RNA id: XM_026921551.2


Basic Information

Item Value
RNA id XM_026921551.2
length 2667
RNA type mRNA
GC content 0.39
exon number 8
gene id mitfa
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 8260485 ~ 8265229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CaaattttcttcctctctcttttatattttcattgttgtaTCTTTGAGTGCATTGAATGCAGCCGGTCCAGAAGCCTGAACGCGCCTGACTTCCTTTATTTGGTCACTATAACCTGGCTGAGTGCACGAACTGACTACTTACTGAGGTCTCTGTGTTGATCTGTTGCGCATAACAATATGTTGGACATGCTTGAGTACAGTCATTACCAGGTACAGACTCATTTGGAGAGCCCTAATAAGTACCACCTCCAGCAGAGTCCAAGGCAGCAGGTGAAGCACTATCTGCCCAGCACGCTTGGGGCTAAGCTCAGCCCTCCGTTAAACAGCCAGAATCCGGAGCACGGCATGCCCCCCGGCCCCGGAGCCAGCGCCCCCAACAGCCCCATGGCCCTGCTCACCCTCAGCAACAACTGCGAGAAAGAGATGGACGACGTAATTGAAGACATTATCAGTTTGGAGTCAAGCTATAATGATGATATCCTTGGATTAATGGACGCAGGACTTCAAATACCAAATACAATCCCAGTTTCTGCAAATCTCTTGGACATCTATAGTAATCATACACTTCCTCCAGCTGGAGTCACCATTGGGAATTCCTGCCCATCTAGTTTACCCAATGTGAAAAGGGAATTCTCAGaagcaGAAGTCAGAGCTTTGGCAAAAGAGAGGCAAAAGAAGGACAACCACAACCTAAttGAACGGAGACGGCGCTTTAACATAAATGACAGAATTAAAGAACTTGGGACGTTAATTCCCAAATCTAATGATCCAGATATGAGGTGGAATAAAGGAACTATTCTGAAGGCCTCAGTGGACTACATCAGGAAACtacagagagagcagcagagagCAAAAGAGCTGGAGAGCAGGCAGAAGAGACTCGAGCACACCAACAGACACCTCCTGCTTCGCATTCAGGAGCTGGAGATGCAGGCTCGTGCTCATGGCCTGGCTGTAGGAGGCTCCTCAACGCTCTGCTCCACTGAGTTGGTGGCTTGCGCCATCAAGGAAGAACCCATCAGCTACACAAGCTGCTCATCCGAGCTGTACACTCGTCCACACCTCCCCAGCCCGGATCATTCTCGGCCCACCACTCTGGACCTCAACAATGGCACCATTAGCTACAGTGACAGCACCACCGAGGAAGCAGAGGCAGGGCTTTATGCAAGCCGCAAAGAACCCACAACCAAGCTAGACGACATGTTTCTGGAGAACACACTGTCACCAGTGGGCACCAGTAACCTGCTGCTCTCCTCAGGTTCTCCCACACACTCCAATGACAGCAGCAGACGAAGCAGCACGAGCACAGAGGAGCAGGACAAGGGCTGTTAGCACTGCTAATGAACTTTTAATAACTCTTTATGACTGTTTTTGTTTAGGATTGTTTTCGTTGTTGGGTTGATTACAGTAGTAGTGTATTCAAAGATGTTTCTGTGCACTGCTAAAGATATGCAAGGATTTGGAACACCACTGGGATTTTTGGGATCTTTTGAAATGTGATTTGTTTCCAGTACATTAATTCTGTTACATCTAGTGTAACAGATGTGATTCCATTTTGCCCATGATTTttgatatatattatttatattaaaaaaaaaaaaagacaagagaaACATTAGTTATGTCATGATGCCTCATCCTAGTTTATACttgcattatactgtatattattagcATATCTGTAATCTGTCatttaatcagaagtaaaatgaGATAATTCTGAAGTTATTGCTTTTAGTGCCATTATAACTGCCAAAGTTTAAAGTTCTCACAAAATTTCTTTGGTgtaaattctaataataataataataataataataataataataataataataataataataccccTTTACTCAGATTTGGTGTTAAATTtgaattatatactgtatttatggtAAATTAAGATTCTTAGTACCAAATTTCACAAAAATTAGTAACTCCTAAAGGATATAGATGATAACTATAgactaacaataataaatagGTTAAGAGTTAACAGGGTTTTCTTCAATCTGTAGTGTATCATTTAATTATCCACCAGAATATATAcgtaatttctttttttcaattagTCATCAGAAAGAACATAAATAAGTACATTATAAACTGAAAATGGACAGAAATAATGGTTATTCAAATTTAGTTATCCATATAGTTATACAGTATTCACTATATTGTATTCTCTATGTGCTTtttctaatatattttattagaaaagTGGAAAGTTCACCTTCTGATTACTCCCTATGGTATATTTGTTTACATGGTAAATATATAAGTTTGGAATTTGAAGTATTTGCtcattattaatgtattcaGTATTAACTtgttatatgattttatatactgtaactACAGAATATTTGTTTTCTCAATTTCTTGGCAGTACACGCTTAGAAAAAAGCGGTTCTTTGAATATGAAAAAATTCTTAGCTTCTTAAAATGGGTTTATTTTGGAACCGTTCCTGATcgggaaacactctgttgtaggtttctacttagaacctttaagggttccctcaCAAGCACAACCagagaacccttaagggttctattTGACCCTTTTCTAATAGtgttatatagatatatagtaGGATATATAGATATGAATCATTAGTTCACAACTGAGAGACCTTGAATGAAGTGCCTTTAACTGAAGaaata

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005654 nucleoplasm cellular_component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27867 lncRNA downstream 170867 8087767 ~ 8089618 (-) True G23499
TU27782 lncRNA downstream 331769 7927107 ~ 7928716 (-) True G23422
TU27784 lncRNA downstream 335054 7925165 ~ 7925431 (-) True G23424
TU27788 lncRNA downstream 343893 7915609 ~ 7916592 (-) True G23428
TU27787 lncRNA downstream 345691 7913696 ~ 7914794 (-) True G23427
TU27989 lncRNA upstream 78396 8343625 ~ 8351694 (-) False arl6ip5a
TU27998 lncRNA upstream 99071 8364300 ~ 8365123 (-) True G23605
TU28003 lncRNA upstream 152145 8417374 ~ 8417993 (-) True G23610
TU28008 lncRNA upstream 161892 8427121 ~ 8427325 (-) True G23615
TU28010 lncRNA upstream 164552 8429781 ~ 8430093 (-) True G23617
XM_026923857.2 mRNA downstream 266862 7991214 ~ 7993623 (-) True gpr27
XM_026929753.2 mRNA downstream 438427 7788563 ~ 7822058 (-) True gxylt2
XM_026925761.2 mRNA downstream 474036 7778190 ~ 7786449 (-) True ppp4r2b
XM_034298664.1 mRNA downstream 474270 7778190 ~ 7786215 (-) False ppp4r2b
XM_026914975.2 mRNA downstream 889968 7282007 ~ 7370517 (-) False chl1b
XM_026920277.2 mRNA upstream 78395 8343624 ~ 8351633 (-) True arl6ip5a
XM_026921828.2 mRNA upstream 215820 8481049 ~ 8484147 (-) False tcta
XM_026912993.2 mRNA upstream 304118 8569347 ~ 8574762 (-) True gnat1
XM_034312653.1 mRNA upstream 304118 8569347 ~ 8572830 (-) False gnat1
XM_026937315.2 mRNA upstream 584753 8849982 ~ 8853110 (-) True inka1b
TU26888 other downstream 1780474 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 2183608 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 2724425 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 2724478 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 3059273 5111463 ~ 5201212 (-) False LOC113530384
TU28034 other upstream 215822 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 215822 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 215822 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 1170334 9435563 ~ 9441810 (-) False tusc2a
TU28828 other upstream 1450298 9715527 ~ 9718970 (-) False tnnt2b

Expression Profile