RNA id: XM_026919264.2


Basic Information

Item Value
RNA id XM_026919264.2
length 2480
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC113529797
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14591405 ~ 14598546 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACTGACACAGCGCTGGCGGAGAACGGCATTGCAGGTAAATCGGGACGCGTTTGTCAAcaccatttttttctgctttcattAACATGTGCGAGAAATGAAGCGGACTCGATAAGAGACAGTAACGTTGCACTGGTCCGAGTTTTTGTTTGGGGAGAAAAAGACGAACGCGGGCTGTGAAAACACCTCGCCTTGGGCAGAAGAAGCTCCCGTTGTGTGCCCGCTTTGTGGGAAGCACGCTTTTCTTCTCCGAGCAACTTCGAAAGCTGTGGATTTTTTGAAATCCTGACCCCCTATCTAACAAAGGATGAAATCTGTCAAAAGAGTGTTTGAAGAGGAGCACAGTGGAGAGACAGAGTTTTCTGCCATGTCAGACAGTGATCCCTGTGAGGATGATGCTTACCCACTCAATCTTTCCACCGGTGCCCGTGGAGCTTCTGCTAAGCGTCGCCGCCGGGGGAACCTGCCTAAAGAGTCTGTTCAGATTCTGAGGAGCTGGCTATATGAGCATCGTTTTAACGCTTATCCCTCTGAGCAGGAGAAGCTCAGTCTGTCAGGACAGActaatctctccatctctcagATCTGTAACTGGTTCATCAATGCACGGCGACGGCTGCTCCCTGACCTGCTCAGGAAGGACGGAAAGGACCCAACTCAGTTCACAATCTCCCGTCGCGCCAGCAAATCAGACAGCCGGTCAGTTGGCTCCGCCTCACCAGACCACTCCACCCCTCCACTGGTCCCGGCATCTCGCCCCTCTGTCATCCGCCCTGCCCCTGCATTGGACCTGAGCATGCTGGGTAATACAGCAACTGCCATCTTGACTGGGGCTGGCTGTTTAGTGGGATCAGGTTTAACAGGCCGAGACGGTAGTGTCCAGACCCTCGTGCAGGTGGACACTCGCGGCCTGatcaagaaagaaagtgtgaatGGACCTCCTAGTGTAACTACTATTCCAGGCTCTTCTTCCAGCAGCCCAAGCCTGGGAACGATGAGTCCTACAGTGGTGCTGTTCAACACGCCGCCCCCTACACCCCCAGAGCTCTGCCCACATGACTTCAGCGACCTCAAGCTGCTCGTAGATGCAGCCTTACAGAGAGCAGCAGAGCAGGAAAACCAGAGACAGAAGGAGCAGCCTTCAACTAGAGTGCCCTGTTCTGTTCCTGTGTCTGTTTCAGGAACAGAAGCTCCAAGTAGGAACACAGAGCAGGAAAAGAGCTGTGAAAGCCTGAGCTCCAGCAGCAAATCTGACTCTGCTCCAAGCCTGCAGGAGAAGGCCATCCTTCCTGTCTCTGTGCCTGTGTTAAATGCCTCTGCTTCCGCTCTTCCTGCCAGTGAAGCGGGCGTTAGCCTGCCAGTGGTTCCACATAGAGTTGCCGGAGCAGTGAATTTTCAGCCAAATGGTGTGTGGAGTGTGGTCAGACCAGCTAGTCCACCCCCAACCAGcgtcacacacacctggagctcACAGCACACACTCCACGCTGTCAGAGAAGCAGTCAACTGAGAAAATCAAAATGACAGGTGTATGCATTTATGAAGGACAAGAAGCAACAACTGAGAAAAGGACATTCCACACAACCAAGACGTGAATGCAACACTCCTCTGCTCTGGGTTCTTGTTTGGCTGAGGTTGTCCATGACTCTTATTTACATGGCAGAAGACAGATAGTCATGTGGCTGCAATGTCAGTGTCGCCTTGACAATCTCCAGTTGTCATGGATGTGATCTGAGGGTTGCCGGACGACCAGCTAGAAACGGAACATTTCACCTGATGGTTCAGATAACCCGGTTGTAGGACATACACTAAGTTTACCTTTTATTGACACAAAGAATATGTTTTTAAAGCAGCAAGCcttttaaaacctttaaaagaCTTTTCTATTGTTTTCACTACATGAGATTTATTTACGGTCCTCTTTACCATTTCAGCACAACAGCAATTGAGAACATATGATAAGGCTCAGCTTAAAAGGGAAGTAAATCTTGTGGGTTTAAAATCCTGAACGGGGCATTTTTAGATTCGCCACAGACAGTGAACTTTCCACACAAACCCTGGCAGAGTTGTGATGTTTCTCAGTGTTATGTATCTAACTGATAGGTGAGACATTTATGGTTTATTTGCTTTTAGGACTGCCGTTAGAAGTTACACAAGTGGCCTTGCTCAGTTTTTTGCCTTAGATATTGGTTAAAGTAGGGGTAGGCGATATGGCAAAAacatcatatcacaatacttgaTGTTTACACGACTTAAATGATTTGGTTTAGCTGAAGTTCAATTGGAAACACAGTACACTAGTGAAACAGCACACCCACATTTAATCTCAGAAGagtgtattgtgatatgatgTAATATAAGATCTGCCAGATTTTGATATTGTTTTTGCCTGTATGCTCCAATGTCCTGGCTTAGGGCTAGATAAGTAGACTATAATGTAGCATGGCtaactatttttatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32201 lncRNA downstream 98566 14492637 ~ 14492839 (-) True G27303
TU32157 lncRNA downstream 137114 14444626 ~ 14454291 (-) True G27259
TU32152 lncRNA downstream 189976 14354841 ~ 14401429 (-) True G27254
XR_004577242.1 lncRNA downstream 340141 14238795 ~ 14251264 (-) True LOC117596067
TU32061 lncRNA downstream 418484 14172672 ~ 14172921 (-) True G27169
TU32377 lncRNA upstream 191971 14790431 ~ 14790641 (-) True G27448
TU32421 lncRNA upstream 261545 14860005 ~ 14860246 (-) True G27484
TU32441 lncRNA upstream 285795 14884255 ~ 14884487 (-) True G27502
TU32551 lncRNA upstream 411865 15010325 ~ 15010661 (-) True G27600
TU32615 lncRNA upstream 466425 15064885 ~ 15065211 (-) True G27652
XM_026922080.2 mRNA downstream 10105 14562176 ~ 14581300 (-) True zgc:123305
XM_026912700.2 mRNA downstream 30729 14557562 ~ 14560676 (-) True trim107
XM_026928987.2 mRNA downstream 36932 14545189 ~ 14554473 (-) True tpra1
XM_026922322.2 mRNA downstream 50083 14496220 ~ 14541322 (-) True chchd6b
XM_026919235.2 mRNA upstream 2203 14600663 ~ 14702035 (-) False dlgap4b
XM_026919227.2 mRNA upstream 2203 14600663 ~ 14702035 (-) True dlgap4b
XM_026919252.2 mRNA upstream 2203 14600663 ~ 14702034 (-) False dlgap4b
XM_026919244.2 mRNA upstream 2203 14600663 ~ 14702034 (-) False dlgap4b
XM_026913137.2 mRNA upstream 199177 14797637 ~ 14814447 (-) True vstm2l
trnae-cuc_5 other downstream 199054 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 532960 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 684216 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 956753 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 1091421 13498605 ~ 13499984 (-) False slc5a8l
XR_003403256.2 other upstream 274488 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 274489 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 698849 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 858175 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 863490 15461950 ~ 15469229 (-) False oxtr

Expression Profile