RNA id: XM_026921212.2


Basic Information

Item Value
RNA id XM_026921212.2
length 2881
RNA type mRNA
GC content 0.46
exon number 6
gene id dipk1ab
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20112945 ~ 20142257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAGAGCAGGTCAGTGTGACATGTTTGCTCAGTGGCTGGGCAGGACCACATGCTCTGGGCTGCTTTTACAGCTCAGTTTTTTTTGGTGAAGCTCGGCTGAGAGTATTCAGCCTCATCTAGCGGTaaaatgtgaaacacacacacacacacggtgtttCCGCGGCGTGAGGGACTCCAGTTCAGTTAGTATTGTGAGATGAGCTGTTTAAGTCATGGCGAGGAATGTGATTCCGTGGATTTGGCTGAGGAAGCCCATCTACATACAGGCTCGGTTCTCCTACTTGCACATGAAGTACCTGTTCTTTTCCTGGTTGGCCGTGTTTGTAGGAAGCTGGGTGGTGTATGTCGAGTACTCCTCCTATACAGAGCTGTGCCGTGGACATGAGTGCAAAAACACTATTtgtgaTAAGTTCCAGAAGGGGGTGATCGATGGTACAGCTTGCAGCAGCTTATGTGAGAAGGAGACACTGTATTTTGGGAAATGTCTGTCTGCCAAACCCAGTAACCAGGTGTATTCTGGTAGCTGGGGAGATTTGGAGGGTATCATTAAGTGCCACATGGAGGACGTTCCTCACTATGACCTGGAGGCAGAGCTGGAACCACGGAGAGAATCGGCAGCCTTTAATAGGCCCACTAAAGGCACATCTGTGGAGAAGTTCAGAGAGATGGTCCTGAGCCATCTAAAGGCGAAGGTGGGCGATCAGGCCAACCTGCATGACTTGGTGGGGCTCGTGCTCGGCGTGGCTGATGCCAACAAAGATGGCGAGATATCTCTGGCAGAGGCACGCTCAGCCTGGGCTCTGCTGCAGCTGAACGAGTTTTTGATGGCGGTGGTTCTGCAGGGGCGGGAACACACTCCAAGGCTGCTGGGCTTCTGCGGAGACTTGTATGTAGTGGAGAAGGTGCCGTACGCACCACTCTATGGCCTCAGCCTGCCCTGGGCCGTGGAGTTATGGCTTCCATCAGGCCTACGCAGGAGTGTGGATCAGTGGGTGGCACCATCATGGCCTCGCAAGGCCAAAATTGCAATCGGCCTCTTAGAACTGGTGGAAGACATCTTCCATGGGCCATTTGGCAGCTTCCTTATGTGTGAAGTGAATGCAGCATGCTTCGGCTACACCGAGCGCCATGACTTGAAGGTGCTGGATGCCAGGCGCATCGTTCCTGAAACTGCTTTCCAGAAAGTGATGCGCGAGCGGCGGTGTGAAGTTGACACTGACTGTCTATATGGAGTAGATTGCCACACCACCTGTGACCTCACGAAGCACCGCTGCACCACTGAGGTGACGCAGCCGAACCTGGCTAAAGTGTGTGGTGCACTGAAGGACTATCTGCTCCATGGAGCACCGCCAGACGTGAAGGAAGAGTTAGAAAAGCAGCTGTATGCATGCATGGCCCTGAGAGGAGCCACTGAGCAAATGGAGATGGAACACTCGCTCATCCTGAACAACCTGAAGACACTGCTGTGGAAGAAGATTTCGCACACAAAGGACTCCAAGTGAAAACTGAGTAACTGTAGTTGTCTGGACAGGAATCAAACTACAACAGTGTTTAATCCTTAATAGAGCCTTCTAATCtaaatttttgttaaattaagcTACTCTGGGCTCCCAAGCAAGGCATCATGATGGTGCAGCAGGTatcattgccacctcacagctctagggtcaCCAGGTTGATCCTGAAGTCAAGTTCCTCTCTGTGCAGAGTTCTCCCTGGGCCCACGTGGCTTTCCTCTGGCTTCCTCCTACCTCCAAAAATCTTGCCgctaggtggattggctatgctaaattggcATActtgtgaatgagtatgtgaatggtgccctgctATGGAACAGCATCCCTTTCCCataaagcacttactaaagatgaattgAATAACCTCCCAAGTGGCACAATTATCTCAAGTGACATAATTATCTATGGTGTCACCCTATCATCAACAGATTGCTgatcaaatcctgatgatgccacagctattCATGGCCAGACCACCATAACTGGTCAcactctctgggtgggaaggtCTGTACACTAAATCCATGTTGTTGCATAAGCAGCACTTGGAAAAGATATCAGTGGCTGTCTTCTTGTGTCATATGAAACGTGCATTAGCTTTCATTATCCAGTAAGGGAGACCTAGTGAGCAGCTGGAAATTAGATATGACTAATGTGAGAAAATTggttttaaaaagcagcagtAAGCGTGATAACGATACACAGTTGGAGCAAACGTACAATTCCGAACTCTTACCTATATACCTTGCTATAGAAGGCACACTACAGGTCCAGCactagagaaaataaaaacagcagacatCCTGCCAGTGCTGGCAGAGGACTAAACTGCCACTGAATCTATCAAACTGCAACTTCCCAGTTTCTGTACTATATGGGGGGGTGAAATATTTTTGGATAATCTATAAGAAAGCTTGTTCTAATAGCTTTAGTCTATAATTTATTCCAAATGTAATTTTGTAGAGAGACAAAGTTGCTGTATAAATCATTTCCAGCGGCAGTCCCACTTGGCTATATGTAGAAAGCAGACtcaaatgctattttttttttttttttttaactcggTAAATATGAGGCATGTTATAATTATGTACGTTAGAAGCATGTGATCATTTGCAGAACTTGTAGCATATTTGTATGAATGTGGTTCTGATTTTAGTTGGAAAGATGAGATTACTATCAGACAGAAATCAAGCTGGGGGGATTAATACTTTTGTCTTAAAGCCTTACCGGTTGATATTTTTAATCAGGAGTAATTGCATACATCACTGCCcataaattaaatacagaacACTGTGTACTTccaaaaaatgtgtttgaagaAGCATATATTTGTCCATAAATAAAGACTATAAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35799 lncRNA downstream 427 20104252 ~ 20112518 (-) True G30320
TU35741 lncRNA downstream 98940 20012425 ~ 20014005 (-) False glmnb
TU35735 lncRNA downstream 127026 19984675 ~ 19985919 (-) True G30270
TU35712 lncRNA downstream 188966 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 198994 19913653 ~ 19913951 (-) True G30246
XR_004579569.1 lncRNA upstream 54963 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 57276 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 104348 20246605 ~ 20246871 (-) True G30421
TU35911 lncRNA upstream 104854 20247111 ~ 20247337 (-) True G30422
TU35912 lncRNA upstream 105909 20248166 ~ 20248509 (-) True G30423
XM_034313310.1 mRNA downstream 11747 20039757 ~ 20101198 (-) False evi5b
XM_026921238.2 mRNA downstream 11783 20038950 ~ 20101162 (-) True evi5b
XM_034313306.1 mRNA downstream 11785 20039653 ~ 20101160 (-) False evi5b
XM_026921246.2 mRNA downstream 13529 20039653 ~ 20099416 (-) False evi5b
XM_026921252.2 mRNA downstream 24294 20039653 ~ 20088651 (-) False evi5b
XM_026921732.2 mRNA upstream 4128 20146385 ~ 20156159 (-) True zbtb11
XM_026923691.2 mRNA upstream 29871 20172128 ~ 20183294 (-) True dpt
XM_034311036.1 mRNA upstream 65498 20207755 ~ 20246008 (-) False nme7
XM_026923896.2 mRNA upstream 65498 20207755 ~ 20246008 (-) False nme7
XM_026923886.2 mRNA upstream 65498 20207755 ~ 20246008 (-) False nme7
trnap-cgg_1 other downstream 726432 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 732433 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1295747 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1296615 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1306195 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1321604 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1321604 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1321604 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1321604 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1321604 21463861 ~ 21531428 (-) False raver2

Expression Profile