RNA id: XM_026919948.2


Basic Information

Item Value
RNA id XM_026919948.2
length 3148
RNA type mRNA
GC content 0.41
exon number 5
gene id ilrun
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9519378 ~ 9536904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACATGCCCTCCGAATAGCAACAGCTGACGTTGTGCGTGGTGACGTCACGCGTCCTCCTGAGCCATGCGTACTGAGGGCTCGCCGTCGACTCGCGGCGCTTGTTGTTATGAGTGAAGCAGGCCTCGGACTAAATTAAAAAGTTCTCCCGCCGCTGCCCCGGGAAACCTGCTCATGGAGGGCATGGACGTCGATCTGGACCAGGAGCTCATGCAAAAGTTTAGTTGCATGGGCACCACGGATAAAGATGTGCTGATCTCGGAGTTCCAGAGGCTGCTGGGCTTCCAGCTGAACCCGGCCGGCTGCGCCTTCTTCCTGGACATGACCAACTGGAATCTTCAAGCAGCCATTGGAGCATATTATGACTTTGAGAGTCCAAACATCAACACACCATCAATGTCTTTTGTAGAAGACGTGACAATTGGTGAGGGCGAGTCCGTTCCCCCCGACACGCAGTTCACGAAGACGTGGCGGATACAGAACACAGGATCAGAGTCATGGCCCCCAGGTGTCTGTCTGAAGTACATTGGTGGAGACCAGTTTGGTCACGTGAATATGGTGTTGGTGAGGTCTCTGGAGCCGCAGGAAATCTCAGACGTCAGTGTCCAGATGCACAGTCCAGCCAATCCAGGCATGTACCAGGGCCAGTGGAGAATGTGTACAGCCACTGGACTCTTCTATGGAGATGTGATCTGGGTGATCCTGAGCGTAGAGGTTGGGGGTCTGCTTGGGGTCACACAGCAGCTGTCCTCCTTCGAGACCGAGTTCAACACACAGCCACACCGCAACGTTGAAGGAGACTTCAACCCCTTCGCCTCACCGCAGAAGAACAAGCAAGACGCCAACGAAGATAACCTAAAAGACACCAGAGGCCCCTGGGTGGCCCCGCTGGACTCCATACAGCAAGATCAAAATGGACTCTCTCACAACTCTGTAAATATTACGCCAAATGGTCTACAAAACAACTTATCAGTAGTGACTTACAGCCAGGGCTGTCATGGGCCCTACCCTTTTGGACAGTCTTAAGAGACAAGAATCGTCACCACCAGGCAGCTCAGTGGAGCCGTCACTCTGGAATCCCCCTTTTCTGCGGGGTTACGCAGGGGAGCAACAGATTTTTCTTAACAGATTTCTCAAGACTTGACAACCCTACTCTCCCCTTGCATTACAACACAACCTAAGATATGGACAAGGCTGTTTGGCTCTAAATCAACATTCAGCCATCTTCAACACGCATGTGTGAATGCTAAATTAAGATGAGTGCTAGAAATCCTCAAAGTCAAATAcacaggtttttgtttttattgttgcgTTGCTGCAATAGTCAggtgagctggtgtgtgtgtgtgtgcgtgtgagtgtgagagacaggTAGAGTATGTGTGCTTGTAAGCTTGTGTGTGGACCATGCACAAAAGAGATATGAAAAAAGCCATTGAAAAATAACTTTTGCTTGTCAAGAAGTTTTTATAATTTACTTTGTGAACTGTATGATTTTACTGAGAAATcacttcagtttttaaaaattttgattCGTTCTAAACTGCTCGACAATTTGTCGTCATTTTTCCTGAGTTATTATAGGAGATCTCAGCAGTACTTCTAAAAGTTAAAATAGCTTTCAGGATCACTACACAAACTCAACAGTAGTGCTTGTTAAAGGCCAGAAGGTGGAACTGTTGAACCTCtgaacacatacaaacacacagctatGAAAACTGTAAAGCTTAACAGGCCCCTCAATTTTGCTGAGAAAATTTCACAACCATGGAGTTTAATAGCTCCCAACTGCATTGTTATTGTATTGGTAGGCCCTGTGATATTTTCTCTGTGGTCACTTGTGTGATGTTCATTTTCCTTTGAAGGCCGAGAGCTTTTGAGATTGTGTGGTGGTTTAAATCCTAGCAGCTCACAATTATGGCATAAATGTTTAGCTCAAGCATTAACTTcatgaaaactgtttttaatgCAAGAGTTTTCAGAAGCACATTGTTATGGattatttaggtttttttttttgttttctgtttttttttttttttttttttttcagatccacaaatttttacaaattaaatttatcAAACTCtcttcactctttttttcttctttcataaCTGACATTTCTTATTAAACCCCATGTATAAAATGCAGACAAAAGAATATATACAGGGAAATAATGTTTAGCCTAAATCATGTTTACAGATCAAGGTTATGAAAGGACATGATGTATTCAGTATATGTATTACAtactatttatataatttaaatgaaatttaaacttTGTAAGAATATTAACACTGAGTATTGCAGATTGTTCAATTTTAATGTAATACAATAATGAAATTGGCTGAAATAAGTGTGCAGTATACCAGTTTAAGTCACCATGTAAAACAAGCCATCAGAAAACATATGCATTGCAGATGATGCTTTGTGTCCACAGTTGCTGTCATGTTATGATAAATAGCTAATTGGAATTTCATTTTATGATGATGAGCTACACTAAGAAACATTTGGAAAAATGATTCTCTTTGCTATGCATCTGGTGACTGATGAAGGGATTGTCATTGATGACACATGtgctttgtctttgttttctaTATTGTATATGTTTTGGTTCAAATCACTGATTATCTATGCAGTGTTTGAAGGGGattatctgtgtttttgtttctccaGGTAAACACACTATGTTGAAAATCATCAATGCCGTAGAGCTAGCTGAGTTTGTCTTTGATTGCCATAGAGATTAGACAGGGAAAATTCCTTCAGCTTTCTCGATTGCGAATATTGTGTGCAGCCCACAGCTCAAGGACAGTGTCATTGTTTCATGAGTCAAGTCTTCCTTGGAGTTGTTTTAGTGAATGTCCTCATCCCAACTGCACAGATATAATTATTTCTCATTGACTATTGCTGTCTGGCTTATGTGTGCGAGAGGCTATATTTGAGTGATAAGTAGCTCTGTtgtgctttctttttaaatttctttttgtttgctcTTTGAGTTTTCTGCACAGTGGCATGGTGAATGGATGAGCATAGAGATCTATGGTAGCACATTTAACAAgaagagaaaatacagaaatgaaacCTTTTTCCTGTATGTGTAAATGAACATTTCTATAATTAAATCAATACTTAAGAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28667 lncRNA downstream 109075 9409908 ~ 9410303 (-) True G24185
XR_003402903.1 lncRNA downstream 184051 9334668 ~ 9335327 (-) True LOC113527743
TU28543 lncRNA downstream 188550 9330480 ~ 9330828 (-) True G24087
TU28529 lncRNA downstream 232723 9279922 ~ 9286655 (-) True G24073
TU28447 lncRNA downstream 448609 9070406 ~ 9070769 (-) True G23991
XR_004577036.1 lncRNA upstream 57592 9594496 ~ 9596485 (-) True LOC113532565
XR_003403357.2 lncRNA upstream 57625 9594529 ~ 9596485 (-) False LOC113532565
XR_004577037.1 lncRNA upstream 57630 9594534 ~ 9596485 (-) False LOC113532565
TU28740 lncRNA upstream 75476 9612380 ~ 9612649 (-) False LOC113532571
XR_003403358.2 lncRNA upstream 75486 9612390 ~ 9615583 (-) True LOC113532571
XM_026919936.2 mRNA downstream 9614 9500833 ~ 9509764 (-) True LOC113530144
XM_026932014.2 mRNA downstream 48022 9468540 ~ 9471356 (-) True rps10
XM_026937121.2 mRNA downstream 77533 9435506 ~ 9441845 (-) False tusc2a
XM_034310483.1 mRNA downstream 77558 9435506 ~ 9441820 (-) False tusc2a
XM_026937191.2 mRNA downstream 78818 9435506 ~ 9440560 (-) True tusc2a
XM_026941321.2 mRNA upstream 33859 9570763 ~ 9576988 (-) True snrpc
XM_026922310.2 mRNA upstream 47017 9583921 ~ 9587318 (-) True sys1
XM_034312340.1 mRNA upstream 178612 9715516 ~ 9726051 (-) False tnnt2b
XM_026913751.2 mRNA upstream 178612 9715516 ~ 9726050 (-) True tnnt2b
XM_026913744.2 mRNA upstream 178612 9715516 ~ 9726047 (-) False tnnt2b
TU28673 other downstream 77568 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1035197 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1035264 8481051 ~ 8484114 (-) False tcta
TU28034 other downstream 1035349 8481051 ~ 8484029 (-) False tcta
XR_004580309.1 other downstream 1254149 8262619 ~ 8265229 (-) False mitfa
TU28828 other upstream 178623 9715527 ~ 9718970 (-) False tnnt2b
TU29080 other upstream 326463 9863367 ~ 9868278 (-) False G24516
TU29342 other upstream 952389 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3701800 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3961701 13498605 ~ 13499984 (-) False slc5a8l

Expression Profile