RNA id: XM_026921732.2


Basic Information

Item Value
RNA id XM_026921732.2
length 3995
RNA type mRNA
GC content 0.52
exon number 10
gene id zbtb11
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20146385 ~ 20156159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAACATCCGGTTGTGCAGCAGCCATTTTGTCTGGTCGTGCAAGTCCGCCCCAACACGGTCACGAACAGCAGTTCCCacttgtaaaatattaaaaaacatcGCTCTCTAAATTTCACTTGGGCATAGAAACAGGTTAAGGAAACTCTCTTGTGAATTTTAGGAGGAGAAGCGCTCGCTGGTTTTGGGCTTTATGAAGGTTTATTTATGTCGTGTGTGAGTGCCGCCAGTCGTGTGTTATGTCGAGCGAGGAGAGCTACTTAGCCATCCAGCGCTATTTAACGGACGAGCGCGAGCCCTACGCACCCGGAACTCACGGCAACGTCAAGAGGAAAATCCGCAAAGCAGCCGCTTGCTACGTCGTGCGGGACGGAGTGCTGTTCTACCAGCGGCGGCACCGGGGCCAGGAAGGCTTCACCGAGCTGGAAGTGGTGCTTCAGGCCGAGCGGCGGAAGGAACTAATCGACGAGGCGCACATCTCCAGAGGGGAGCATCTCAATCAGCAGCTCACCTGGGAGAGCCTTTCTCAAAAATACTGGTGGAGAGGAATCCTAAAGCAGGTAAAGGATTACATCAGGGACTGTGGGTGCCAGCAGAAGTCGGAGCGTGGGAAAGGCAGTGCTGAGGATGGATCAGCTTCCCGTGGTCCAGGTAGACGAAAGGAGGacgatgaagaagaagaagaggaagatgatCTTGAGGAACTGCATGCCGCCTTTCAGACGAAGCCAAAGGGCTCCAGTGTTGACAAACATGAACTGGTTTTTGTGGACAGTAAGGGTGTTGTAAAGCAGTTCCTGCCCAAACATGGCCAGACCATGTTGGATAAGCTGAATCAGCAGCGGTTAAATAACCAGTTCTGTGACATTACCTTGCTCATTGAGGCTGAAGAGTATCGGGCACACAAAGCCGTCTTGGCTTCTTGTAGTGATTACTTCTATGAGCTCTTTGTTGAGAAGGGTGCTGTGGCCAGCCATGAAGCCGTTGTGGACCTCTCAGGCTTTAGCAAGGCAAGCTTCCTGCCTTTGTTGGAGTTTGCCTACACCTCAGAGCTGACATTTAACTTCTGCGTTATGGCAGAGGTGGCCATGCTTGCACGGCACCTGCACATGCCTGAAGTGCTTCAGATTTGCGAGTCAGTGCACAAAAAAGTGGAGGAGCAGAAGCTAATGGTCTATCAGCAAGGAGACGTGCACACAGTGATAGCCAGGGAAACTCTGCCTGCTCAGCCAGTGGCTCCTTCTGACTCTGGAGCTTACATGGTGGCCATGGAGAGTGATGGCCAGGCAGTGGTGGCTCGCTCTGCACAGACTGAAGCTGAACACTCCATCACCGTTATCACGGGTGAAGAAGGAACAGCCGAATCTCTGGCTTTGCTTGCTGGGGCGACAGTGGATGGAGAGACTATGACTGTGGTCACACACAGTGGCCAAGCTGGCTTGCCCGAATCTCTCTCTATTGTGGCCCATACTGGCCAGTCAGAAGCAGGTGAAACCATGACTGTGGTCACTCACTCTGGGCAAGCGGGCTCAAGTGAATCCCTGGCTGTGGTTCAGGCGTGCTGGACAGTGGATGAACCTCAGGTAGTGGAAACACCGGTAGCAGGGAGCATGGAGCCTGGTGCCTACATTATTAGCGTAGAACCAGGCAAGATGGCTCCTACCGAGAAGGTTCATCTAACTGCATCAGCACCGGCTCTTCGGGAGGAGCCACTGGTCCAGGCTTTAGAGCCTCTACCCCAGAATGTAGTGAGTGCACAACAACCGCCAGCCTCTGCACCTCAGAAAAGGAGGCCAGGGAGACCCCCAAAGGTGAAGCAGCCCCCACCAGAACAGGAACCAGTAGTGACCGAGGTTGCAGAGAGTGTTGCAACGGGAGGAGAGGACGAGAAGAAAGAGGAACAAGAGAGTGTTGACCCTAATAAGAGGTTCCTGAGGAAGAGGTCAATGAGGGAAGGAGGATACGTTCGTCTGCATATGGGACTTGAGACAGAGGAGGAGATGTCAAATACTGTGAAGacACCTCAGAGACTGGTGAAGCGAGGCCGTGTGTCCCAGTCACTAAAGAGATCATCACCTGACTCTTCTGAAACCGAGCCTCAGTCTGCCTCTGATGGTACAAAGTCACTGCCTGAGGGAGCAGAGGCAGCTGGAGCCGAGGTGATGCCTGTAGAAGAAGGGGCCGCACgagaaaaaacagagggagCAGTGGATGGAGAACACACGTGCAGCGAGTGCGGCATGGTGTTTCAGAGACGCTATACTCTCATCATGCACATGCTGAAACATGAGAAGTCACGCAGTTTCAAGTGCACTCTGTGTAATAAAGAGTTTCAGTATGCTGTCTCCCTCCGTGCCCACTTGGCTCGTCATAAGCATCAGAAGTCCCAGAGATCATCTTTGGCCCGAGGAGCAGCTGATGAGGTTTCGGATGGGTTGGAGGGTCAGGCCAAAAGTCGCACCAAGCGCGAGTTTGTGTGTGACATTTGTGGTAAGACACTGCCCAAGCTGTACTCTTTGCGGATCCACATGCTGAACCATACAGGTGTGCGGCCACACTCGTGCAGGGTCTGTGGGAAGAGCTTCGCCACCAAGCACAACCTGAAGATGCACCGAGCTCTGCATGACGCAGCCAAGCGCTTCTACTGCACCATGTGTGACAAGTCCTTCGTCAGCAAGAGGAGCCTGAATGAGCACATCAGCGTTCATACAGgtgaatcaaaatatttttgccaGACATGCGGCGCGTCATTTCACCGGGCATCGGGCCTGAGCAAACACATGAAAAAACATCAACCCAAACCAGAGACCCGTTCTTTCCACTGTTCCCACTGTGATAAAAGCTTCTACGAGGCGAAGGACCTGCAGCAGCACATGAATAAGCACTTGGGCGTGAAACCCTTCCAGTGCCAGGTGTGTGGGAAAAGCTACAGCTGGAAGAAGGACTGGTATTCTCACGTTAAATCGCATACCGTTGCAGAACCTTACAGGTGTAACGTGTGTGGGAAGGAGTTCTTTGAGAAGGCTCTGTTCAGGAGGCATGTGAAGAAGGCCACCCATGGAAAGAAGGGCAGAGTGAAGCAGAACCTGGAAAGGGAGTGTGAACACTGCGGCAGGAAGTTCACTCAGCTCCGAGAGTACCGCCGCCACATGAACAACCATCAAGGTGTAAAACCGTTTGAGTGTCTGACCTGCGGTGTGGCATGGGCTGATGCCCGCTCATTAAAGCGccatgtgcgcacacacacaggtgagcgcCCCTATGTGTGTCCACTGTGCCAGGAGGCCCACATTGACGCCCGCACATTGAGAAAGCACATCTCCAAATACCATGGCGATCAGTTGCCAGGTAAGATCATGTTAGAGAAGGACACGCTACAGTTTCATAATCAAGGCACCCAGGTGGAGCACGCTGTCAGCATCCTGAGCCCCGAGCTGCCCCCTGAGCTGTGCCCAGCGGAGGCACCCTCTACCACCGAGGAGATTGAAACTGTGCTCATCACAGAAGAGACGGTGGAGGCCATGCAGGCCATGAATGAGGGCAGTGTCACCACGCTGTCGGACCAGAGCATCATGCAAGTGGTGAACTACGTCCTGGCACAGCAGGCTGGCGCAAAAGCGGAGGAAGAAGAGGCCTCAGATATCATCCAGACTATGGAGGTGGAGGTGGCTCATGTAGCCGAGGTGGAgtgacagaaagacacacacaggcttaaaagcaaagaaatgagaGTGGAGTTGTGTCTAAATTGTGACTCAAATAAACAGTGTACCTGGCACAGATAGTGTCAGTATagttacacatttatttttgttgtacaATATAACTTGAGGAACTTTGAAGTTCTTCCTCAGTtggagtgcatgtgtgtgatgctTTACCcagcagtgtgtatgtgagagcaTGTCCAAGTGAtttgtatactgtacatatgtagAAAAAATGCAGTCTGGAAGAAATGctaataatttacaataaagtGCGTTACATAGGTTA

Function

GO: NA

KEGG:

id description
K10498 ZBTB11; zinc finger and BTB domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35799 lncRNA downstream 33867 20104252 ~ 20112518 (-) True G30320
TU35741 lncRNA downstream 132380 20012425 ~ 20014005 (-) False glmnb
TU35735 lncRNA downstream 160466 19984675 ~ 19985919 (-) True G30270
TU35712 lncRNA downstream 222406 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 232434 19913653 ~ 19913951 (-) True G30246
XR_004579569.1 lncRNA upstream 41061 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 43374 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 90446 20246605 ~ 20246871 (-) True G30421
TU35911 lncRNA upstream 90952 20247111 ~ 20247337 (-) True G30422
TU35912 lncRNA upstream 92007 20248166 ~ 20248509 (-) True G30423
XM_026921212.2 mRNA downstream 4128 20112945 ~ 20142257 (-) False dipk1ab
XM_026921221.2 mRNA downstream 4128 20112945 ~ 20142257 (-) True dipk1ab
XM_034313310.1 mRNA downstream 45187 20039757 ~ 20101198 (-) False evi5b
XM_034313306.1 mRNA downstream 45225 20039653 ~ 20101160 (-) False evi5b
XM_026923691.2 mRNA upstream 15969 20172128 ~ 20183294 (-) True dpt
XM_034311036.1 mRNA upstream 51596 20207755 ~ 20246008 (-) False nme7
XM_026923896.2 mRNA upstream 51596 20207755 ~ 20246008 (-) False nme7
XM_026923886.2 mRNA upstream 51596 20207755 ~ 20246008 (-) False nme7
XM_034311031.1 mRNA upstream 65581 20221740 ~ 20246008 (-) True nme7
trnap-cgg_1 other downstream 759872 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 765873 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1329187 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1330055 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1339635 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1307702 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1307702 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1307702 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1307702 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1307702 21463861 ~ 21531428 (-) False raver2

Expression Profile