RNA id: XM_026919936.2


Basic Information

Item Value
RNA id XM_026919936.2
length 2358
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113530144
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9500833 ~ 9509764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGAAATACACACCCACATCCAggtatacacacatgcacacactccagGGAAAGGTTGACACCATCAGTGTTAGTCACTGAAGGTAGTGATGTGGCGGTGCGTGCCTGGAGACTGTTGTGCTGCTGGCTCTGAAACATCCTATTCTTCAAGCAGCCTGAGAACACATCACATGTTCAGAAAGACCTCAGAAGACTTGAGACAGCCAAACTGAATACCAGTTACTGGAGATCCAAGGCAGCAGAGGAAACAAAAAGTCGTTATTCCTTGACTGCATCAGTCGGCTTTGGCAAAAAAGGCGAAAAAAAACTACTGGTGCTTCCTAGGACAGTCGCTGTATCTGCACAGGAGGCCATGGCTAGCCCAGTGCGGGTCCACCCAGACACTGCCTTGCTCCAGCCAGCCCGCTCTGCCTCCAGTTTCTCTGAGAACTCTTTGGCTGTTCTGAAAACGGAAGATGGGACAGTGGAGACTCTAGAGTTGGTGGACAATAAGCCACGGCTGGACAGCACTGATCATGCCCTTCCGGGACTTTACCTGTCCTGTTTCGATATGCTGTTCACTGAGGATGCCACCTGGCTGGTGAGGGTGGCGGACTCCTCTGCATCAGCTGCTAGTGGACCTAATCCAGAACCATGTCCAGAGCCAGACCAGTGCCCTGTGATTGATAGTCCTGGGCTAGGGAGTGAGCCACTGTCCCCTGGCCTTGAAGACCAGGTGGAGGAGAGATCTCTGGAGCAAGTGCAGAGCCTTGTGGTTGGAGAAGTGCTAAAGGACATTGAGACAGCATGCAAGCTCCTGAACATCACACCAGATCCAGTCGAGTGGAGTTGCGGAAATGTTCAGAAGTGGCTGTTGTGGACAGAGCATCTGTATCGACTCCCTCAGGTGGGCAAAGCATTTCAAGACCTGGATGGGAAAGACTTGTGTGCCATGACTGAGGAAGACTTTCGACAGCGTTGTCCACAGTGTGGTGACACACTCCATGCTCATCTAGATATATGGAAATCAGctgcctgGATGAAAGAGAGATGTTCAGTAGGCGAGAGCAGGATCACAGagagagaggagatgtgGTCAGAAGCAGACTCGTCTTGTTCCGGTCAGCCCATTCATTTGTGGCAGTTCCTCAGAGAGCTCTTACTTAAACCACACAGCTATGGACGCTGCATCCGCTGGCTCAATAAAGAGAAAGGTATTTTCAAAATTGAAGACTCTGCTCACGTAGCACGACTCTGGGGTCTGAGGAAAAACCGGCCAGCGATGAACTACGACAAGCTTAGCCGCTCCATCAGGCAGTACTACAAGAAGGGAATCATCCGCAAACCAGATGTGTCTCAGAGACTGGTCTATCAGTTTGTCCACCCAGTATGAGTCCAACAGTCAGACAGATTACAGATTGTTTGCTATGCACTGACAAACTGCCTAAGAATTAGAGTCTATGCACTCTAGtacttttctgtgtttaattGTTTTGGTCTGGACTCTGTGTTAATATAATTTCATAAATTGGcttaaattatgttttattccaaGTGCCAATCAATGTGGTCACTTTTACATGAAGACATTTCAGGATCTGTTTGTAatttcaataaaacattttacatcaGACATTTCATGATTATATAGGTCACATAAAATGCCCGGCTAGTCGCATTGTCTGCCTGTCTCAGTCTAGCTTATTAGCAAACATGTCAAAGTAAATGAGTAATAATCTAGGATCAGTTTTTGCCTTCATACAAGTATTAGGCACTTACCAAATGTGGAAACATGGAACTGTTTTTAGATTTTCATGGTATGAAACATGGaaatttgcttttatttctgtatagtCTTTCTTTAGTTTGAACACTGACATTCACCAAACACATGTTCTTCTCTGACAGCTTTCATAGTGCTATGTCAATGCTTGCAGTTTTTGTTTGAGCAAACCTCCACTCCCTGTGAGAATGAGTGGCCAACTCAGGTACATGTTTGGGTTTGGTCCTGGCCTCCGCCCAactcagctctttttttttttaggtctaaTCACACAGCAAACTTATTAACCCTCCCTAAAGGCATCAACAGTAAAGAAAGTCTTCACCTCACTGAAGTCCCATGAATGGTCATCCTCCATTAGAAGCTCACCTTGTGCTCTCTCTGATCAGCAGCAAATGATGAACTTGTTGGCTAATGGCTATTGTTATTAGTAGTATGTTCTCACAGAGAGTCTCATAAAAATGTTCTTTACGAGTTAAAAGTTAGGTAAGTGGTCAGGTATTAAGGAACTGTTATGTattacatgtgtgtatgtggggtttttttttcttttgttcctgTGCCTTTACTTTTTCCtctggattcttttttttt

Function

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28667 lncRNA downstream 90530 9409908 ~ 9410303 (-) True G24185
XR_003402903.1 lncRNA downstream 165506 9334668 ~ 9335327 (-) True LOC113527743
TU28543 lncRNA downstream 170005 9330480 ~ 9330828 (-) True G24087
TU28529 lncRNA downstream 214178 9279922 ~ 9286655 (-) True G24073
TU28447 lncRNA downstream 430064 9070406 ~ 9070769 (-) True G23991
XR_004577036.1 lncRNA upstream 84732 9594496 ~ 9596485 (-) True LOC113532565
XR_003403357.2 lncRNA upstream 84765 9594529 ~ 9596485 (-) False LOC113532565
XR_004577037.1 lncRNA upstream 84770 9594534 ~ 9596485 (-) False LOC113532565
TU28740 lncRNA upstream 102616 9612380 ~ 9612649 (-) False LOC113532571
XR_003403358.2 lncRNA upstream 102626 9612390 ~ 9615583 (-) True LOC113532571
XM_026932014.2 mRNA downstream 29477 9468540 ~ 9471356 (-) True rps10
XM_026937121.2 mRNA downstream 58988 9435506 ~ 9441845 (-) False tusc2a
XM_034310483.1 mRNA downstream 59013 9435506 ~ 9441820 (-) False tusc2a
XM_026937191.2 mRNA downstream 60273 9435506 ~ 9440560 (-) True tusc2a
XM_026935683.2 mRNA downstream 68236 9429116 ~ 9432597 (-) True hyal2a
XM_026919948.2 mRNA upstream 9614 9519378 ~ 9536904 (-) True ilrun
XM_026941321.2 mRNA upstream 60999 9570763 ~ 9576988 (-) True snrpc
XM_026922310.2 mRNA upstream 74157 9583921 ~ 9587318 (-) True sys1
XM_034312340.1 mRNA upstream 205752 9715516 ~ 9726051 (-) False tnnt2b
XM_026913751.2 mRNA upstream 205752 9715516 ~ 9726050 (-) True tnnt2b
TU28673 other downstream 59023 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1016652 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1016719 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 1016804 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1235604 8262619 ~ 8265229 (-) False mitfa
TU28828 other upstream 205763 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 353603 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 979529 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3728940 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3988841 13498605 ~ 13499984 (-) False slc5a8l

Expression Profile