RNA id: XM_026918449.2


Basic Information

Item Value
RNA id XM_026918449.2
length 3633
RNA type mRNA
GC content 0.45
exon number 16
gene id txnrd3
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14158384 ~ 14172056 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCACGACTCGTGCTTTCGCGGGTTCATAAATACCGGCGAGCTCGAGGCGAGCAGAGCCAGACAGATGACCCGTGAAGAGATATGCGGGAAATAAAGCGTATACGTCTGTCGTTTGTTCGTTTTGGTTTTCCTTAGTTgtcttttgttgatttgaacTTGTTTTAGCACAGTGTCAGGACGCAGTGTTGCTCCAGTCTGAGTGGGAAGAGTTCGGTAAGAACTTCGCTATTCATCTTCCCGGCTAGTAATTTAGCTCCCTCTGATCCGCAGTAACGCGCGCGGCATTTTCCGGTCTAATCATGCCGCCGGTAGAGACCGAGAACGATCCAATTAAAGCTCGGATACAGGAGCTCATCGACACCAATCCTGTTGTGATTTTCAGCAAAAGCTACTGTCCCTACTGTAAAAAGGTGAAGGAGCTCTTTAAAGAGTTGAATGTGACATGCGAAGCCATAGAACTGGATCTGATTGAGAATGGATCCATCTACCAGGATGTGCTGATGGTGATGACTGGACAGAAAACCGTCCCCAATGTCTTTGTCAACAAGACACATATAGGAGGCTGCGACAAGACCATGCAGGCATATAAAGATGGCCACCTACAGCAGCTGCTGGGAGCGGAGAGCACGGCATACGACTATGACCTTATTGTGATAGGAGGTGGCTCTGGAGGTCTGGCCTGCTCAAAGGAAGCAGCTGCTTTAGGGAAGAGGGTCATGGTTCTAGATTATGTTGTACCCACACCTTTGGGCACATCTTGGGGTCTGGGTGGTACATGTGTGAACGTGGGATGTATTCCTAAGAAGCTGATGCATCAGACCGCCCTGCTGCGCACTGCTTTGGAGGATGCCCGCAAATTTGGCTGGGAGTTCAGTGAGGCAGTAAGTCATAACTGGGAAACGATGAAGACTGCCGTGAATAACTACATCGGCTCTTTGAACTGGGGCTACAGAGTGTCTTTACGTGACAAGAATGTCGAATATATGAATGCGTATGCAGAGTTTGTGGAGCCACACAAAATCAAGGCCACAAACAAGCGAGGCAAAGAGACATTCTACACTGCAGCTAAGTTTGTGCTGGCAACGGGAGAGCGGCCACGCTACCTGGGCATCCCTGGAGACAAAGAATACTGCATCACCAGTGATGATCTGTTCTACTTGTCCTACTGTCCTGGTAAGACACTAGTGATCGGAGCATCGTACGTGGCTCTGGAGTGCGGAGGGTTCCTGGCAGGGCTGGGGCTTGATGTCACCATAATGGTACGCTCCATTCTGCTGAGAGGCTTTGACCAGGACATGGCCAACCGTGCAGGGGAACACATGGAGACACATGGGGTCAAATTCCTCAGGAAGTTTGTCCCTGTTAaggtggagcAGCTTGAGGCTGGCTCTCCAGGCAGATTGAAAGTGACTGCTAAGTCTACAGAGACTGATGAGATCATCGAAGGAGAGTACAACACTGTACTGATAGCTGTGGGTCGTGATGCTTGTACAGGAGCTATAGGTCTAGACAAGGTTGGGGTGAAGGTCAACCCAAAGAATGGGAAGATCCCAGTAAATGATGGAGAGCAGACCAACATTCCACACATCTACGCTATCGGGGACATCCTGGAGGGCAAGTGGGAGCTGACTCCTGTGGCCATTCAGGCTGGAAAACTCCTGGCTCGCAGGCTATTTGCAGGTTCCACTGTGAAGTGTGACTATGTGAATGTTCCTACCACGGTGTTCACACCTCTGGAGTATGGCAGTTGTGGTCTTTCTGAGGAAAAGGCTATAGAGCTTCATGAAGAGGAAAACCTGGAGATTTTTCATAGTCTGTTTTGGCCTCTGGAGTACACCATACCCAGCAGGGACAACAACAGGTGCTATGCCAAGATCATCTGCAACAAGTTGGACAATGATCGTGTTATTGGTTTTCACTACCTGGGCCCTAATGCTGGAGAGGTGACTCAGGGCTTTGGTGCTGCCATGAAGTGTGGAGTTACAAAGGAGCAGTTAGACAGCACCATTGGGATACACCCTACCTGTGCTGAGATCTTCACCACAATGGAAGTGACCAAGAGGTCAGGTGGTGACATCAAACAGGCTGGTTGCTGAGGTTAAACCCTGCTCGTTTAATAGGCTGTCCTAAAACCGTATGAACTGGTTCACACTAGTTTATACTGGCCTCATCCATCCTTTAAGCAATTTCTTGGCTTTTCTTCTCTGCATTCAAAATAAGCTTTTCCACTAGATTCCTAGCTTTTGAGCTCCACTCAAGGCTAAACCAAGTCTACCACACAGCAATAAAAGATGGAATTGGATGAAAGCGCAAGCTAGCTTAGAGTGCGCTCAAGAGTTTAATTGTAGTGAAGACACATTGGTTAGCTGTGGCCTTGGAGGATCTAGGATAGATGTTCTTTAAATTTAACTGCTGGATACCACTTGAAGCTTCTACGGTTCCTCCATAGGAGTGAGTGTTTTTAGTGGTTGCATTTAAGGAAGTCCTCAGACCGTGGTCCTCCAGGACTGAGCTTAACCTGCTGCAGAGGAGAGAAGCTGGAGAAGTTAAAATCCTGTAGGACAGCCTGTTAAACAGCGGGGTTACTCTGCTGCTCCAAATCCTCCAAGCCTAAGACAGAATTGCACTGGGGGAGGACACATGCCTTTGTGATCACTTTCCCAAGTGCTTTGTGACGTTTTAGCCCTTAACCTGAATTCTGAGGTGGGCTAAGACTGATAATGGTCTGTGCTTAGACGTAAGAGGTAAACACACTTTCCtgtacaaacatacacaaaaattCTAGTCCAGTAACCTCAGCTCCAGGCTCACAAGTAGGACTTGGGGCTATCAGTTGCCCAGAAATACTGCAGTGCTGCACAATCATGACTGTTAGAACTGGGTCTTTGAGCACATGTGATGAATACATGTAAAAGCCAGATAGAGTTACTAATGATTTAATCCACCGTAGCCTAGGACATTAATACCCATTAATGCTAAACATGTTTGTTAAACATGTCAACATTTTTGGGAACTCAGGCCagataattattttgtttacttttaaagTTAGTGGTATGTGTGCTCTACAttgtttctcttgtttttttgtttgtttgtttgttttttggtcatTATTTGATCCCTTATCCTTACCAACATTCCATCCATGGATCATTTAACAATTAGTTGGTTTGTTCTTTTCCATTTGTGTCAGTCCATTGTCTAGTTGGAAGCTTTTTACTAAACAGCCAGTCATGAGAGAATAAATTGTGGTCTTACTAAATCTCAAAACAAAACTGGCATATAGTTTGGCAAAATATCAGATGTccattaaacataattaaatggAAAGATTTGTGAACATTAAATTGGTTTTGAACGAAATGCACTTAAATTActgaatttaataaattttactatttaaaagtTGTTCAGATCATAatcaaatgccttttttttatcagtttgaaCTCACTGTTCTTGAAATATATATAGACCCCCTGGTTGGTGTGgactttattaaatataaaaccctGCTGATGTGTTGTTACTTAGCAACAGTGCCTGGTAAATGTACAAACCAGTGTTTCCATGGTATCACTGTTTTCAGTGTAATTGAAAGAACTTTAATAAAGCTATGTACACTGAA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32060 lncRNA downstream 285 14156938 ~ 14158099 (-) True G27168
XR_004580178.1 lncRNA downstream 58695 14063956 ~ 14099689 (-) True LOC117599875
TU31990 lncRNA downstream 129500 14027302 ~ 14028884 (-) True G27105
TU31924 lncRNA downstream 321902 13835830 ~ 13836482 (-) True G27043
TU31923 lncRNA downstream 322035 13835830 ~ 13836349 (-) False G27043
TU32061 lncRNA upstream 616 14172672 ~ 14172921 (-) True G27169
XR_004577242.1 lncRNA upstream 66739 14238795 ~ 14251264 (-) True LOC117596067
TU32152 lncRNA upstream 182785 14354841 ~ 14401429 (-) True G27254
TU32157 lncRNA upstream 272570 14444626 ~ 14454291 (-) True G27259
TU32201 lncRNA upstream 320581 14492637 ~ 14492839 (-) True G27303
XM_034309688.1 mRNA downstream 10535 14129841 ~ 14147849 (-) False LOC113531636
XM_026922484.2 mRNA downstream 10537 14129841 ~ 14147847 (-) True LOC113531636
XM_034314008.1 mRNA downstream 114059 14030764 ~ 14044325 (-) True cfap100
XM_034311817.1 mRNA downstream 251195 13864944 ~ 13907189 (-) False lhfpl4a
XM_026909744.2 mRNA upstream 105993 14278049 ~ 14457232 (-) False plxna1b
XM_034311693.1 mRNA upstream 105993 14278049 ~ 14456646 (-) True plxna1b
XM_034311697.1 mRNA upstream 105993 14278049 ~ 14443085 (-) False plxna1b
XM_026922331.2 mRNA upstream 324164 14496220 ~ 14541322 (-) False chchd6b
XM_026922322.2 mRNA upstream 324164 14496220 ~ 14541322 (-) True chchd6b
TU31994 other downstream 99939 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 251195 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 523732 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 658400 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 919578 13238704 ~ 13238806 (-) True LOC113537313
trnae-cuc_5 other upstream 220224 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 700892 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 700893 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 1125253 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 1284579 15456635 ~ 15461001 (-) True G27925

Expression Profile