RNA id: XM_026918266.2


Basic Information

Item Value
RNA id XM_026918266.2
length 4048
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC113529215
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 7066318 ~ 7193141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACACTCTGTCAGAAAGACCACGGCGACTATTCGGACATCAGATTTCTCCTTTGCAGCTTGGCGCAGTCCGATCGCAGGAACGGACCATCGTTTAAAAGATAACAGAAGCTGATGTGCACACTAGAACATCGCTCAAGTATTTTGGACGGGCAATAAAACTGAAAGTGTGGCTTTggatgatgaagatgacgaTTTTACTATCACGCGTGGCGCTAACCCTGCTGTCACTCAAATGCTACCTTGCAGAGAGAAATATTCAACATGGACCTGTTTTCACCCAAGAGCCTAGTGACAGTGTTTTCCCGCTGAGCAGTGAAGACAACAAGATATTCATCAACTGCAAAGCCAAAGGAAATCCGCCGCCGCATTACAGGTGGAAATTCAATGGAAGAGATCTCAACGTTTACAGTGATTTGAACTACAGCCTGGTAGAGGGCAACCTCTTGATCAATAACCCGCAGGCGATGAAAGACGGAGGATCTTACCAGTGTATTGCCACTAATGCCTTTGGAACCATCCTAAGCCGCAAGGCCAAAGTGGACTTTGCCTATCTTCAGAATTTCACCAACAAGGCCAGAAATGCAGTCTTGGTGAGAGAAGGCCAGGCTGTGGTGCTGCTGTGTGGCCCACCACCCCATTTTGGAGAGATTAGATATGCATGGATCTACAATGGCCATCCCAGTGTCCTCATCCAAGACAATCGGCGCTTTGTGTCCCAGAGGACAGGGAACCTGTACATTGCTAAAGTGGAGCCGTCTGATGTGGGCAACTATACATGTGTGGTAAAGAACATGATGACCAATGGCACCGTGTACAGCTCACCCACTCCTTTGGTGCTGCGCCGGGATGCTGTGATGGGTGAATACGAGCCTAAAATTGAAGTCCAGTTTGAAGAACTGCTGCGTGTCATCAAAGGATCATCGGTTAGACTGGAGTGCTTCGCTTTAGGAAATCCAGTGCCTTCTATCTCTTGGAGAAGAGCAGACGGAAGCCCTTTTCCTGGAAAGatgaaaatcaatcaatcaaatggCGTCCTGGAGATCCCTTATTTCCGGCCTGAGGATGCTGGCTTTTATGAATGTGTGGCAGAGAACTCCAGAGGCCGTAGTGTTGCAAAAGGACACCTCATATTTAATGatgtggaacatctgcattGGGCCCAGACACTGCGTGATGCCTACATGGCCATCGGTGCTGATCTGCACTGGGAGTGCAGGGCTAACGGGAAACCCCAGCCAGTGTACAGATGGCTTAAGAATGGACAGGCCATCGTGTCCGAGGACAGAATCCGCATTAATGGAGGCAAGTTAATGCTCTCTAAAGTTAACCTAGAGGATTCTGGGATGTATCAGTGTTTGGCAGAGAATGAGCATGGTGTCGTTTATGCCAGCGCTGAACTCAAAGTTGTAGCTTCTCCTCCAGACTTTTCTAAAGGTCCAGTGAAGAAGTCCACATTGGTTCAAAGAGGAGGTGAAATCGTCATTGAGTGCCGGCCACATGCATCTCCCAAGGCCTCCATCACATGGAGGAAAGAAGGCGAGGTGCTGAAGAACAGTGAGAGAAGGACAATCTCGGAGGACGGCACCCTGAGGATTACCAATGTGAGTGAGTCAGACGCAGGTAGATACACGTGCATGGCGCACAACCTGTTTGGCGTGGCCAGCAGCACGGGAACACTGGTGGTCAAAGaaccaACCAAAATTACAGTTCCTCCACTGAGCATGGATGCCACAGTGGGTGAGAGCATTGTTCTGCCATGCAGGGTGTCCAGAGACTCCAACATGGACTTCATCTTCAAGTGGTTCTTCAATGGGAAACTTGTCGATTTCAGCCGCCACGAACACTTTGAGATGATTGGAGGGGGAGCATCTGGTGACCTCATGGTACGTAACGTTCAGCTAAAACACTCTGGGAAATATGTCTGCATGATCCATACAGCGATGGACAGTGTCTCAGCTGCAGCTGATTTGATTGTCAGAGGGCCCCCTGGTTGCCCTGACCAAGTTTTGGTGGGGGAAGTCACTGACCGGACAGTTCAGCTCTCATGGAGTCCCAGTCCTGACAATCACAGCCCCATCACACATTACATAGTGCAGTCCCGAAGTGATTTCTCTATTGGTTGGCAGGCTGTAAAAACAGTTCCTGATTCTGTGCCTGGACAGATGACACATGCCATTGCAGTGGGTCTGAGCCCGTGGGTTCAGTATGAGTTTAGGGTGGCAGCCATGAACAGTGTTGGCATGGGTGAGCCCAGTGCCCCATCTGAGGCTGTTCTCACTAAGGCAGCAGtTCCTGAGGTTGCTCCAGCCAATGTGAGTGGAGGTGGTGGGAGCCGTGGCGAACTGGTGATTGTGTGGGAGCCTGTTCCAGAAGAACTACAGAACGGAGATGAATTTGGATATGTGGTAGCCTTTCGTTTACTTGGTTCTCTGGTCTGGATGCAAAGCGTGGTGCCCTCGGTGGATGCATCCCgatatgtgtttaaaaatgacagCTTTCCTCCACTCTCACGGTTCGAGGTGAAGGTGGGAGTTTACAACAGCATTGGAGAAGGACCCTATAGCCCTGTATCGGTTATCTACTCAGCGGAGGAAGAGCCCTCTATAGCCCCTACCAAAGTGTGGGCACATAGTCTTTCCTCCTCAGAACTGCAGGTTTTCTGGGATCCCATTCTGCCAAGCCATAGCAAATCCACAATCTCAGGGTACGAGGTGCTGTTGTGGGAGGAGGGCTCATTAGAGAGCAAGGCAATGAAGGAAAGGGTCATAAGAAGCCCAGCTCATATCACAGGCCTGAAGGGTGGCACTCTGTATCTAATCTCAGTCAGAGCTCACAACAGTGGTGGAGTTGGACCTGCCAGTGCTGCCATCAACATGACTACAAAGAAGCCACctcCAAGTCAGCCTCCAGGGAAGATTGAATGGAACTTGACAAACTCCAAGATTTTTTTGCAATGGCAGCAAGTAAAGGCAATGGACAATGAATCTGAAGTAACAGGCTACAAGGTGATGTACCATCAAAACTGGCACAAAGGCACCAGCATAGTGGAAACAAATCAGACATCATTGGAGCTACAGGTTCCAGCAGGAGAAGATCTGCTTATACAGATCAAAGCCTTGAGCGATGGAGGAGACGGCAGCTACAGCAGTCCAATTCATATACCAAAGATGTCCAaTCTGAACTCAAGGGGCTACTTCAGCTCTGATGCAAACAAGATGGTCCATGTCCATGAAGTAGCATTTCTTATGCTATCATGGCTGCTTCTGTAGAATTTTTCCCCTTGATTAGCACAAGCTGAAAAGAAAATCAAGCGTTGAATACTGTTTAAGATGAAAATACACTATGTGgaagtaatttatttatgtcaTAAGCCCAACAATgttgagagagacacacagcccaatatttgtttttaattattgaaGAACTTATGCTTTATCTGTTTAGTTTTATGCAAAAGGGTGAACTGTTGGAGTGTGATTAGGTTTTATTTGTCAGTTTCAACACTTGAGAAAACTTAAAACTCACTTCTACTTTGAAATGTAGTATATTTTGACCTGAAAACAGCATTCAAGAGAAGCAGTCTCCTGGCTCTTCATTAGACTCCTGCTGTTTGACTTATACACTACCTTCTCCTGTTAGTGCAGAAGTCTATCTAAAAGAGCATGAATGTGTTTTTCGCACTGTTTGAGTTTTGCACCCATGAGTTTGTTAAACTGTTATAGAATGCCTGATAAATGGTTGACATCTGTAATAATTAATCAGACATTTTGCCTTCATTATGCAATAGAAGATTgaagtttagtgtgtgtatgtggggggGAAGCAATTTGTCAAGCCAAgttctgttttatatatatatattttgctgttttgtgaGAGTCACACTGATAATGATCTAAGAAACATACCCtcattttaatgcattcattttccCTCAGATTATTTGGTATGGAGTATGTCTGCTTCAAATCTCAATAGAATTGTTTTCATCATTATTCTTTAGATGAAACCAGTGAGGCCTTCTTTGAAGgtacaatatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27226 lncRNA downstream 265499 6799518 ~ 6800819 (-) True G22896
TU27070 lncRNA downstream 300626 6718275 ~ 6765692 (-) True G22743
TU27026 lncRNA downstream 382588 6683454 ~ 6683730 (-) True G22699
TU27022 lncRNA downstream 390631 6675480 ~ 6675687 (-) True G22695
TU26972 lncRNA downstream 443876 6621935 ~ 6622442 (-) True G22650
TU27695 lncRNA upstream 479559 7672700 ~ 7675334 (-) True G23337
TU27688 lncRNA upstream 511986 7705127 ~ 7710210 (-) True G23330
TU27777 lncRNA upstream 690387 7883528 ~ 7883813 (-) True G23417
TU27786 lncRNA upstream 713184 7906325 ~ 7907008 (-) True G23426
TU27787 lncRNA upstream 720555 7913696 ~ 7914794 (-) True G23427
XM_026918278.2 mRNA downstream 107158 6800925 ~ 6959160 (-) True cntn4
XM_034309682.1 mRNA downstream 278726 6782273 ~ 6787592 (-) True rhebl1
XM_026922899.2 mRNA downstream 295470 6744383 ~ 6770848 (-) True LOC113531909
XM_026921156.2 mRNA downstream 464209 6578612 ~ 6602109 (-) False rbpjl
XM_026914958.2 mRNA upstream 88866 7282007 ~ 7370519 (-) False chl1b
XM_026914939.2 mRNA upstream 88866 7282007 ~ 7370519 (-) True chl1b
XM_026914966.2 mRNA upstream 88866 7282007 ~ 7370518 (-) False chl1b
XM_026914975.2 mRNA upstream 88866 7282007 ~ 7370517 (-) False chl1b
XM_026914949.2 mRNA upstream 88866 7282007 ~ 7339657 (-) False chl1b
TU26888 other downstream 586307 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 989441 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 1530258 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 1530311 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 1865106 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 1069478 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1287910 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1287910 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1287910 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2242422 9435563 ~ 9441810 (-) False tusc2a

Expression Profile