RNA id: XR_004580158.1


Basic Information

Item Value
RNA id XR_004580158.1
length 2996
RNA type misc_RNA
GC content 0.53
exon number 14
gene id raver2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21449546 ~ 21531428 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGAGGTGGATGAGATTTGCAGCTGTGCTGTTTATTCGACCCCATCAGCACTGTTCATGTTTCTATCGGTGGAGGTCGCCAGGAGTACTCAACAGAATAGATAGATGGAGCGCacgctgagtgtgtgtgtatgtgtgtgtgtgagagagagagagagagagtgtgtgtgagagagtgtgtgagtgagtgagtgttcaGTCCTCTGTGCATGGGGATCAGCAGAGAGAAGCGAGGCGTCCACCCGACTCAGAACACTCTCCGTACCGCGCGCTGCAAAATGGCGGCCGCTTCTTCCATGCAGCCGCCCACAGCGCCCGCTGTAAAGCGCCCGAATTCCCCCGTGCCGGACTCGGAGAGCCCCGAGAGCCGGCCGGAGGAGGACGGGGCTCCTGAGGACACCATCCTCCGGGACATGGCCGAGCTGGAGCCTGAGGAGATTGAAAGGAGGCTGGAGAAAACTCGGCGAGAACTGAGCAACAGGAGAAAGATTGTCATCAAGAACCTGCCGCAGGACGCTACTAACCAGGAAGTGCATGATATTCTACGCGAGTATGAGCTCAAGTACTGCTTTGTGGACCGGAACAAAGGCACAGCTTTTGTAACACTCCTAAATGGCGACCAGGCACAGGACGCCATCCGTTCACTGCACCAGACGTCGGTGCGTGGTCGTGACATCAGCGTCCAGCTGCAGCCCACCGACTCGCTGCTGTGTGTCACCAACCTGCCTCACACATTCACTGGCACACAATTCCAGGAACTGGTGCGCTCCTATGGCAACATCGAGCGCTCCTTCCTCGTCTACAGTGAGCTTACAGGTCACTCCAAGGGCTACGGCTTTGTGGAGTACATGAAGAAGGACTCAGCCTCCAGGGCTCGCTCGGAGCTGCTAGGTAAAGTGCAGGGCGAGCGCTTGCTAATGGTGCAGTGGAGTGACGTCAACCAGCTCAGCACGGCCCAGCACATCCACTCCAAGTGCCTGTGTGTGGAGCGGCTGCCCGTGGACTTTGACAGTTCTGAAGAGCTAGCACACATCTTTTCTGAGCACTACAAACCCGTCTTCTGCCAGCTGGCGCAGGACGAGGGCAGTGCAGTGCGGGGTTTTGCCGTGGTGGAGTACGAGACAGCCGAGCAGGCTGAGGCCGTGCTGCTGGAGATGGACCGACACCTGATCCAGGGTCAGGAGATCCGCCTGTCACTGTGCAGCCCGGGAACATCTGGCCGCAGCACACTCGCTGCCCTCATCGCTGCTCAGGGAGTGATGCTGAGCAATAAAAAGGGTTTGTTGCCCGAGCCCAATTTGGCTCAGCTCCTAAACAGCATGACCAATCCAGCTGCTCTTCAGGTTCTTATGAGACCATACCACAGTGGCAAGCGtggagGGAAGTTTCGTCCTCACAGTGTTCCTTTTCTCCGACCGCCGCTGACAGCTGCACTGCTTCAGCTAGGAAAAGCACAGCAGAACGCCATGCTGGGGAACGGGCTCGTTCTGCAGAACCTTCTCCACATGCACATGGCACAGCAGCAGCTCCTGCACATCAAGGACAAGCACATCACTAATATTCCCAGTCTTTTAGGAGACCCCTCCCGTTTACTTCTCCATAAAGTCTTGGCTCTGCGAGCTGCAGCCCCGGTGCCGGTGGTGAAAGGGCTGATTGGAGATTCCCCCACTGACTCAAGTCGGGAGGCTGGAGGGTCCGGAGCAGGCCGCGCTCACATGAGCCCCGGGGATCAGAACGGTGTGTCAGCCCCAGACAAACAGCCAGCAGTGTCAACTCACTCTCACAGCCAGACACACGGCTTCAGTTCTGGGTCAAGCAGAGTGGCACTGAGCTCCAAAGCCCCGGTTAACCACAACAGCACTGCATCCGAGAACTGCACACTTACAaCACAAACCAGCTGCCAGATGTCTCTGCTGGGAGAGCCACCTAAAGAGGTGAAACTGCCCTCCAACCCTTACCTAAACATGGCCAGTGTCTTACCTGGAGTGGTGTTGCAggctccctgcagcagcagcagtaaagGCCAGGCGGTCAGTGGGACCTATAGCTCAGTTCTGCCTCCTGCTTCCCTCCCAACCACCCAGTACAGCACTGACTGCAGTGCCTCAGAATACACAAACCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACACAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTActacactccaacacacacattcacacaaaccaGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTActacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTActacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAGGTAACTattacactccaacacacacattcacacgaaCCAGTACACTCAGCAATACTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37101 lncRNA downstream 51688 21389477 ~ 21412173 (-) True G31454
TU36922 lncRNA downstream 78585 21384409 ~ 21385276 (-) True G31298
TU36880 lncRNA downstream 180636 21281364 ~ 21283225 (-) False lepr
TU36702 lncRNA downstream 398123 21062894 ~ 21065738 (-) True G31094
TU36669 lncRNA downstream 503470 20960172 ~ 20960391 (-) True G31070
TU37132 lncRNA upstream 820 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 38428 21569856 ~ 21612822 (-) True G31486
TU37141 lncRNA upstream 71116 21602544 ~ 21603863 (-) True G31489
TU37143 lncRNA upstream 75968 21607396 ~ 21609167 (-) True G31491
TU37144 lncRNA upstream 83893 21615321 ~ 21615675 (-) True G31492
XM_026930493.2 mRNA downstream 62933 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 62934 21386910 ~ 21400927 (-) False ak4
XM_026930465.2 mRNA downstream 85087 21342709 ~ 21378774 (-) False dnajc6
XM_026930457.2 mRNA downstream 85087 21342709 ~ 21378774 (-) True dnajc6
XM_034314869.1 mRNA downstream 85549 21342709 ~ 21378312 (-) False dnajc6
XM_034298204.1 mRNA upstream 7571 21538999 ~ 21579079 (-) True cachd1
XM_026922851.2 mRNA upstream 103139 21634567 ~ 21756087 (-) True ror1
XM_026928315.2 mRNA upstream 233487 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 265132 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 291314 21822742 ~ 21825474 (-) True foxd3
trnap-cgg_1 other downstream 2077348 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 2083349 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2646663 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2647531 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2657111 18794032 ~ 18806750 (-) False LOC113537624
XR_003403848.2 other upstream 2084729 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4369302 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4549721 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 5099401 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 5108405 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile