RNA id: XM_026922899.2


Basic Information

Item Value
RNA id XM_026922899.2
length 3720
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC113531909
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6744383 ~ 6770848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctactactgctactactgctactactccAACTACTACTGCCAACTAAACTACAACTCGTCAGAGTGGATTTGAATAAGAAATATCTGGCAACCCAGTTTCTCTCACACTGCGGAACTCCACACGGGTGGATTAGAAACTATAGTAGAAACAAGACGTTTCACAAATGCTTGTTAATTATTAGGTTCACACACGTTACGGCTTACTAAACAATTTTACACATCCATTAAGCTAAAGAAGAGTGTAAAGCTCGGAGTATTTAGTCGTTTAGGTGCAGGTTTAATCAGCGTCGACCACCTgcagttagccagctagcataaAGTTCAATTCAAATGTCGGTCTTTAGATAGGAAACGTTAGCTATCATAACAAGTCATGACGGAAAGAAGAGAGCAGGTACAACTAAGGAACAACCCTCGCAGGCAGCTGAAGAAGCTTAGTGAAGACAGTCTGACCAAGCAGCCTGAAGAAGTGTTTGATATATTGGAGAAACTCGGAGAGGGGTCTTATGGCAGCGTATTCAAGGCACATTATAAGGAGACTGGGGAGATTGTGGCGATTAAACAGGTTCCTGTGGAGTCGGACCTACAAGAAATCATTAAAGAGATCTCCATTATGCAGCAGTGCAACAGTCCGCATGTGGTGAGGTATTATGGCAGTTACTTTAAGAACAGTGATCTGTGGATCGTCATGGAGTACTGTGGGGCTGGCTCTGTGTCTGACATTATCAGACTACGCAACAAAACATTAACAGAAGACGAAATAGCTGCCATTGTGCAGTCCACACTTAAGGGACTGGAATACCTGCACTTCATGAGGAAGATCCACAGAGACATCAAAGCCGGAAACATCCTGCTGAACTCTGAGGGACAGGCCAAACTTGCCGATTTTGGCGTTGCGGGACAGCTAACTGACACGATGGCGAAACGCAACACAGTGATCGGAACGCCGTTTTGGATGGCTCCAGAGGTCATTCAGGAAATTGGCTATAATTGTGTAGCAGATATCTGGTCTCTGGGCATCACTGCTATAGAGATGGCCGAAGGGAAGCCACCATATGCAGACATACACCCTATGAGGGCAATATTCATGATTCCAACAAATCCCCCTCCAACGTTTCGGACCCCTGACCAGTGGTCAGAAGCTTTTAGGGATTTTGTGTCGCAGTGCCTGGTAAAGAATCCTGAGACCAGAGCGACAGCCACACAGCTATTACAGCACCCATTCATAAAGAGTGCTAAGTCCAACAGTGTTCTGAAGGCACTAATCACAGAGGCTATGGAGCTCAAACTCAAGAAACAGGAGATTCAACAGAGAGAGCAGGACGCAGAGGATGAAGAAAACTCGGATGAAGATGAAGTCGATCAGGGTACTATGGTGAGGGCCGACACATCAGATATGGGAACTGTCCGTTCAGCCGGTTCGCTCGGAAGTTCATTGGGAACCATGATTGAGCACAATGACAGCACCTTGGAGTCTCAGCTTGGCACCATGGTCATAAACTcagaggacgaggaggaggatgCAGGCACCATGAAACaTCTTCAAGAAACAATGCAGCCAGCTAAGCCGTCATTCCTACAGTATTttgaacagaaagagaaagaggacaaCAAAAATGGTGAAAACAACAGTCACAAACAGCCTGCGGACGCGGACGTGGAGGTGATCCGTTCCTTAAGTGTAGAGGAGCTAAAAAGACGCCTGGCCTCTCTGGACCCTGAGATGGAGCAGGAGATTGAGGCGATCCACCAGCGCTACCAGGCCAAACGCCAGCCCATTCTCGATGCCATTGAGGCCAAAAAGCGACCTCAGCAGAACTTCTAAACCAGCTGAAGAAACTCTTGATGATCCCTCAACAATGATTGACACTGTCAGTTACCTATAAAGGTACATGTGCCAGTCCCAGCTACACTTCCTCATGTTTTTAGTTTAACTTACAATTCTCTCTTTGcatttgttatattattttaaaatgctgtatcTACACCATTATTGGTACTGGATTGGTGTTACTGTGGGCTCAAAAAGCAGGGAACAACATTCTGTCATACACTGTTTGACTTACTGCACTTTTTTAAGACTTATGTTACTTTGGCatgtatgttgtatgttttttgtttgtttgtttttgtttaaaatagttGTACGTAGCACAGTTCACAAAATCTAGTAGTCATTAAAACAAGCTAATAATTAGGCTGGATATTCTTATGTATAGGATCTTCTAAAGCAGGCAACTAAAACAGGTCTACAGAACATAGAAAGAATACAAACCATGCATCTTCTAGCTGATATGCGAGTGGTATAGGTTTAAGTATGTCTTTTTAAACACAATCTGTCACATCTGCTGTACTGTCAAATCATGTTAGCTCAATATATGCACACCCAAGAATGATTGTGCCAGGTTAAAACCTAAAGTGGCATGGTAAAACTACAACTGGAATGATAAAAATCAGCCTATTTGGAAATAGAACCGTCCTACAGtagtgataaaataaaaacatgcctgCATTAAAAAATCCTTTTAGTGAAGTGACATAGAAGAAGACCTATATTTTAGAGTTGAGTATTGAGCTGCTTTACTATCCACAACTCAGTGTTCACATTCCAGTTGGACCTATTCtccaagcagcagcagcacatgTTAACAGTGTCTGGTCACAGGCATAGAGACAGGGTTGTGTTCAATAAGCAATGCTTCATGCTACTGTGCAGAGATTTTATAGTTCCCCATGAACTATAACACAGCCACAAATAACTTTCTAGTTGTGGTACTCAAAGCAGGTGGAAGGATCTGCTGAGCGGCAAGTGATGAGAGCAGTCACAACCAACCAGATACTACTACATTAAAATTCATGGTAAAAACTTTTGATAACCAGATGTCCTTAAAAACACAAGAAAGCTCAGTTTCACCTGATCATGGCTGTAGTTTAAGTATCAATGCTGTTTGTAAACACATTTCCACAACTTGAATGAACATATTCTTCATCTTGCACTCTGTAAGTAACAACTCTCTGCAAGGGCATGAGTGGAAACCTAGAGCACCCCCTCTGTTTTGTCTGTTAGAATATGATATTTGATATAATGGTGTACTAATTtaccaaaaaagaaataataataagagctgcatacagacatttttctctAATGGTTAATGTCAGATCAGGCAAACATGAAGTTGGAAAGGTGACTAAAATAACCACTTttataaaatagtttattttttaacattgaaaGTTTTTGGAAGCAAGGAgggcctgatttttttttttttagctggaGTGTAAGTTTGTCCCTGCGAATTAGACTCAGGTTTAATTGACTCAGGATATATTTGTATGGCAATGCATAGCTACTGTGAAAGCCTTACATAGTGCTTAGTGCTTATATACcccacaaaccttttttttaggATCAGCTAAAAAGCCTTTCTTCTTTTTGGAGTTTGTTACACTCTGTGACTGATAAATAGTTTTGTTGTCAAACCTTTACAGTAGTAATGCaggctgctttttatttttatttttattttatttttttaaatgctcaaTGTGAATACAGAACCAATGTCAGTACACCTCATCTGTCCTAACACTGGTCCTGAACAAGGATTTTGTCTGTGCCTTAAATTATGCAAAATCTTTTTGCAAGTGTTTTAAAGTTGGATTTGTCAGTTTGTTTTATGTTTGAATAATAAACTGGATTCATTATAATTGTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04411 STK4, MST1; serine/threonine kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27026 lncRNA downstream 60653 6683454 ~ 6683730 (-) True G22699
TU27022 lncRNA downstream 68696 6675480 ~ 6675687 (-) True G22695
TU26972 lncRNA downstream 121941 6621935 ~ 6622442 (-) True G22650
TU26832 lncRNA downstream 443336 6298122 ~ 6301047 (-) True G22538
TU26833 lncRNA downstream 460435 6283115 ~ 6283948 (-) True G22539
TU27226 lncRNA upstream 28670 6799518 ~ 6800819 (-) True G22896
TU27695 lncRNA upstream 901852 7672700 ~ 7675334 (-) True G23337
TU27688 lncRNA upstream 934279 7705127 ~ 7710210 (-) True G23330
TU27777 lncRNA upstream 1112680 7883528 ~ 7883813 (-) True G23417
TU27786 lncRNA upstream 1135477 7906325 ~ 7907008 (-) True G23426
XM_026921138.2 mRNA downstream 142274 6578612 ~ 6602109 (-) False rbpjl
XM_026921156.2 mRNA downstream 142274 6578612 ~ 6602109 (-) False rbpjl
XM_026921147.2 mRNA downstream 142274 6578612 ~ 6602109 (-) False rbpjl
XM_026921129.2 mRNA downstream 142274 6578612 ~ 6602109 (-) True rbpjl
XM_026928164.2 mRNA downstream 189199 6549355 ~ 6555184 (-) False oser1
XM_034309682.1 mRNA upstream 11425 6782273 ~ 6787592 (-) True rhebl1
XM_026918278.2 mRNA upstream 30077 6800925 ~ 6959160 (-) True cntn4
XM_026918266.2 mRNA upstream 295470 7066318 ~ 7193141 (-) True LOC113529215
XM_026914958.2 mRNA upstream 511159 7282007 ~ 7370519 (-) False chl1b
XM_026914939.2 mRNA upstream 511159 7282007 ~ 7370519 (-) True chl1b
TU26888 other downstream 264372 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 667506 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 1208323 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 1208376 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 1543171 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 1491771 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1710203 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1710203 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1710203 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2664715 9435563 ~ 9441810 (-) False tusc2a

Expression Profile