RNA id: XM_026920628.2


Basic Information

Item Value
RNA id XM_026920628.2
length 1986
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC113530515
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15762536 ~ 15775878 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCTGCCCTAGTTACAAGACCCCTCTCCCTCAGTCACACACATTGCTCTCATGCTGCAAACGTGAAACTCTCTTGCTTCATACCGGTCTCTTGAGAGCagtcttgttcttgttcttacATTTGCTTCCACTGAAGATCTTCCAGGTGGCCTTCACCTGATtcgacagttttttttttccaccttccATACGCGCAGCTCCTTGGCGGGTAGAAGTGCTGACCCGCCATGTTTCTGGTTCTGGTGGTAACAGATGAGTTGAGGCAGCTCCTGGCCAGGGCAAGGAACGGGACTGGCCGTCTCATCCAGGTGCTGATCCGAGACGAGCAGTTGGTTCTGGGTGCATACCGTGAGCCATCTCAGTCCTGGGAGAAAGATTATGACCACTTCCTGCTTCCCCTACTTGATCCCCAGGAACCTTGCTACATCCTGTATCGCCTTGACTCCCACAATGCACAGGGATATGAGTGGATCTTTCTTTCTTGGTCACCTGACCAGTCTCCAACCAGACAGAAGATGCTGTATGCTGCCACTCGTGCAACAGTGAAGAAAGAATTTGGTGGAGGGCATGTAAAAGATGAGCTCTTTGGCAATGTGGTGGAGGATGTTTGTCTTCAGGGTTACCTTCGTCATGTATCATCAATCTCCGCTCCTGCTCCTCTCACACTCGCTGAGCAGGAGCTGCAGAGAATCAAAACCACGGAGGTTATTACAGAGATGAGTGTGGAAACTAAGCCTCAGACCTTACAGGGTCTGGCCTTTCCGCTACAGCCAGAGGCTAAACACGCTTTACAGCAACTCGCTAAGAAACACATTAACTACATCCAGCTGAGGTTGGACACTGAGAAAGAGACCATTGAGCTGGTGCACACTCGGCCCACAGAGACACATGATCTTCGTAGCAGGATCCCAACAGACACACCACGCTATCACTTCTTCCTCTATAAGCACTCACACGAAGGAGTCTACCTAGAGTCTGTTGTGTTCATCTACTCGATGCCGGGCTACCGCTGCAGCGTTAAGGAGAGGATGCTGTATTCCAGCTGTAAGAGTCGGCTGCTGGAACAGGTGGAGAGAGACTACCATATAGAGGTGGTCAAAAAGttggAGATAGACAGCGGGGATGAGTTGACGGAGCAGTACTTGTATGAGGAAATCCACCCTAAGCAGCATGCTCACAAGGAGGCATTCGCCAAACCTCGCGGTCCTGCAGggaaaagaggaaataaacGGCTGATTAAAGGAGTGGGAGAGAATGGTGTGAACAGCTAGAGAGGAAAGAACATGGGAAACAGGTCCCTGTTCTGCCCTCCAAGAATCTGAGGATTTTGCTGTGTTAAGGCATGACAGGATGAAAGAGGTTGAAATGTGGTGTCCAgttgtttttattcttattaattgtgatgcttttttttttttaaactttattagcTTGGgtttcataaatcataaataactCATTCTTTTATTCAAATTTGTGTACACAttcataaaggaaaaaaaaaggaaactcaGGAATTCATTCTGTACCTATAAATGGTCTGCtcacactttttattcattcagaaTTCGAGACATAACTTGACAGTCATGTTTCATGCACAAATTCAGTTAGTGTCAGTACTCAAAGTGGACTAGTGGACagttcatatttaaatttttcttgattttatttcacaacaCTACCATACATTACCATTACCAAACATAGCAGATCTAGCCTCAGTAGAATGTGAATTTTGTATGAGTAAGAAACACTTTATAGGTCACTGATGTTCCAGTTGTGATTTTAGATCTGTGTTTTATAACTGATTGGATTGGCGCTAATTTGCTTTACAACATTAGATTGAAAACCTAACTGTTTATGCATAAGCATTTACTTCAGTGACACTAATGTAAATCTTTCTCACTGTTTTCTGTCATATCAAGTTGTGAAAATAGCTGTTCTTAATGAAAATAAGAACtcagaataaattatttttatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33217 lncRNA downstream 37080 15720767 ~ 15725456 (-) True G28191
TU33208 lncRNA downstream 80492 15681570 ~ 15682044 (-) True G28182
TU33196 lncRNA downstream 145788 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 258493 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 284528 15477790 ~ 15478008 (-) True G27935
TU33234 lncRNA upstream 10975 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 153163 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 259955 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 262105 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 346851 16122729 ~ 16122949 (-) True G28278
XM_026929869.2 mRNA downstream 6195 15752213 ~ 15756341 (-) True cish
XM_026919148.2 mRNA downstream 35422 15618351 ~ 15727114 (-) False srgap3
XM_026919138.2 mRNA downstream 35422 15618351 ~ 15727114 (-) True srgap3
XM_034314051.1 mRNA downstream 194108 15505644 ~ 15568428 (-) False rad18
XM_026920652.2 mRNA upstream 2312 15778190 ~ 15784244 (-) True wdr82
XM_026942966.2 mRNA upstream 15690 15791568 ~ 15794776 (-) True cplane2
XM_026931527.2 mRNA upstream 19923 15795801 ~ 15874718 (-) False cadpsb
XM_026931563.2 mRNA upstream 19923 15795801 ~ 15874718 (-) False cadpsb
XM_026931545.2 mRNA upstream 19923 15795801 ~ 15874718 (-) False cadpsb
TU32920 other downstream 293307 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 301535 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 463517 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 886546 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1497077 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1737834 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2173279 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2295109 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2801346 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile