RNA id: XM_026920872.2


Basic Information

Item Value
RNA id XM_026920872.2
length 1907
RNA type mRNA
GC content 0.49
exon number 5
gene id lmo4b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18449257 ~ 18464571 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACACATGTAGAGCAAAAGCGGAGACGGAGCGCTGAGCAGGACAGAGAGCTGGAGAAGACGGAGGAGTGCGAGCCACGCAGACACACCGCCACACCGACACACCGCTTCACGCGAAATGCTCGAGTCGTTCCTGGATCACGTTTAACGACAACACGGACGTTTAATCATCGCCAGAGGAAAGAATCCAAGAATAAAACGTGACGGCACCAGTGGAAATATAATCTGAAAACTCCATTTGgtcctctgtgtttgtgtgcgtgcgtgtgtgcgcgcgctaaggcgcgcgtgtgtgtttgcacagaaAAGCTGCCTGCACCGCACTGGACTTTAAATTCGGACTTTTCTCTCCTCCAGCGCGCGCTCTGAGACTATTAtccttattgttattattattgttattattttgaaaagCCCGCGTTGTAAGATTATCGGAATCCCCGCGACGGAAAGATCTGCGCTTGGTAtctgagagagataaagagcaGAGACCATGGTGAACCCAGGAGGCAGTGCTCAGTCCGCACCAGTTGGAGCTGGTACCATGTCGTGGAAGCGCTGCGCGGGCTGTGGAGGGAAGATCGCCGACCGCTTCCTCCTCTACGCCATGGACAGCTACTGGCACAGCCGCTGCCTCAAATGCTCGTGCTGCCAAGCCCAGCTAGGAGAGATCGGCACCTCCTGCTACACCAAGAGCGGCATGATCCTGTGCAGAAATGACTACATCAGgttattCGGGAACAGCGGGGCATGCAGTGCCTGTGGCCAGTCCATTCCAGCCAGTGAACTGGTCATGAGGGCACAGGGCAATGTGTACCACCTCAAGTGTTTCACGTGTTCTACCTGCCGGAACCGGCTGGTCCCTGGAGACCGGTTCCACTACATCAACGGCAGCTTGTTCTGCGAACACGATAGACCCACAGCGCTCATGAACGGCCACTTGAGTTCACTGCAGACGAACCCACTACTTCCTGATCAGAAGgTGTGTTAGGAGGAAGGAGTTGCTCAAAGCGGGATGTGTGCCTTCATTCCAGCCCTCGCTCATTGTCACTGAAGATCTCTCAGTCCTGACCTGACCGCCGCCCCCACCCTCCTTTCCTATTCACTTCTGGAGTCGCAGCACTACCCCAGCTTCCCCTTTTGATATCCCAGAATTCCTCTCTACACCTCCCCCCCCTGACCTGACCCCTGATCATAGGCGGATTCCCGGCGTTGCGGCGCTTCCAATGGAAATTTGAGGACTCCATGACTTACAGGAGACTGATCAGACCCTGTGGGACtcaaagacagtgagagagagaaagaaagagagagggaggcagagagagtgaaaagagagaactAAACCAAGCAGAAGGACATTTTggataagagaaagaaagagaaaaggagagtgTCAGACAAATGAAGCTAATCAGCTGCAGCTTTTCGAATCGCAGTTCTTACATTTGTTTGATAATTAACAGGGGCAAAACAGactgctttttttcctttttacttctttttttctccttactTCCTTATctattctctttttcttcaaCACTCTATCTCTGCtttctatattttaaatgttgtaaaGGGAATGTGTTTCGTTTTTCGGGTGATTCAAGAATCAAAAAGACTGGGTATCCGTGGCTTTTTTGTGCAAATCGAATCATGAACACTCTTGGTGTATTTGTAAAACTATCACATATGTatgcatgtaaatgtttttgtccCAACGTGGCTACCGTACATCCTCCACGTGACCCCGCCCCTTCCTACCGGAACctgaaaccatggcaacaaaGCTCATAGCTGTCCACTTGTAAAtgctgaatgagagagaaatctatttgtgatattttcagAGACATTGGCTCCAGTATGgtgtatttaattaataaaaatttaagatttaaaagCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34596 lncRNA downstream 300508 18148228 ~ 18148749 (-) False zgc:153916
TU34503 lncRNA downstream 606437 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 606437 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 734892 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 811240 17637327 ~ 17638017 (-) True G29213
TU34829 lncRNA upstream 149786 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 150298 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 169507 18634078 ~ 18634357 (-) True G29551
XR_004579394.1 lncRNA upstream 329454 18794025 ~ 18816812 (-) True LOC113537624
XR_004579395.1 lncRNA upstream 329454 18794025 ~ 18807890 (-) False LOC113537624
XM_026917991.2 mRNA downstream 253629 18148285 ~ 18195628 (-) True zgc:153916
XM_026927028.2 mRNA downstream 322345 18116405 ~ 18126912 (-) True lrrc8c
XM_026927035.2 mRNA downstream 322346 18116405 ~ 18126911 (-) False lrrc8c
XM_026920125.2 mRNA downstream 346730 18094167 ~ 18102527 (-) False lrrc8db
XM_026916382.2 mRNA upstream 36967 18501538 ~ 18585762 (-) True hs2st1b
XM_026916472.2 mRNA upstream 38346 18502917 ~ 18586226 (-) False hs2st1b
XM_026927315.2 mRNA upstream 151406 18615977 ~ 18623608 (-) True LOC113534471
XM_026912723.2 mRNA upstream 224027 18688598 ~ 18691082 (-) True sox14
XM_034312132.1 mRNA upstream 355486 18820057 ~ 18835789 (-) True hdlbpa
TU34546 other downstream 376348 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 499539 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 919942 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 1169084 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2980028 15461950 ~ 15469229 (-) False oxtr
trnae-cuc_6 other upstream 112653 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 329461 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 351688 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 352556 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 915870 19380441 ~ 19380512 (-) True trnap-ugg_1

Expression Profile