RNA id: XM_026920109.2


Basic Information

Item Value
RNA id XM_026920109.2
length 3722
RNA type mRNA
GC content 0.42
exon number 3
gene id lrrc8db
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18094167 ~ 18106279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATTTTGTAAACTTAAGCACCTCCCCTGCTAGACTTCCTGATTGCAACcgtaaatttttatttatgtgttattcctgttattattattacagactGCGGTTTGGTTTGTCGACATGTTCGTGCTCGTGGGACTATGGATGCTTGGTGTAAATGGCCATAGTGGATTGAGGTAGGCGTTTGTTTAGGTTTGCTGAGCTCGGGGTTGGAGGAAGGAGAAGCGGAGGCGGCAGCAAACTGGTGCAGACTGGAGAGAAAACATCCATCTGTTTTCCAGTCGTTTTTTTCCTCCACCCTAATAATGAGGACACGAAAGGACGGCAGTGTGCGGTGCGTTGCGCAGTATTGTCACTACGCCAAGATGGAAATGAGATAGTGGATGGTGGGTCATAAGCAGACTGCGCTTTAGGATGCAGAATGTTCACCCTCACAGAAGTTGCCTCTCTGAACGACATCCAGCCAACCTATCGAATTCTGAAACCATGGTGGGATGTGTTCATGGATTATTTGGGCATTGTAATGCTCATGGTGGCAATATTTGCTGGGACGATGCAGTTAACCAAAGACCAGGTTGTTTGCTTGCCTGTTCTGGATTCGTGGGAAGAGTCCGTCACCACACAGAAGCCACCAGAAACAGCTTCTGGCCTCGGGACAGGAGGAAACAGAGTGACATTAGCAGCTGCGCCTTTAGCAAGCAAAGACCAGCCTGACACAGTTGTCCACCAGCTGCATTTCTCTCAGCCAGCTGCAATCATACATCCTCAGCCAACAGGTGTGAAAACAAACATGGACTTTCAGCAGTATGTCTTTGTCAACCAGATGTGCTACCATATTGCCCTCCCCTGGTATTCCAAATACTTTCCCTATCTTGCTCTCATTCACACAATTATTCTCATGGTCAGCAGCAACTTTTGGTTCAAGTATCCAAAGACAAGTTCAAAAATTGAGCATTTTGTGTCAATTTTGGGGAAGTGTTTTGAGTCCCCATGGACCACTAAAGCATTGTCTGAGACAGCTTGCGAAGACTCAGAGGAGAATAAGCAAAGAATGACCGGAGGCCTCCCATTACCAAAGCATTTATCCACCAGCAGTGAGGAGGGGAGTCCAAGCCCATCCACACCAATGCTGGGAAAATCCAGTGTTAAATTTTCTACTGAAAAGCCTGTAATTGAAGTTCCAAGCATGACCATATTGGACAAGAAAGATGGCGAGCAAGCCAAGGCCCTTTTTGAAAAAGTGAGAAAGTTTCGTGTGCACGTTGAGGACAGTGACTTAATCTACAAACTATATGTTGCTCAAACTGTAATTAAGACAGTCAAGTTCATTTTGATCTTGTGTTACACAACAACATTTGTTGCATACATTGATTTTGAGCATGATTGTCAACCTGATGTTAAGCATTTAACTGGCTACACCAAATTCCAGTGTACTCATAATATGGCATTCATGTTGAAAAAGCTGCTCATTAGCTACATTGCCATCATTTGTGTTTATGGCTTGGtatgcattcacacacttttttggTTATTCAGGCGGCCTCTGAAGGAGTACTCATTTGAGAAGGTGAGAGAGGAGAGCAGCTTTAGTGACATACCAGATGTAAAGAATGACTTTGCATTCCTCTTGCACATGGTAGACCAATATGACCAGTTATACTCTAAACGCTTTGGTGTCTTTCTCTCAGAGGTCAGTGAAAACAAACTGCGGGAAATTAGCTTGAATCATGAGTGGACATTTGAGAAGCTACGGCAGCATGTGACACGGAATGTGCAAGATAAGTTGGAGCTTCATTTGTTTATGCTCTCAGGTGTTCCTGATGCAGTGTTTGACCTCACTGACCTTGAGATATTGAAGCTTGAGCTAATCCCTGAAGCACGGATAACAGCAAAGATTTCCCAGATGATCAACCTTCAGGAACTGCATTTATATCACTGCCCTGCCAAAGTTGAGCAGACTGCATTCAGTTTTCTCCGTGATCACCTACGGTGCCTTCATGTCAAGTTTACAGATGTTGCAGAGATACCCCAATGGGTTTACTTGTTGAAGAACTTGAGGGAACTCTACTTGGTGGGAAACCTGAACTCTGAAAATAACAAGATGATTGGCTTGGAATCCCTCAGGGATCTGAGGCATCTGAAAGTGCTACATCTGAAGAGCAACCTTACTAAGGTCCCAACAAACATAACAGACTTAGCCCCCCATCTGGTCAAACTCGTGGTACACAATGATGGTACTAAGCTCTTGGTATTGAATAGTTTGAAAAAGATGATGAACCTTGCTGATCTTGAGCTGCATAATTGTGAACTGGAAAGGATACCACATGCCATTTTTAGTTTGATAAATCTACAGGAGCTAGACTTGAAATCCAACAATATTCGCACTATTGAGGAGGTTATCAGCTTCCAACACCTAAAAAGGCTTACCTGCCTCAAACTTTGGCACAACAAGATCATCACCATTCCACTGTCCATAGGTCAAGTAAAGAACCTTGAGTCCCTTTATCTTTCTCACAACAAACTAGAGTCCTTGCCTGCACCTTTGTTTAGTTTACCTAAGCTAAGATATTTGGACTTAAGTCACAACTCCATTGTGGTGATTCCAATAGAGGTAGGATTCCTGCAGAACCTCCAGCACTTTGCCATCACAGGAAACAAGGTGGAAGTGGTGCCCAAGCACCTGTTCAAATGCACCAAGCTGCGTACACTGTGCTTGGGCCAAAATTGTATTTCTTCCCTGCCAGAGAAAATTGGCCAGCTGGTGCAGCTGATCCATCTAGAGTTAAAGGGAAACTGTCTGGACCGCCTTCCAGCCCAGCTTGGACAGTGCAGACTCTTGCGTCGAAGTGGTCTGATTGTGGAGGATCACCTATTTGACTCTCTGCCGATAGAGGTCAAAGACAGCATTAATCAGGAAAGCAATGCTACGTATGCTAATGGAATGTAGGAGTTTAGTAGAGAAGGGTCTCTACATCTCCCTCTGCTGGTCCTCTTTTGACAAAAATCTGGTATCCATGTTGATTGGGATTATACAAAGAGGGCacaatgttttctttattgctAAGGTTTGTAAGAAGTTTGTCAACTGGTGAGGAAGGTTTGGCTCAGGACTTGTTGCACCTAaaagaaatgctttaaaacACTGGAATTAAACAAATTAGAGTTGATTCTGTTGTCTACAAACTAAACAAGAAGACCAGTAGAAAATAATTGATGTACTAACAAAACTTATTGATTTGACTGGAAATGCTTTAAAAACTATGAATGACTCTGTTTGCAATACCTTTATTTCCCTGATACAAAGCCAACAGTTTCATGTTTCAAATGCAACCCACTCTTTCTGCagtcttttcatttgtttatgctgccatgttttgtattttaactAATGGCTTTCCACACAGTACAACCCACACTGTGGTGCAGTTACTgactgtatttattcatttttgtaagAAATCAGGAAAGGGatgaaagaaacaacaaaaaaagaaaactcacaCAGATCTTTATGTATGGCAACATGTTATAAGGAACCATTAGTGCACCCAATGCATGGTCCTTGCTGCTCATAACACTTCAGCATAGAAATTGTTCTAATATTTATTCTGCTACTGTTCTACATGTTAGTCAGAAGTCTTGTATAAAATCAGAGTTTATGTTAAAAACTACTGCTAAACATTGTACTGGTTACTACTGGTTTTTGCCTTATAAACAGTTTTCGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34503 lncRNA downstream 251347 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 251347 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 379802 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 456150 17637327 ~ 17638017 (-) True G29213
TU34457 lncRNA downstream 582712 17487361 ~ 17511455 (-) True G29196
TU34596 lncRNA upstream 44318 18148228 ~ 18148749 (-) False zgc:153916
TU34718 lncRNA upstream 348558 18452468 ~ 18452976 (-) True G29439
TU34829 lncRNA upstream 510447 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 510959 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 530168 18634078 ~ 18634357 (-) True G29551
XM_026924048.2 mRNA downstream 3851 18083721 ~ 18090316 (-) False znf326
XM_034311248.1 mRNA downstream 3851 18083721 ~ 18090316 (-) True znf326
XM_034312426.1 mRNA downstream 298816 17794638 ~ 17795351 (-) True LOC117599332
XM_026917615.2 mRNA downstream 437957 17637150 ~ 17656210 (-) True brdt
XM_026927028.2 mRNA upstream 12495 18116405 ~ 18126912 (-) True lrrc8c
XM_026927035.2 mRNA upstream 12495 18116405 ~ 18126911 (-) False lrrc8c
XM_026917991.2 mRNA upstream 44375 18148285 ~ 18195628 (-) True zgc:153916
XM_026920882.2 mRNA upstream 345347 18449257 ~ 18464571 (-) False lmo4b
XM_026920872.2 mRNA upstream 345347 18449257 ~ 18464571 (-) True lmo4b
TU34546 other downstream 21258 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 144449 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 564852 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 813994 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2624938 15461950 ~ 15469229 (-) False oxtr
trnae-cuc_6 other upstream 473314 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 690122 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 712349 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 713217 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 1276531 19380441 ~ 19380512 (-) True trnap-ugg_1

Expression Profile