RNA id: XM_026921445.2


Basic Information

Item Value
RNA id XM_026921445.2
length 7168
RNA type mRNA
GC content 0.44
exon number 27
gene id lrrc7
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20683547 ~ 20814820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAAGAAGGTGGAGAAGAAGACTTCACCGCTTCGTGCGCTCTGGATAGTGTGGatataaatagctaaatatgGCTGAGGATGGAATTAGACAGGATGAAGAGATCAGAATAAACCGATAAACACGCCTGTATcgttaatattattatgataacgatgattttttttttttaatagaatagCCTATTTGCTGCGTGAGAAGGAGCAACTAAACTGAACATGAGATTAAAATCTTCTACAGGGGATGAGAAGGCACGAGTTGGTTTTATTCCTGACAGTAAGATGCGCATGTGATGATCGGGCTTCGTTGCGGATGATGTGGAGAGTGGTGCtgtattagagagagagagagagagagagagagagagaatgtgctgTGATGCTCCGTGATCCTCctactcttctcttctcaaCACCTGGATTACGagcggaataaaacacagcttaGTGAATTAATCCAATGGACAATTACTCGACGATTCAGTTGCAGTGTCTGGAGATGACTACCAAGAGGAAGATCATCGGGCGCCTGGTGCCATGCCGATGCTTCCGCGGGGAGGAGGAGGTCATCTCCGTGCTGGATTACTCACACTGCAGCCTGCAGCAGGTGCCCAAGGAGATCTTCAGCTTCGAGCGCACTCTGGAGGAGCTCTACCTAGATGCTAACCAAATTGAAGAGCTTCCCAAGcAACTCTTTAACTGTCAAGCCCTGCGAAAATTGAGTATTCCTGATAACGACCTTTCAAACCTGCCAACCACCATCGCTAGCCTTGTAAACCTGAAGGAATTAGATATAAGTAAAAACGGCATTCAAGAATTTCCTGACAATATCAAGTGCTGTAAATGTTTATCAGTTGTAGAGGCCAGTGTAAATCCCATAACCAAACTCCCAGATGGCTTCACTCAGCTCCTCAATCTGACACAGCTCTTCTTAAATGATGCCTTCCTCGAGTACCTACCCGCCAATTTTGGAAGATTGTCCAAATTACGCATCCTGGAACTTCGAGAGAATCACTTGAAAACGATGCCAAAGTCAATTCACAGGCTGTCACAGCTGGAGCGATTAGACTTGGGAAGCAATGAATTCACTGAGCTGCCAGAAGTTCTGGAGCAGATTCATAACCTAAAAGAGCTGTGGCTGGACAACAATTCATTACAGACAATACCAGGGTCTATAGGGAAACTGCGGCAGTTGCGCTATCTTGACCTGGCCAAGAACAGGATCGAGAGTCTTGATGCAGACATCTCTGGGTGTGAGTCTCTTGAGGACCTCCTGCTCTCGTCTAACATGCTGCAGCAGTTGCCTGATACGATAGGAATGTTGAAAAAgttaacaacattaaaagttGATGACAACCAGCTCACCTCACTGCCTAACACCATCGGAAGTCCACGCGCCAAATTAGGttTATCGCTCTTAGAGGAGTTTGACTGTAGCTGTAATGAACTGGAGTCTTTGCCCCCGACTATTGGCTACCTGCACAATCTCCGGACCTTTGCGGCCGATGAGAACTTCCTGACGGAGTTGCCCAGAGAGATTGGAAACTGCAAGAATGTCACGGTTATGTCCTTGCGCTCCAATAAGCTGGAATTTCTGCCTGATGAAATCGGACAGATGACGAAGCTGCGTGTTCTCAATCTCAGTGACAATAGGTTGAAGAATCTTCCCTACACTTTCACTAAACTGAAAGATTTGGCTGCACTCTGGCTATCTGACAATCAGTCCAAAGCCCTTATCCCCCTGCAAACAGAGGCTCATCCTGAGACCAAACAGAGGGTGCTTACAAACTACATGTTTCCCCAGCAACCACGGCACGATGAAGATTACCAGTCAGACAGCGACAGCTTCAACCCCGCTCTCTGGGAGGAACAGAGGCAGCAGAGGATGACTGTGGCATTTGACTTTGAGGacaagaaagaggaggaggacaaCTCTGCAAAAGTCAAGGTTGAGATTAATCTGAAACGATATCCCACCCCCTACCCAGAGGACCTGAAGAACATGGTGAAATCAGTGCAGAACATGGTGGGGAAAACCACCCACCCTCTTAGCACAGAGAAATGTTCCTCAGGCACCAACATGGAGCTCCATAGCACAGACGCATACGAGCCCAAGTGGCCCATTGCACCCAAGGAGGTGACCGAGAGGGAGGTTAAAGAATTCTCCAAGCCTCCTCTGCCAGAGCAAGGTGTCATCCTGAACTCGGCAATCGACATCCCAAAGCGGAAGGACAAGGAGGATCTAAATGAGAGCTCTGAGGATTCCATGGGAGGTTCACCTAATGATATCCGGATTTCTGACATGAGGCCGACTCTGGTGGAACCCCCTATGTACAAGCCAAAGGTTGTATTGCTGGGAAAAGATAAAAAAGAATCCATCGATGACTCAGACCCAGACAAAATGCACTGCTTGAACAACAGTGGATCATCAGCCACCTACTCAGACTACTCCCCCTCGCAGGGCTCTTCTGGGTCCTCCAACCCTCCTGGCAATGTCAGCTCCATGCAGAGTGCTGCCAAAGAGGGTCCATCACAGACCCACTGGACTAACAGACTTGCTCAGTCTTTCCCAAAGCCCATAGAGACAAAGCCTCTGCTCAGCCACAGAGAGACACCCCCCTCCAGTACCCTGCAGCAGCGGGGTGAGAGACGGCCACTCAGTGACACCTTCGACAGCTGGAATGATGCCCCCCACTATGACAATACAGGGTTTGTAGCAGAGGAGACGCCAGTTGAGACTCCCAGCGGCAGTAGTGGAAACCCCATGCTAGGCACAAAGCCTCGTAGTGCCTCAACAGCACATGGGCGACGGCCTCTCATGAGACAGGATCGCATCATGGGGGTCCCATTAGAGCTGGAGCAGACACCACACTCTTTCCGTACAACTCCTGATGCTGAAGTgcctcctccccctcccccaAACCCCTGGCAGAACTGGACGAGGACTCCCAGCCCATTTGAGGACCGTACAGCTTTCCCTTCCAAACTGGAAATTACCCCAGCAAATAGCCCCAACCCTGACCGCAAAGACTTTGAGCAGGAGATGGGTGAACTACCTGGCACTTTCCCCTCTTCAGGAGCCTGGGGATTCCTGGACTCCAGAGACTCAGGGACAGGGCAAGGTCAGCCTGATGTCTTTGCACATGTTCAAGGACGTAATGAACAAAATAAGGGCAACACCATGGTCATAAGCAAGAGCTCTGAGAGACTTTCGCCAATGATGAAGGAGGTAAAGTCGAAATTTAAGAAGTCCCAGAGCATAGATGAAATTGATATTGGATCATACAAGGTGTACAGTATTCCCTTGGACAACTACAGCTCTAGCATAGAGAATCAGGGTAGCGTGGACAGAGCTGACCTCCCAGGACCTCTCGAACAGAGCATGTCCAGGAGCCAGTCTGCTCCCATGCTGGATGATGATCTTGACAGCTTTGGCACGAATAAATCTTCTCAGCAGCAGAAACCTGCTATCCCAAAAAAGGTTTATCAGTTTGACCAAAGTTTTAACCCTCAAGGGGCCATGGATGTGATGAAAGCAGAACGGAGGGTCCCTCCACCATTTCCCAATACCCCTGAATATGTGAATCAACCAGGCAAGACACTGCCAAAGGAGCTTATTAGCCCTCGAGGCTACCGGGGCTATCAACCAATGGAGCAAATGTTCTCCTTCTCTCAGCCACCTGTCAATGATGATGCAGTTCCTCAACAGTTTCCTGCCCAGCCTCAACGGTCCCGTCCAGGTTTCCTGCGGCGGGCAGATTCCCTGGTAAGTTCTACAGAGATGGCACTGTTCCGCAGGGTAGCAGAAGCCCAGGAGCACCAAATGGCAGAGCATTACAACAGACCCCAACAGATTAAAGCCATGATGGATGCACAGAATAGCTTGTCTACCATGGCTGATTCCCAGTTCCATAAGAGGAATGGTAGGTATGAAGAGGAATACTCATCTTATCAAGAACCTAAAAAGCCTATTATGGGATACCCCACAAAGAGTCTGACACAGCGTCGCCCACTGTCTGCACGGAGCTACAGTACAGAGACTTATGGGGCATCGCAAGCTCGGCCAGTGTCTGCGCGCCCCACCATGGCTGCCCTGCTAGAGAAATTGCCTTCAGATTATAATATTAGTACATGCACTGAGAAGAGCCCTGACACTGACATGAAGATGAGGCCTGTTCCACAGAAACCAGAGGACATGACCTCCAAAATGCCAGTGGACTGGAGACAACAGCTTCTAAGGCACATAGAGGCAAAACGGCTAGACCGGAGCGCTGTCCTTAAGCACAACACAGTAAACTTCGGCATGCTGTACTCTGGAGGCTATGCTGCACCGCATGCCAGCAGAAGCATGACAATAAACTTTTACAATAACACAAAGCATGAAAACCAAACAACTCAGTGGCTACCTCTACCAAATACTCCATCACAACAGAGCAATATTTTAGATAATGGTCAAGAGGTGGTCTCTCCCACCACACAGTGGGCCCCCTACTCTTTAGGACGAAGAGATGTACCTCCTgacaacaccatcatcaaaaaGGCCGTGGTCCATCATTCTCACCAACAGCAGGGCATCATGGGAAGTGGAGCCACGGCACCACACCGAGGACCACAGCAGTATGAGGGAGCCACGAATAAGGTGTCCATCCAGCAGTACCAATCACCTCTGGCCATGGCCATGACAAGCACCAGCCCCCGACCACAGAGCGCCCGCTGCTTCATCCAGACTAAAGGCCAGAAAAGCATGGACGGCTTTCCAGAGCAGTTCTGTGTTCGGATTGAGAAAAACCCAGGCCTCGGTTTCAGTATCTCAGGGGGAATCAGTGGGCAGGGGAACCCCTTCAAACCCTCAGACATGGGTATCTTTGTTACTAGGGTACAGCCTGATGGACCCGCCTCCAATGTTCTTCGACCAGGGGACAAAATTCTGAAGGCCAACGGACATAGTTTTTTACACATCGAACACCAAACGGCAGTGTCTCTTCTGAAGAGTTTCCCGAAAGCTGTGGACTTGGTCATTTTAAGGGAGAGcacaatgtaaataattttataatgctGACTTCTTGCTCAAAAGGAACACAGGACCTTGTACATCAAGTTTTTATCTAGGAACAATTTTGCCAATTGCTGGACCAATGGCAAATACTAGTGCCAAATGTACTATAGAGAACATATCGAATAATGTGACATATGGCTTACacgtatatatatctatatatatatatatgtgtgtgtgtgttaaaatcttACACTAATGTGAAATTACTTTCTATCTCTCAGCCTGTGGCTGTAGGTTGGTGTGTTTTTTCGTTGCTTATTTATATCGCCTATTATTTTGTACCTATTTTTCCAAGcgacttttcatttcatttcaatctCAGCGCATGAAAGCACATCTGCTTTTGAAgacattttattcatcataacactgcctcaaCTCTGTAAATGCCTTGTGTAAATATACATAACATTACAGAAGATAGTTTATCCTGCTGACCCTTAacttcattttaatcatttaagcaGACATCTACTACCACTGTAGGTTTGGTTTATGGATTATGTGTGGCTCATATATAGAGTTTTGcacaaatcaaatgaaaaatcCAAAAGCAATATTGTTGCTATTTGGCTTTTCTTGCAGCACCCTCTGCTGGTCAGCAAACAgcttcttaataataataataataataataataataataatagtgagcGAGACCTTTGCTTTAGGTTCATACAGGGTGAAACCCCCTATTTCATTTTTCGCCATGTTGTCAACATGAGCATTTTCCTAGTTTAATTAtgattcatattatttttaaatccatatgTACTCAGTATCCACCAGGTACAAAAATGTCAAAGTCAGTTTTTAGTGTGTACATTTAAGTTGTACAAAGGGTTTTACACCCAAGGCTTAGTTGATGTTCTGCTTTAAGGCCTGTTAATCACTTactgatataaataaattaattcacaTCATTATGTGATAGATTTCCATAAGAAGCTTTAATGTTTATAGCatgctttcactttttaaagctGTCTTATTAGGAAAGAGGTGAGGgggctttgtgttttttaaattaaacatttagttGCTTTACTTCACTAGaagtattttttatgtaaaaacatTGAAGGCTCATCATCATTGTACTTTACAGATAGATCTGCCCTGCCCATGTCCAATATTGTACATAAATGTAGCATTAGAAAAACCCCAATcatattttacttctttttttttacatttcaattttatttgaaatataattatacaaCCTGAAGTCTGGATAAAAACTGATAAAATGCTATTGGGACAAAGCATTTgataatgtgattatttttaccAAATGTTTtgagtaattatttataatatattgaCATACTTAGCTTTGCTCAaattgtgaggtttttttttatataaagataCAAAAAGCAGTACAGAAAAGAGTATTTAGATGATGAGAGAACACTTAAACGAATCAAACTTAAAACTATTTCTACAGTAATTGTGAATTTGTGTCAAACATGTATATGGATATACAAATGGtcatttttgtatgtgttttaaaTCCTATTGAATATAAATGCTAATATATGGTACTATTCAGTCTAATTGCAGTATTGATGTACATAACTGTGaatgaaatcatttaaattaatttattcctATAAATTGTGAATGTACTCAAAGCTTTCTGCAGTATGAAGACTTACTGGACTTGAATGCTGTTTCATTTTTTGTGCAAAAAGTAATTATATATAGAATAATACAATTATTCCATTTAGTTAAACAGATTTAGTGACAATTTATCATGCAGTTTATTTGCACACGCAAGTTTACTCCTtcctatttttttctgaattaaaaCAATGTAATTGATGAAATATATATTCTGTGTCTAGAATGCATTTTGCAGATGctatatgtacatatttaaaataaattttaataataaaaaccaaaacagaaaaaaaaaaattcaaagctGTGCAGCAAATAACGGAGCCATTTTCGGCTTTGGGAGTACAGATTTTTTCAGTATCTAAGCGGTGTTTTGAATAATGTATGAAAGTCTTTATTGTACAAATAAAAAGTCACTATTGTTACTATCTGTCATTCTGTTTCCTTTTGAGACAGTACAACTGAAATTAAAACGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36467 lncRNA downstream 26164 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 27027 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 134910 20512732 ~ 20548637 (-) False G30879
TU36444 lncRNA downstream 149426 20512732 ~ 20534121 (-) True G30879
TU36443 lncRNA downstream 166689 20509191 ~ 20516858 (-) False G30879
TU36669 lncRNA upstream 189761 20960172 ~ 20960391 (-) True G31070
TU36702 lncRNA upstream 292483 21062894 ~ 21065738 (-) True G31094
TU36880 lncRNA upstream 510953 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 613998 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 619066 21389477 ~ 21412173 (-) True G31454
XM_026917435.2 mRNA downstream 254222 20359722 ~ 20429325 (-) False pex5la
XM_026917418.2 mRNA downstream 254222 20359722 ~ 20429325 (-) False pex5la
XM_026917428.2 mRNA downstream 254222 20359722 ~ 20429325 (-) False pex5la
XM_026917411.2 mRNA downstream 254222 20359722 ~ 20429325 (-) True pex5la
XM_026927143.2 mRNA downstream 355088 20324858 ~ 20328459 (-) True mrpl47
XM_026935299.2 mRNA upstream 114114 20884525 ~ 20886833 (-) True zgc:153311
XM_026928304.2 mRNA upstream 192978 20963389 ~ 20978637 (-) True lurap1
XM_026918081.2 mRNA upstream 219274 20989685 ~ 20994441 (-) True ttc4
XM_026918070.2 mRNA upstream 225677 20996088 ~ 20999389 (-) True pars2
XM_026918061.2 mRNA upstream 225677 20996088 ~ 20999388 (-) False pars2
trnap-cgg_1 other downstream 1297034 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1303035 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1866349 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1867217 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1876797 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 693450 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 693450 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 693450 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 693450 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 693450 21463861 ~ 21531428 (-) False raver2

Expression Profile