RNA id: XM_026923241.2


Basic Information

Item Value
RNA id XM_026923241.2
length 2313
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC113532087
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10213908 ~ 10219381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGAATCCATAAATGAATAGTGGGCAcgtgctccctctctctctctctctcccctctctctctcttttgcaaGCCCTGCTTCTGATTGGTCCCGtgtctaacagtcacaaacacCACTAGGATATATATTGTAACACGAGTCAGGCATTTAAGACAAAAGCAGCTCAGGAACAACTTTACGCACGATCAAGGTGAGACAGCAGAGATCCAGGCTACGATGAGAGCGCAGATTCAGAAAGCCCCAGCGCAGATCCTCGAGgtgctgaagaagaagaagtcggTCGGGCTGCAACACTGCAAGCCAACATCCTCGGTGTGTGTGCTGGACTCGAAAGATGCTGCGCCCTGCGCTGGACACACTGTCCAGTCCATCCCAGGCCCAACCAGCTGGCCCCTGCTGGGGAACCTCATCGACATCCTGCGGAGAGGAGGCTTAGAAAAACAACACCAGACAGTGatggaTTACCATAAGAAATTTGGCAAAATCTTCCGGATGAAAATGGGCTCGTTTGAATCAGTGAACATTGGCGCGCCTTGCTTGCTGGAAGCTCTGTACAGGAAGGAGGGGAACTATCCCCAGAGACTGGAAATTAAACCCTGGAAGGCATACAGAGATCTGCGGGACGAGGCTTATGGACTTCTCATCTTAGAAGGAAAGGACTGGCAGAGAGTGAGGAGCACATTTCAGCAGAAATTCATGAAACCAACTGAAGTTGTGAAACTTGATGGGAAAATTAATGAGGTTTTAGTCGATTTCCTTAACCGGATTGGACAGGTTAATGTGAACGGGAGGATCAATGACTTGTATATTGAACTGAATAAGTGGTCCTTTGAAACAATTTGTTATGTGCTCTATGACAAACGATTTGGGATTTTGCAAGAAAACGCCAATGACGAGGCAACTGACTTTATCACAGCGATAAAAACGATGATGAACATGTTTGGCAAGATGATGGTGACTCCAGTTAGTCTCCACAAGAGCCTGAACACAAAGACATGGCAAGACCACACAGCTGCCTGGGactgtatttttaatacagcaaaaatCTACATTGACAAGAAGTTGAAGAGACACTCAAGTGGAGAAACCGATGGCTTCCTTAGTGATATCTACCATAACTGTCCCCTCACCAAGAAGGAGCTGTATGCAGCAATAACTGAGCTCCAGATTGGGGGTGTGGAGACAACTGCCAACAGTGCATTATGGGCTATTTTCAACCTCTCACGGAACCCCCATATTCAGGACAAGCTGTTGAAGGAGATTAGAGAAGTGGTGCCCCCTGGACAGGTTCCATGTGCTGAGCATATTAAGAAAATGCCATATCTCAAGGCATGTCTGAAGGAGTCCATGAGACTTTCACCCTCCATCCCCTTTACAAGCCGAACTTTGGACAGAGACACTGTGCTCGGGGAATATAGTTTGCCTAAAGGGACAGTTTTGATGATTAACAGCCAGGCACTAGGGTCTAATGAGGAGTACTTTGACAATGGGAAGCAGTACATGCCAGAGCGGTGGCTCGAGAACAAAACCTCTATCAATCCATTTGCATATGTACCTTTTGGCATCGGCAAGAGGATGTGCATCGGCCGGCGCCTGGCTGAGCTACAGATACAGCTCGCTCTGTGCTGGTTAATTCGTGATTATGAGATTGTAGCAACAGATTATGAGCCAGTGGAATCCGTACATACCGGAACACTGGTACCCAATCGAGAACTTCCTGTGGCTTTCATCCGTCGATAAGACTGCTTCAAAATCAGGTGGAAACAGAAAACTCCATAGCCTTTGGCCAGAAGGCTCGATTTTGCTGCTACTCTGCTGCTAAACATCAGAATGTATTGATCTGATTACTTAAGATATACCTCAgataattatttgtaaatgtaattgtaacTGATTagaataaacataaatgtacaTGCAGTATATTCCATGTGACGATATATTTTAACGTCATAGTAACATCACTACCTATCAGTTTAGATGACCAAACTGAGTCATTAAAAAATCAGTTTCATAATGCTGGTGACATACTACCTATAAAGAATTCTTTTGTAACCTGACATTTAAAATTCCATATTATATGTACACTAAAATCATTCAATGTACTATAGCCTTAGAGTATGTGTAAAACTATGTAAACTATGTAAAGCTTGGAGTGTCTGCAAATAGTGGTCttatatatgttgtatataGGTTAAATATATCACAAAGGTAATGCTATTTATACTTAAACATTACAATGTTagcaatgtatttttttaaatgtatctgTAACATCtttgggaaataaataaataaatacaaaaatggc

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07436 CYP24A1; vitamin D3 24-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29196 lncRNA downstream 42733 10170970 ~ 10171175 (-) True G24623
TU29193 lncRNA downstream 45439 10168211 ~ 10168469 (-) True G24620
TU29190 lncRNA downstream 52667 10161032 ~ 10161241 (-) True G24617
TU29184 lncRNA downstream 61743 10151817 ~ 10152165 (-) True G24611
TU29143 lncRNA downstream 274865 9938256 ~ 9939043 (-) True G24572
TU29745 lncRNA upstream 709470 10928851 ~ 10934133 (-) False itcha
XR_003403497.2 lncRNA upstream 747315 10966696 ~ 10984007 (-) True LOC113534445
TU29800 lncRNA upstream 802142 11021523 ~ 11021725 (-) True G25184
TU29801 lncRNA upstream 803058 11022439 ~ 11022641 (-) True G25185
XR_004579523.1 lncRNA upstream 1038383 11257764 ~ 11262304 (-) True LOC117599085
XM_026924480.2 mRNA downstream 15517 10044762 ~ 10198391 (-) False slc12a5a
XM_034313191.1 mRNA downstream 73328 10044762 ~ 10140580 (-) True slc12a5a
XM_034313196.1 mRNA downstream 73329 10044762 ~ 10140579 (-) False slc12a5a
XM_034313200.1 mRNA downstream 116728 10044762 ~ 10097180 (-) False slc12a5a
XM_026923186.2 mRNA downstream 180458 10025424 ~ 10033450 (-) True ctsa
XM_026925110.2 mRNA upstream 21873 10241254 ~ 10259219 (-) True eya2
XM_026925117.2 mRNA upstream 21873 10241254 ~ 10259218 (-) False eya2
XM_026940250.2 mRNA upstream 116012 10335393 ~ 10339327 (-) False gcnt7
XM_026940181.2 mRNA upstream 116012 10335393 ~ 10339327 (-) True gcnt7
XM_034299696.1 mRNA upstream 333530 10552911 ~ 10685886 (-) True LOC113532783
TU29080 other downstream 345630 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 494938 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 772098 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1729727 8481051 ~ 8484181 (-) False tcta
TU29342 other upstream 269912 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3019323 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3279224 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3412881 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3654333 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile