RNA id: XM_026920191.2


Basic Information

Item Value
RNA id XM_026920191.2
length 4186
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC113530316
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9942055 ~ 9954145 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGCGTGAATGTGGTTGAGAAACAGTTCAGAGGAGTTTcttttaaaacaggaagtcGTCGTGCTCTTTGAACAGCTCGCGCTCTTTGCGTGCTCTCAATCACATCAGCGCGTCAGAGATGCAGCTTTATGTCTGTTAGTCACTTCACTTGCGAAAGGATATACTATCTGTGATTCTGTAGGCTATCCATTGCGGAACTTTTactctcttttctttatttccgTTATAGTTGCGTTTAGGAACATTTCAACTAGTTTAGCTGGTTAAAAAAAGGACGAAAACTTTTCCCCAATGAATAGTGATTGTGAAAACAGTGCTGTGGGGTTCGCGGCTGGAAGCGGCCAGGACGAGCTGGACTTTCCCTTTCCTCTGTTTCTTTACGGACAAACTGGAAATGACATTCCACACGATGACCAAGCAGATGAGCTTGATGCTCTGTCACACCTCGATGCTAATCCACCCTCGTCCAATTCTCATCAGGCCCATGCTCCATATAGCGATCTGTCCATCCATCAGCCTTCCTATAATCCTCCACCTTCTGAGGACCTCCTCACCTGTCATCACCCTGATCTGCGAGATCTtctcagtcactcactctcATCCCAGGCTAGCCCTCGCATTGAGATTACCTGCTCAGAGCTACACCACCAGCACCGTGAGCATGTCCAAACAGCACCAGTGGATATCAGTCGGCGTCTAGCTGTGCCTCCGTATCAGAACCTGCTCTACAGGGAGAACCTGAGTCCGGCAAGCAGCACTTCCTCCAGCTGGCACTCGGAGGTGTATTCACCCCAGCCATCACCCTGTGTTTCTCCCAGTGCTTCAGGAGGTGGAGGTTTAGCTGCAATGACCGTGGCTGAGTTGTGCCCAAGGCTCCAGGCCATCCATGCATCCGGTTCTCCCCGTACTTCTCCAGATACATCCCCACGCACCAGCATCACAGAGgagactttcctgaactgcaGGCCTTCATCTGCCTCCTCCTCACGGCCAGGTTCGCGCTCCACTTCTCCTCAGGGAAAACGCACTTATGAGCAATACCAGAACCCTGCCCTGGTTGTCCCACGCTCCCGAAGCCCCTCTCCTCATGCAGTCCGAGAGGAGTTTATCGAGCCTTGTAGACCAACAGCTAACCCTGATGAATTTGTAGACAGCCTCAACAGACACCTGGCTAAACCAGTGCCCACAAAGATTGGACGGCCTAATCAGGAGTACATGCTCTACAGCCAAACAGAGCATGCTGTGTTCCATGAAGTGAAGAGGGAACCCGTAATGGAACCGATATATGTCATGCCATCCATCGGTTGGTCCAATCCGATGCCCACAGCCATGTGCAGCATGTCATTGGCATCCCTGCCTGCTCTGGAGTGGACGCTTCCCAGCAGCACAGAGCAGTACGAGCTGAGAATAGAGATTCAGCCCAGACAGCACCACAGAGCCCACTATGAGACTGAAGGAAGCAGAGGAGCAGTTAAAGCAGTATCAGGAGGACATCCTGTGGTTCAGTTGCACGGGTACAGTGGGCGAGAAGCTCTGGCACTGCAGGTCTTCATTGGAACAGCTGACGAGAGAGCCGTGAGGCCACATGCCTTTTACCAGGTCCACCGTATCACTGGCAAAACCGTCACCACCAGCAGCCATGAGAGAATGGTGGATGGAACCAAGGTTCTGGAACTGCCACTGGAACCCAAAGACAACATGCAGGCAGTTGTGGACTGTGCTGGGATACTGAAGCTGAAGAATGCTGATATTGAGCTGCGGAAAGGTGAGACAGATGTGGGACGGAAGAACACACGGGTGCGGCTGGTCTTTCGTGTCCATGTGCCTCAGCCCAGAGGCCAGTGGCTTTCTCTCCAAGTGGCCTCACATCCCATCGAATGCTCTCAGAGATCTGCCCATGAACTTCCAGCCGTGGAGAGGCAGGATTTGGACCACTGCTCGGTGCTGGGCAGACTGCAGATGATCCTGACTGGTCAAAACTTCACCTCTGAGTCCAGGGTGCTATTCACTGAGAAGACCCAAGATGGCTTGGAGGTATGGGAGATGGAGGCTACAGTCAACAGAGAAAAAAGTCAATCAAACATGCTGTATGTGGAAATTCCTCCATATCGAGACCACAACATCTACCACCCAGCCAAAGTCAACTTCTATGTGTTGAACGGGAAGAGGAAGCGTAGTCAGCCACAACACTTCACCTACATGCCTCTCCCAGTTCCACTGATAAAGGCTGAGCCAGTGGATGAGTATCAGTATGGACAGCTTGGCTGCAGTGTCTCCCAGGTCTTAGGTGTCTCTTCACAATCATACCATCACACTGCCCAGCTCCCTACCAGCTGCTGTGCTATACCATGCCAGGTTTCTCAGAGAGCCAGCAGCCCTACCCTGTACCCTCCAGCCTCTGAGTACCAGCTCCATCAGCATTCAGCCCTCTACCAGAGCCAGGTGGAGGCCCTCAGCAGCAGCCCTGGCCACTACCAGCCTCCCCTGGATCACCCTGCACCTGGAGTGCAACCCATCTGCTCAGGTCAGGCACCTGCCGTAGGGCCAAATCCAGGCTCTCATCTCAAACCCAGCAATTACCAGCACATCATAGCTGGGCACAGCTACCAGGCTGGTGTCTCTGTGTTTCCAGGCCTGgatgcagccaatcagagaagCTTTGGTCAGAGAGCAGCTCCTCCAGTGCAGAGCTACAACCAGCAGCAGCCTGTGGAGCATCAGAGAACAAGCAGCCCTGTAAGAGTGAAGCAGGAGAATCTGGACCAAGCTTACCTGGATGATGTGAATGAAGTGATCAGAAAAGATCTGACTGTTCATCCCAGTGATCAGTGACAGCCGTAACTTCTGGACAACTCATCAGCCTCCACGTCTGCACAGATTCTTTATGTCATATCAGAGTGTTTTTAAAGGGGTGGTGATAGttgttaattataataatgactGCAGATTGCATATTACTGATAATCACACAACTAGTAAGGAGTCAGGAAAAACACATTACctttaatttcaaattattgctaacaaaaatattttgtcttgGAACCCACATGCAAGTTAGCATCTACAACCAGTTTTGAATTTAGGGATCATTTGGGAGAATCCACTAGCTGCCTTAGCTAACGCAGACAAAAGCCAGTGAATAAAGGCTTCTAATAGGAAACCAAATATCTGACCATCATTACAATCGCAAACCTGAATTACTTGTTCAACAGAAATTTGTCAGATGAGCTTTCTTCTTATTTACTGTTGCATAGTGACAGGCAGATGTACATGTTTGAGAGTGCTAGCTCAAACAAGAACTGTCCTAGAGAAGAACATGATTAGAAACTAGTAGGAAAACATGAAGGTCTTCCCAAAGTAAGTAGTGTCAGTGACTAAAGTATATGATTTGTAGCAGGTACATTCAACAAACAATAACGTTATAGCTCTAGACCTAAATACAACAAGGCAAAAGCTAAAGTTAATGTTAGCCAAGCAGATACAgtagtgttagctagctattttacCTCAGTTTGACTTCTCATTTGTCTCGAGGCTGAGAGAATCGACAACTTGTCCTTTTAGTCTGGAATATAGGTGGAATTGCAGATTTCAGAATTTTGCATGGTGGATATcccagctttaactcagctttttAGATTCAGTCTTTCAGTCTGTTGAAGTCCTTGCTACATAATTTTTCTCTGCCATGTTAACTATTCCTATAGCTGCTACCAACTTTTTTGCAAAGTTCTTTTTTGTAGATAGTTGTGGAAAACAGCACCTTTAGTTCTCAGGTATGCTGCACTCTGCTAGtattgaaattaaatgaacAGTATGAGGTACAAGCACTATATGACTAATGCTAGCTACCAGTCAGGATCAGGTACTTGTCATGAGATTTCCTGTTGATTGTATGTCATGTATGTGTAATGCATCTTGGGGGTAGACAGAAAATTGATGGACATAAAAGAGACAGTGATACAAAATTGAGGTGCAATACCATGCTACAGAATACTACAAAACATGACAAATAATATGTTAACCACCAGTTTTATACCAGAATGATCTTTTAGTTAACAGTTATTTTCAATGATTATGTCATTCAGTTTTAATGGACTTGTCTAAGATAAAGTACAACTATGAAATATcagtcagttaaaaaaaatttttaccctgatattttatttcacagatgTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29143 lncRNA downstream 3012 9938256 ~ 9939043 (-) True G24572
TU29081 lncRNA downstream 73777 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA downstream 73777 9863367 ~ 9868278 (-) False G24516
TU28757 lncRNA downstream 266316 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 305536 9635854 ~ 9636519 (-) True G24260
TU29184 lncRNA upstream 197672 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 206887 10161032 ~ 10161241 (-) True G24617
TU29193 lncRNA upstream 214066 10168211 ~ 10168469 (-) True G24620
TU29196 lncRNA upstream 216825 10170970 ~ 10171175 (-) True G24623
TU29745 lncRNA upstream 974706 10928851 ~ 10934133 (-) False itcha
XM_026921922.2 mRNA downstream 185459 9752621 ~ 9756596 (-) True csrp1b
XM_026930147.2 mRNA downstream 192291 9743031 ~ 9749764 (-) False tnni1b
XM_026930138.2 mRNA downstream 192291 9743031 ~ 9749764 (-) True tnni1b
XM_026913751.2 mRNA downstream 216005 9715516 ~ 9726050 (-) True tnnt2b
XM_026922415.2 mRNA upstream 24728 9978873 ~ 9982851 (-) False ube2c
XM_034310863.1 mRNA upstream 24728 9978873 ~ 9982280 (-) True ube2c
XM_026926845.2 mRNA upstream 28920 9983065 ~ 9992886 (-) True LOC113534196
XM_026918173.2 mRNA upstream 40204 9994349 ~ 10006093 (-) True pcif1
XM_026918181.2 mRNA upstream 40210 9994355 ~ 10006069 (-) False pcif1
TU29080 other downstream 73777 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 223085 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 500245 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1457874 8481051 ~ 8484181 (-) False tcta
TU28036 other downstream 1457941 8481051 ~ 8484114 (-) False tcta
TU29342 other upstream 535148 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3284559 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3544460 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3678117 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3919569 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile