RNA id: XM_026923186.2


Basic Information

Item Value
RNA id XM_026923186.2
length 2122
RNA type mRNA
GC content 0.44
exon number 15
gene id ctsa
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10025424 ~ 10033450 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTGAAGCTTTAAGATTTTCTTCACTCAGTCACGGATTATCAGCAATGTGACCTGATCACGAGTTTGATGTCACGTGATCTCACGGCTGTACTTATGCGGTAGCGCACTTGAAACTTCCTGCGAAAGGGTGGAAAGATGCAGGCGGTGTTACTTGTGTCCCTGTTGGGAGTGTTAGGAGTGTTGGGAGCTCCAGATGCGGATGAGATTAAATCTCTCCCCGGACTTTCCAAACAGCCGAGCTTCAAGCAGTACTCAGGCTACTTGACCGTGGCTGGCAACAAACACCTCCATTACTGGTTTGTGGAGTCGCAGAAGGATCCTGCGAGCAGCCCGGTGgtgctgtggctgaatgggGGACCAGGCTGCAGCTCTCTGGACGGCCTGCTCACAGAACACGGCCCTTTCCTGGTCCAGGATGATGGGACTACTCTACAGTACAACCCTTATTCCTGGAATATGATTGCTAATGTGCTATACCTGGAGTCACCAGCAGGTGTCggtttttccttttctgatgACAAGAAATACTCAACCAACGACTCAGAGGTATCCATGAACAACTACTTGGCCCTCAAGGAATTTTTCCGACTCTTCCCAGAGTACAGCAAGAATGAGCTTTATCTCACAGGCGAGAGCTATGGAGGCATTTACATCCCTACACTAGCTGAGAGAGTTCTGGAGGACAGTAGCCTCAACCTGCAGggtaTAGCTGTTGGAAATGGCTTGTCCAGCTATGAACTGAATGACAACTCTCTTGTCTATTTTGCAAATTACCATGGACTGCTTGGAGAGAGtttaTGGGCAACTCTGCAGAAATATTGCTGCAAAGAAGGACAATGTAACTTCTATAACAATCCTGATCAAGCATGCTCTGATGCAGTGACGCAGGCACAGAAAATTGTCTACAATTCTGGACTTAACATTTATAACCTGTATGCTGATTGTGCTGGTGGAGTACCTTACAGTACAAGCATTGAAAATGGACGGCTTGTTATTCATGACCTTGGCAATAACTTCATTAACCACAAGTGGTCCAAGTCATGGAACCAGAAACTGCGAGGACTGGGCTCTGTTGTCAAATCAGTAAAGCTTGACCCTCCCTGCGTCAACTCTACCCCGTCTGCTATGTACCTGAACAACCAGTATGTCAAGGCGGCTCTCCACATCTCTCCTAATGCACTTGACTGGGAGATCTGCAGCGCTGAAGTCAATCTTGACTATAGCCGTCTTTACATGGATGTGAAGAAGCAGTACCTGAAGATACTTGGAGCACTGAAATACCGTGTGCTGGTGTACAATGGGGACGTGGACATGGCTTGCAATTTCCTCGGTGATGAGTGGTTTGTTGAGTCCCTTCAGCAGGAGGTCCAGGTGCAGCGCAGGCCGTGGCTCTACTACAATGGTGAGACGCAGCAGATTGGTGGTTTTGTCAAGgagttctcaaatctgacttTCCTTACTGTCAAGgGTTCTGGTCACATGGTCCCCACCGATAAGCCCATAGCAGCCTTCACCATGTTCAGCCGGTTCATCAAAAAGCAACCATTCTAATGTTCATAAACGTTCTGTACTGTTGAGTTGGAATTTGCACTGAATCACTGTGAAGCACACTGTGTTCTAGAGAAATCAAATTCTGGTATAGATGTATATTAACTGTgctcatggttttttttttttttttttttttaatctttttgatagttaaaaaaatgtggttGAATGACAAGGGATTGTGAACAGCAGACTGCAATGCTGCTATTTTGCTTCAAGTGACTACATAATCCCGACACAAGGGGCTTAATAGTAGCTGCTAATTCTGGGCTGATGAGTCTGGTTTTTAATGTTCAACTGTTCAAATGATTCTCTGTATCTTGCAgctgcatttaaattttaacaaGGGCAAAAGGGATTAGTACTTCTTGTCCATTGAAGAAGTGCATGACCAAAATGAATATAGGAATCATGTGGACCTAGTTTTCTCCATTTGCTCAGGGTTGCTTTAAATGGCTTTGAATGACATTAGGGTATTGATGTGCCTTTACAAtcagtgttttttgtctttttcttcttgttcttcattCCTGATTTATCTATCAAAATAAACctgatattattttaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K13289 CTSA, CPY; cathepsin A (carboxypeptidase C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29143 lncRNA downstream 86381 9938256 ~ 9939043 (-) True G24572
TU29081 lncRNA downstream 157146 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA downstream 157146 9863367 ~ 9868278 (-) False G24516
TU28757 lncRNA downstream 349685 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 388905 9635854 ~ 9636519 (-) True G24260
TU29184 lncRNA upstream 118367 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 127582 10161032 ~ 10161241 (-) True G24617
TU29193 lncRNA upstream 134761 10168211 ~ 10168469 (-) True G24620
TU29196 lncRNA upstream 137520 10170970 ~ 10171175 (-) True G24623
TU29745 lncRNA upstream 895401 10928851 ~ 10934133 (-) False itcha
XM_026918173.2 mRNA downstream 19331 9994349 ~ 10006093 (-) True pcif1
XM_026918181.2 mRNA downstream 19355 9994355 ~ 10006069 (-) False pcif1
XM_026926845.2 mRNA downstream 32538 9983065 ~ 9992886 (-) True LOC113534196
XM_026922415.2 mRNA downstream 42573 9978873 ~ 9982851 (-) False ube2c
XM_034310863.1 mRNA downstream 43144 9978873 ~ 9982280 (-) True ube2c
XM_026924480.2 mRNA upstream 11312 10044762 ~ 10198391 (-) False slc12a5a
XM_034313191.1 mRNA upstream 11312 10044762 ~ 10140580 (-) True slc12a5a
XM_034313196.1 mRNA upstream 11312 10044762 ~ 10140579 (-) False slc12a5a
XM_034313200.1 mRNA upstream 11312 10044762 ~ 10097180 (-) False slc12a5a
XM_026923241.2 mRNA upstream 180458 10213908 ~ 10219381 (-) True LOC113532087
TU29080 other downstream 157146 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 306454 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 583614 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1541243 8481051 ~ 8484181 (-) False tcta
TU29342 other upstream 455843 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3205254 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3465155 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3598812 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3840264 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile