RNA id: XM_034310863.1


Basic Information

Item Value
RNA id XM_034310863.1
length 827
RNA type mRNA
GC content 0.43
exon number 7
gene id ube2c
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9978873 ~ 9982851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGTCTGAAACACGGACAGAAATCGACTATCAAGAAGTAAATCGAAAGCTGATAGAAATAAATGGTGCTAGGGTTCGCCAGTTAGCCAAACTaagctttttaaatgttaaattaaagaaCCTCGAGAGCAGACTTTAAAGCCATGGCCTCTCAGAACCTGGATCCTGCTGCAGCTTCTTCTACAGCCGCCTTAAAAGGAAACGAAACAGCCGGAAGTGTGTCGAAGGGCTCCGTTAGTAAgagGCTTCAGCAAGAGCTCATGACGCTCATGATGTCAGGAGACAAGGGAATTTCAGCATTCCCAGAGTCTGACAATCTCTTCAAATGGATTGGCACGATAGATGGCGCACAGGGAACAGTGTATGAAGGTTTGAGGTATAAGCTCTCATTGGAGTTTCCTAGTGGATACCCCTACAACGCTCCTCGGGTGAAATTCATCACTCCTTGCTTTCATCCAAATGTCGATGAGAATGGGTTTATTTGCTTAGACATTTTGAAAGAGAAATGGTCTGCTCTCTATGACGTTCGATCCATTCTGCTGTCCATTCAGAGTTTACTTGGAGAACCCAACAATGATAGCCCTATGAACTCTGCAGCTGCAGAATTATGGGATAACCAGGAAGCCTTCAAAGCCCATTTGCACTCAACCTACAAGAATTGACCGACAAAATTGGGCACTCCTGCCTCTTCTCTTTTATCTCACTGTGTGAcctcatttctttatttttgcccatgactatgtaaatttaaatgctGAGTCTGTTTCTGTACAATATTTGTATGTTGAATAAGCCTGTCTCAATAAAATGCCATTCAGTAGGTGGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06688 UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29143 lncRNA downstream 39830 9938256 ~ 9939043 (-) True G24572
TU29081 lncRNA downstream 110595 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA downstream 110595 9863367 ~ 9868278 (-) False G24516
TU28757 lncRNA downstream 303134 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 342354 9635854 ~ 9636519 (-) True G24260
TU29184 lncRNA upstream 169537 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 178752 10161032 ~ 10161241 (-) True G24617
TU29193 lncRNA upstream 185931 10168211 ~ 10168469 (-) True G24620
TU29196 lncRNA upstream 188690 10170970 ~ 10171175 (-) True G24623
TU29745 lncRNA upstream 946571 10928851 ~ 10934133 (-) False itcha
XM_026920191.2 mRNA downstream 24728 9942055 ~ 9954145 (-) True LOC113530316
XM_026920200.2 mRNA downstream 24729 9942055 ~ 9954144 (-) False LOC113530316
XM_026921922.2 mRNA downstream 222277 9752621 ~ 9756596 (-) True csrp1b
XM_026930147.2 mRNA downstream 229109 9743031 ~ 9749764 (-) False tnni1b
XM_026930138.2 mRNA downstream 229109 9743031 ~ 9749764 (-) True tnni1b
XM_026926845.2 mRNA upstream 785 9983065 ~ 9992886 (-) True LOC113534196
XM_026918173.2 mRNA upstream 12069 9994349 ~ 10006093 (-) True pcif1
XM_026918181.2 mRNA upstream 12075 9994355 ~ 10006069 (-) False pcif1
XM_026923186.2 mRNA upstream 43144 10025424 ~ 10033450 (-) True ctsa
XM_026924480.2 mRNA upstream 62482 10044762 ~ 10198391 (-) False slc12a5a
TU29080 other downstream 110595 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 259903 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 537063 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1494692 8481051 ~ 8484181 (-) False tcta
TU29342 other upstream 507013 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3256424 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3516325 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3649982 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3891434 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile