mRNA upstream 18538 21017926 ~ 21084763 (-) False sgip1a
XM_034313464.1 mRNA upstream 18538 21017926 ~ 21084763 (-) False sgip1a
XM_034313469.1 mRNA upstream 18538 21017926 ~ 21084763 (-) False sgip1a
XM_026918042.2 mRNA upstream 18538 21017926 ~ 21080484 (-) False sgip1a
XM_034313460.1 mRNA upstream 18538 21017926 ~ 21080483 (-) True sgip1a
trnap-cgg_1 other downstream 1609575 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1615576 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2178890 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2179758 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2189338 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 464473 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 464473 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 464473 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 464473 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 464473 21463861 ~ 21531428 (-) False raver2

Expression Profile