RNA id: XR_003403149.2


Basic Information

Item Value
RNA id XR_003403149.2
length 9058
RNA type misc_RNA
GC content 0.47
exon number 14
gene id LOC113530384
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5111462 ~ 5201212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGCGTAGAGACGTAACTGAAGCGCAAATTAAAgagaaaccaaaagaaaaaaacatagcgcaaaaagtaaaatgtgtcaCAAGCCACAGTTTTTAAATTGGCCttatatttgtgatattttcattttgtcatCATTAATAACCTTCAGCTCACTACATAACCAGCTAAGCAGTGAATCCTTGTCCACTGTGCCTGGTGCGCGGTCTCCTCCCACTTCTGTCGTCAAAGGAGGAATTGTTAGCTTGtctgttagcatgctagctaactgCGTTCAACTATGCTAATGGGTGGCAGAAGATCATAGGAAAGAGGATGATACAGCAAACCTTCAGTTGAAACTGTTGCGAAATGGATTTACCAAATTGACAATCGAAGAGGACTAAAACCAGAACAAGGATTTTGTTGTAGAAGATGCTCTAGTTGCGTTTTCTTTATTAGACAATCAAGCAGACTAATAAGCGCTCCCGTTTGTCAACGTTTGTCCCAGTATGATGGAGGTGATGTCGTATGACAGTAGTTTGTATGATATTATCTAGCCAACTGCTATCGTCGTATGATAATGTCAGTATCAGACCTGAATTTGGAACATAGAAATATGTGTTTTGGTAACGTATGCGTTGAATCGTGCTTAACACGCACATGCACTTCTGCATGTATTTCAGACATGTCAGTTCGCAGGCAACCTAGCAATCGCTGACCTGGGAAAGTATTTTAGCATTGTAGCTAGCTTGTAGGCACCTACCTGCCTAGTTAGCATTAGAGTATTTTTGTTAAGCTTTGCACACAAAATCAGTTCGATTTCATTGTAGCTGATCATTGTCATCACACTAGCTGGCAAATTTTATTTTGACCTGTGATTACTAAAACGGGCTGTACTGTTTGTTAGATAGCGTTCTGCTAACTACGTCAGTCCTTAAACCGGAGCTCGTGCGCTAGCCGACACTTTTTACTAAAGCACAGTTACATTTGCCTCTCTCTACCTAGTGAAGACACAGTTTTATGAAATGCATCACGCTGAATCATCTGGGGATTCTCCCGGGGCCAAGAAGATGGCGCACGCATCTGTTTTTACCAGTCGTAGGGGCAGTAACACGGGAAGTGGTGGTACGTCTGCCTCGTTGAACGCAGTCAGCATGAACTGTAATGCCATCCCGACTGATGACCACCAATCATCACTATTAATCCACCATACACCCCCCGCTGGATCATCCTCACCAAGCCCTCATCATCCTTCCACCAGCCTGAATGTACACACGCAGTCTCACCAAAGTGCTGGGGCCCAAGTAAAAAAGAAGAGTGGCTTCCAGATTACAAGTGTTTTACCGGCACAGGTTAATGCTAGCACTAACAACAGTATAGCAGATGATACAGAGAGCTATGATGATATGGATGAATCACATACTGAGGATCTATCCTCTTCTGACATTCTTGATGTGTCTGTGTCACGGGCCACTGACACAGGGATTCCTGAGAGAAGTTCTTCAGAAGAAACACTAAATAGTCTACATGGAGGAGAGACTCCTGGAGTTATATCACCCAATGAAACAGTGAATCCTCACCTGCACTCTGTTCAGCCAGGATATATGGTGAATGGGAATGTTCATCACCATAGCCATCATCCTCCTGGACACTACAAGGACCAGGGGGTGACCTCAGTGGCTTCACCACAACAACCATTTCAAGGGGTACCTGTGTGCTCTGCATTACTAAACAGCAGTGCTCCATCTGCAGGCACCACTGTGCAATCTGTTGCTACTGTCCAGAATAGAACCCAAAGATCTGCTTCAGtccaagctgctgctgttgatgTTAGTGCCACTGGAAGAGCAAACCAGACCATATTGTCAGCATCAGGCTCTACATGTGGTGCCAGTGGAGCTGGGATGCCAGGGGGTGGGATTGGGTCAAATGCTATTGGAGGAGGCCTCCTTGGTGCAACAGTGCCTGCAGGAAACAGTACAACAGGAATTACAGCAACAGCTGTGCAGCCTCCTCCAGCCTCCAGCACCACTCAAAATCAGGCTTCCACAGCAATTGCGTCCCGTTTCAGGGTGGTGAAGCTGGACTCCAGCTCAGAGCCCTTCCGAAAGGGACGGTGGATGTGCACAGAGTATTATGAGAAAGAAGCTCCTGCTGCAACTCCATTTGCAGATGCAGCACCTACCTATCGAGCTGTGGAGAGCTTAATCCATTCTGAGAGTGAAAGCACAAGTGGAGGTTCATCTAGTAGCACAATGAGTGGTGCAGGAGATCAAGGAATACAGCCTACCCAGCAGACATTTGTACAGCCTGCTGTCCCTGTTCACCCAAGTCTTCCTCAAACAACCCCCCAACTTCATACACATTCGCAAGATACTGGAATGCACACTCTTGCTTCACCACCTGTAGCCTCCCCTAACAACCCACAGGTTGTTTCAGTCCCAAGTCTATTAGGAACTGAGGGTCAGCCTCCCCCTCCCAGGGCCCAACAGCAGATCTCCTACATCGTAGAGGGCCACACAGGCCATTTGAAGAGTGGCTACCCTGTAAATCAACAGCCCTCTATGCTCATGAACCAGGGTTTGCAGTCAGTAGATTATGCCCAGATTTCACAGGGCATCCAAGCCCCAGCTCAGTCTCATCAGATGCTGCCAGTTCAGAGCAGTATAACACCTAGGGCTACCCCAGGACCTAGCCTTCCAGTTGGGACTCCCACAATGGCTGTCCCACCGTCTGTATCTCCAAGGCCCCAAGTTCCAGTTCCACAAATGGTGTTGGCCCAAGGAAGCACAATAAATCAGGTCCAGCAACATCAAACACAAATGCCTCCAGAGCAGCAACAGCAGGCCACTGCTAATCAGCCACCCCAACCAACATCCTCGACTACAGGCAAGACTGCATCTAGTATACCTTCGTCTTCTCTTCAGAGCAGTATTCAACCAGGCATTCCTCCTTCCCTCCCGCATGGAGGTCCTGTTGGTGGTCACTCTGGTGGGCTAGATCTGACCTTGAATCACCAGGGAAGCCAGTCCTCCCAGCTTCCCATAGCAAGAGGCCCTTACAGTGGTGTAACTCGTCTGACTGCCTCCCAGCTCGAAGATGCTGGGCGTCTACTTTTCCAACACCAGTCCCTACTTTCTCTGCCTCGGCTAGCAACAGGCGGTGTGTTGGGGCTTGCTGGACAGTGTGGCTCTGAAGCAAGTGCCAGTATTGGACAAGAGGGCAGTGCCAGTGGAGATGCCGGTGCTTTAGCCACATCTGCAGGCACAGATGAGGACAGGTcatcatgcacaaaaaaaaagttgtgtttttttcaggaACAGTTAAGGTTGTGTTCCATAAGGGGCCACTGGGAGATCTCCTTCAGGAGCCAACTGAGGAGGCCAGGCTGATCAAAAATAACCCGTGTCTGCAGGACAAGTCAGCACCAGTGAAGGAGGAGCTTGTCAGACAAAATGCTCTGACTGTGGTCCGTCAGAAAGAAGGTGACATCTCGGACAGGAGAGAAATTTATGGTGAATACATCCTGCAGTTTGGCAAATACAAGGGGAAGTCCTTCTGGTGGCTCCTTGAAAATGATATGGGGTACCATCTACCTGATGAAAAACTTTGAGCAGGAAGAGGCTGCGAGAGTCTTCATGGCAGAGGGGCACAGCAAGAACAGTCTGTTGTCCTTTGTCAATTATGCTCACAGCTTTGAGTAAATCCAGTCTCTTGTTAGGTATGTGTCCAAAATTCCAGCTGCACCAACATCCTCATCGGAGGATGACCAGCTGGTTGGATTCGGAACTCGTGCAAAGAGTACATGGCGGGAGAGTTGGAACAGCTGGGCTGATGGTTATGCTTCCTTCATAACGGGGGCAGCCTGTGTCCCAGGGACACAGACGTACAAAATGCAGCAGTACCTGTGGAATCGGCAGCAGTCAGCCCGTCTGCCTGTGCTTGCCTCAAGTGCCACATCTGAGCCCAAGGAGatggatgaagatgatgaattGGAGAGTGCAATGCTGAACATCTCCCCCTCCAAGCTACGGGAGCAGTctccaccatcaccaccatcatcatcctaAGCTGCTGAACTGAGACAGTCTACGGAAACAGGAAAAGTGTTTTGGCCATGTTTCACTAACAAATGTGTGTGCCGTTGGCAATATATTAGTTGCCTATGAATTGATTCCTCAACCATGATGAACTGATACCAGCCACAATTAGGATaagtactctttttttttaattaatattattattattttttatatttattgttaagttttaaatatttctgtctACTAACACATGATGAAATGTATGTACTTGCATTTTGCCTTTTAACATCCCTTGCTTCAGTCTGAAATGATTGTGGACATTCCTTGAGCAGGCATAATGTATCCTTTTAATTTGTAGTACTAAGATAAGCAGGTGAAGTAAGAGTAGGGTAATTTGAACCTTTTATTAACACAAATGACAAGAGTTTGTATCCTGAAATACCATCTGCTGCCCTCTCCATACCACCTGCTGACACTAAAAAGAAACCAGTTGATggtaaatatattataattgtgCCCATCTATTCAAACATCTGTCTCGATTACTGtggtactgttttttttgttctttgtttttgtgtcttttccTTTTAACACCAGTCTTGCCAGCTCTGAAATCGCCTGTGCCCCTTCCTAAAGAGCTGATGTTTCTTGTGCCAGAACAATCACGttccacacacactgagagaacGGTTTCAACTACAGGAGACAGCAGCATCATAGACAGCTCTCCAGTGTGCAGGACACTTACTTTTGGGGAATGTGGCAAAGATGAGACCACTTCACATAGTGTCCCACGCATAGCTGAGGCATCACATGAGCCATTCTCCCCTTGGTTCTTCAGTGTGCAGCCCACCGCCTCTGCAACAGACAGGTCAAAtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCTGCAGTCACTGGGTGTCCAGTCTTCTCTGCAGCAGGAGATTACTTTCCACATCAGTTTTGCAGGCTTATTCTATTAtccacagttttatttattgttttggcAGTGTTCTTGCCTGCTCTAAACATTGTGTTCTTTTGTTCTACTAACTAATGTTAAAGGTTGAACATACTGGTGATGAGGTTCTGCCGCagccaccaccaacaccacatACGGTCTGCCATCCTCACATACCACCACCTCGTGTGCCTAGCACTTCGTCTCAGTGTAAAGCCCCTGCATCACTGTCCGGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCttaccagctgtgcagtcagtACCTGCTGAACATGCACCAGTGCCCTCCATACAGACAGGAGCCCCTGTGTACAGTGACATGCAAGATATTAGCCACTGGAACTGCTCCTGCCATCAAAAAATCTGGATGAAAACAGAGATGGAAGCCGTGGGGCTCTGGCCACGATCACGACCAGTGAGACATCCTATGAACATGGTTTCCTTGTGGCATTATCCTCCTCAGCCTGAGCTTGTAGAAACCAACACAGGCCTGCCATCAGCAAAATACTTTCAGCTCCATCCCTTCTTCATCTGGAAACTGGAGCACAGTATAATGGAAAGGCTCAGAAACAATTACATCCTGCCTTGTCTCTACAGCTGTCCAAACCCTTAGGTTGTTTACTCTGGTGTAGAAAGAGTGATTCTTGGTCCCAGCGGGTAATATTACATCTTTTCCTCTTGACTGTGCTGTAAAGCATGCAAAAAATACTGGTTCACTGATAAACCCCAGTGGCTAGACATGCTGCCAAAGCATTTCCGTAACCTCTTGCCAGCCTTCCTCACCCATAAGAAGGCCTACCTAGCCTACCTGCTCAGCGTGCAGAACATCAGGGATGTTGAGGCAGGGCTGTATGGACAGAGGACTATCACTGGAGCACTGAGGAAGAATGACACACCAGCACCGTTTGGGGGTTACGAGGACACTGATTGGTGGCATGGGGTGTCTGTGACTGCACACTATCTGGTGGAGTGCCTTCTTCAAGAATATCAGCGGCAGGAGGCAGCTCTCACTCAGGTCCTACAACGCACCTTTGGACAGGTGTTCAGGTCTGATCACACATGTCTCATCTGGCACAATGTCATCCTACACTGTGATTAATGAGAACTGGTTGATCCTGTCCTGGGTGATGCTGCAGTCTGAGAGTGAGCAGTCCTTAGTGTCAATGTACTGTGGGCTGGCCAATCGCTATAGTGCTGCTGGTATCCCCAAGGCCAAGTACCAGTGGGTAGACAGGGGCTGCTGTGCTGCTTTCAGAGTCATGGACCCAGCACCTTATGAGCACCTGCAGTGGGATGCCTGGAGGACCACTGAAGCTATCGTGGCAGAGGTTACTGCAGGGAACCTCAAGAATTTATGTGCCTCTTGCCTGAAGTACAATGAGGACATCATTGTTAAACTGGACTTATTTCACTGTATGCGGCGGTTCACCGgggagtgtgtgtcagagcacCATCCTCTGTATAGCTCCTTCTGCCTTCTCCTCTCTGCTGCCTTCTCTGTAGTGGATCAGAGTGACCTGGAGAAATTGAAAAATGCATACAAATTCTGTGGTATTGAGCCTGCTAATCCCACCAAGCAGCATATCAGAGAGCACTGCAGGACAAAAGACATCCCAGAGAACTGGTCCAGAGAGGTGGAAGAGGTGCTTCAACATTTCCATCTGGCAAAGGATCCCAACAACATCCTCCTTTTTAAACCCTCAATGCTAAAGGTCTGGTGGATTCAGCATATACACATGAGGCTGTCTTAGTGACCCTGAAGTGGAGGGAGGAATCCTCTACAGATATGGGGGAACCTTACAGCTCAATCATGTAAAGGGTGAAGGAGCTGGTGTGCCCATTTGGATCCCTGTCAGAGGCACCTCACAGCAGGAGGGGTTTCATTTCCACCCAACTCAGTGGGTAACAGGCAAACGTGTCTCTCCTGAGCTGTTCCAGGCACAGGGAATGATTGAGGTGTCACGCTGTAATTATCAGTGGCTGGTGGACCTGAAGCAGCCGGGGGTCATCCTGCCTGCAGTGTTTGGCCCTGTGTTAATGATAGAGTTAAACAGGGCCTCTGTGAGAGTGACAGGGCAGCCCAAATATCCAGCCTTGCATATCTGCAACAGGGACACAGGAGAGAGGTTTGGCCTACAGTATGTGGAGCCAGGCTGTCGACCAGTGCCTCTTGACTTTGACAAACATAAGTGCAAGAAGTCTGTCCTAGGAGATGTGGAGATTGAAGAGGAGTCTTCATCTGGCTTTGAGTCCTCAATTCCATCTAAGGAATGGTTAGATGATTACTCTTCTGCTGAGACCCCTCTTGCTGCAGAAACAGAGGCCACCCCACAGATTGTCTTGTTTCACCAGGTTTCCACTCCAAGTCCTGTGACAGTAAAGGAACAAAGGTCTGAGGAATTTCTGTTAGATGCagAACTGCTGAGCACCCCACCACTGCCTATAGCTGCTTCTCCCCGTGCAGCTCGCATTGGACCCATTAAGACAGGTGGTCGAGTCTTTGTCTTGGAACACAACAGATGGACGGATCCAATGAAAAATGCCATTGATGGTCTCCTGGCCAAGCACCACGGGAGCAAGGATCTCCTTAAAAGGGTGGATGCTGATTATGCTGCTATGGTACAGAGTGCCTGCACTGACCCCAACAGCCTCCTGCACTCAATCACAAAACAACACATAAGCATGTACATAAAACaccttgctaaaaaaaaaacaacaacaacaacacaaatgcCTCTCTCAACACCAGCCCAGAAAAGCTCCTAGAGACACAACAGTTATGGAAGCGTCTTAACTCAGGCAGCGAAACCATCAGTGTCCCAGTGACAATACTGCCACCTGTTCCATTCAATCCACCTGCAAAGAGCACTCCTGAAGATGTCCCTCTGACCCAGGCAGCAGTTGAGAAGATGGTTAAAGACATCCTAGAGAAGCACCAGGCAGcactgcaacaacaacagcagacacaaaaaaaacaaattagatCCTGTTTAGCTTGTGGCCAGCCAAAGTCTCGTTACCTAGGTGATGGCTCCTCTGTGCATTTCTTTTATCAGGCTGGTGACGTTAAATACTTCTACTGCTCCAAGAAAGTCTTTGACGCATACTCTGCTGAGGGCCTGACCAACCCCAGGATGCCATTTGAAGATTTTGCAACCAACCCCAGGATGCCATTTGAAGATTTTGTAGCTATGTTTCTGATGTCTTTTGCTGAAGAGCAGAAAGTACAACTAATAAAACgtactaaaaatatatttatagctTGATTACACTTTGTCAGTGTTTGGTCCAGCTCACGTAGCAGTGATCCAGTGGCAGTAGGTCTCGAGTCAACAGTACACCGATACTGTGACAGTAGTTCTCGAGTCAAGAGTCGGTTACACCCAATGGCTGCAACAGTTCTCGAGTCACCGGTACACTGAACTGAGTACTGTCTCGGACTCGGACATGTCCGCGTCGCCGATGCTGGGAACCGATGAGTGAGCTTTTTTGCGGGCCATGCCCCTCCACCAGGCCTAGCCCTGTaactttgatatttttttttattgttattatttattcatttatatttatcatattaaaagtgaaaacatttctgttaaatgtttttgtaaaaagaaataaaaacaaaaatcgggaaaaaaaataataaaatgaaaacacacctTGTTGCTCATATTTACAGTCACATTTGGGGAAGTCACATTGATGTGGTGCTTGACCTGTGACATTAAAATTGGCATGTGCACTGAGCAAGTCAGACGGCATTGATACCTTTGAGAGTACGCGGTTGGACATTCGCTGCACATTCAAAGTTGTCTCTTCTATTTatagaagaaataaacaaacaaaaagggtATTTTCTTACTCTAGAGTGGACAACCAAGTACAACTgaatatattcttatattttctCCCGTTAAAGCTCACTGAATCTAAACTTTCAGCTAATCTGACTACAGCAAATAGATTTTAAtaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577182.1 lncRNA downstream 168735 4939698 ~ 4942727 (-) True LOC117596013
TU26010 lncRNA downstream 213847 4896938 ~ 4897615 (-) True G21815
TU26005 lncRNA downstream 284539 4826550 ~ 4826923 (-) True G21810
TU25936 lncRNA downstream 325727 4784833 ~ 4785735 (-) True G21751
XR_003404675.2 lncRNA downstream 334131 4775288 ~ 4777331 (-) True LOC113545964
TU26169 lncRNA upstream 26874 5228086 ~ 5228366 (-) True G21944
TU26186 lncRNA upstream 66273 5267485 ~ 5268043 (-) True G21960
TU26189 lncRNA upstream 123947 5325159 ~ 5325523 (-) True G21963
TU26201 lncRNA upstream 129614 5330826 ~ 5331138 (-) True G21975
TU26253 lncRNA upstream 205723 5406935 ~ 5414066 (-) False LOC113533127
XM_026945530.2 mRNA downstream 209451 4813730 ~ 4902011 (-) False obsl1a
XM_026945533.2 mRNA downstream 209451 4839827 ~ 4902011 (-) False obsl1a
XM_026945531.2 mRNA downstream 209470 4813730 ~ 4901992 (-) True obsl1a
XM_026945532.2 mRNA downstream 228050 4813730 ~ 4883412 (-) False obsl1a
XM_026945422.2 mRNA downstream 391835 4717410 ~ 4719627 (-) True inha
XM_026925778.2 mRNA upstream 9284 5210496 ~ 5219287 (-) False nufip1
XM_026925773.2 mRNA upstream 9284 5210496 ~ 5219287 (-) True nufip1
XM_026913359.2 mRNA upstream 63700 5264912 ~ 5324988 (-) False bin1b
XM_034312411.1 mRNA upstream 63700 5264912 ~ 5324988 (-) False bin1b
XM_026913351.2 mRNA upstream 63700 5264912 ~ 5324988 (-) True bin1b
XR_003404665.2 other downstream 209451 4813275 ~ 4902011 (-) False obsl1a
XR_003404666.2 other downstream 209451 4821337 ~ 4902011 (-) False obsl1a
XR_004579842.1 other downstream 209451 4821358 ~ 4902011 (-) False obsl1a
XR_003404667.2 other downstream 209451 4821379 ~ 4902011 (-) False obsl1a
XR_004577458.1 other downstream 653015 4458336 ~ 4458447 (-) True LOC117596286
TU26420 other upstream 332912 5534124 ~ 5536007 (-) False romo1
TU26421 other upstream 332912 5534124 ~ 5536060 (-) False romo1
XR_004577391.1 other upstream 872823 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 1278190 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 3061407 8262619 ~ 8265229 (-) False mitfa

Expression Profile