RNA id: XM_026923318.2


Basic Information

Item Value
RNA id XM_026923318.2
length 2422
RNA type mRNA
GC content 0.51
exon number 9
gene id bcl6aa
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19544152 ~ 19552693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTAGAACAGGGGTTCTTAGAAGTGGTGATGCAAGAAGTTTCTAGGAAAGCACTACCagATCTTGACAAAATGTCTTGCGCAGCAGACAGCTGCATCCAGTTCACACGCCATGCCAGCGACGTCCTGCTCAACCTGAACCGGCTGCGCAGCAGAGACATCCTCACAGACGTCACCATTCTGGTCAACAGACAGCAGTTTCGCGCTCACAAGACTGTCCTCATGGCATGCAGTGGGCTCTTTTATTCAATATTCACTGACTCTCTAAAATGCAACATGAACGCCATAAGTCTGGACCCGAAGGTTGACCCAGAAGGCTTTGCAGTCCTCCTGGAGTTCATGTACACTTCCCGTCTCGCGCTGAAAGAGAGCCTCATCATGTCGGTCATGAACACGGCCATCTACCTGCAGATGGACCACGTTGTCGACACCTGCCACAGATTCATTAAGTCCAGTGACTCCTCCATCAAACTGCCCAGAGAGGATTTCCTGGTCAGCCCTCTGCTTTTACCTCAAGATGTTCATGGTTACAGGCCACATGAGGTTGTGGAGAACATGGCAGGACGATCCGGCTCTTTCCGTGACGGAAGGCCTTATGGTGCCATATTTACCGGAGTGAACACTCCCAGCAGCTCCTATCATATTTATAGCCAGATCCCCATGCAGGCGTTCCCTTTCCCCCTCTGTAAGCTGACAGACACCAAAAACACTTTTCCCGACTTTGCCAAAGGAGGCATCCTCCAACACAAGCACTGCCCACCAGGCGACGACTTTGCACGCAGCTCCAACGCCAGCCACTCGAGCTCATGCCACTCTGATGCCTACTCCTCCCGGGTGCTGGGGAGAAACGACGAAATGAAAAGGGAGAGCTTGCAAGGCTTGGCTCAGTCCATTGTTATGAATTCTAGAAAGCACGGACTCGCGAGCCTGGCCCAGGAGCATCAGAGAGACGTGGGCAAAGAGCAGGTTCCTTTGGCTGAAGGCGAGCTGAGCCAGCAGCCCTACTCTGTGGGTATGGCCTCCAGCGGGCACAAAGCTCTGATTAGCAGCCCGCAGAGCCCTTTAAAATCTGACTGCCAGCCCAATTCACCCACAGAATCAAGCAGCAGCAAGAATGCCACACTCTCGCACGCCTCTCAGCCTCCGACTCCACAGGGCATGCAGGACCCAAAGGCTCGCAactggaaaaaatataaattcattGTGCTCAATCAGAGCACCAAGGAGGAAGAGAGCAGCACTCATGAACCTGAGATGCGCTCACCCCAGAGGCTGGCTTTCCATCCCTCACCTGAATCTGAGCAGCCAGACATGCAGCCTGCCAGCACAAAGATCACTGAACATGGAGATGACTTCACTGTGCCCCAAGCCAGCCGCCTCAACAATATCATTAACAGAAGTCTGGAGGGTACACAGAGGAATGGTGACAGCCACTCTTCTCTTTATCTGAGCCACTTAAAGTGCACATCCTGTGGCTCACAGTCCCCACAACACTCAGATGTTTGTCCCAACACTCCTGGCTCGCGCCTTAATGAGGAGATGGCCGAGCTGCACTCTGAGTATTCCGACTCCAGCTGTGAAAACGGTACCTACTTTTGTAATGAATGCGACTCCAAATTTGCAGAGGAGGAAGTCTTAAAACGCCACATGCTTCAGGTGCACAGCGACAAGCCATACAAATGTGACCGTTGCCAAGCAGCATTCCGCTACAAGGGAAACCTCGCTAGCCACAAGACGGTACACACAGgagagaagccgtatcgaTGCAACATCTGCGGCGCACAGTTCAATCGACCAGCTAACCTCAAGACCCACACGCGCATCCACTCTGGAGAAAAGCCATACAAGTGTGAGACCTGCGGGGCTCGATTCGTTCAGGTAGCTCACCTGCGCGCCCACGTCCTGatccacacaggagagaagccatatcCCTGCGAAATCTGTGGCACACGATTCCGACACCTGCAGACGCTCAAGAGTCATCTGCGCAtacacacaggagaaaaaccTTACCATtgtgAGAAATGCAACTTGCACTTTCGCCATAAGAGCCAGCTTCGGCTGCACTTGCGACAGAAGCACGGTGCCATCACCAACACCAAGATTCAGTACCGTGTGTCCACAGCAGATCTGCCAGATTTGACCAAGgcctgctgaacacacacaaacacacaagggCTGAACCACAGCATTCTCTGAGCCCTACTTGGACAATCATCTAAAACTGTAGTGCCACACTGTGTTGAtcagacaagaagaaaaaaaaaaaaaataatcaaggcATTTAATGCCATTCTACGGGTTTCCTCTATATGTGAACATAGAACCACATAAGGTCTCTTGtcactttattgtttatatttgcatataaatatacagtaatgttGAGTGTTTTTAAGctttcagttatttaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35482 lncRNA downstream 4098 19537921 ~ 19540054 (-) True G30062
TU35304 lncRNA downstream 139531 19404408 ~ 19404621 (-) True G29905
XR_004577309.1 lncRNA downstream 158901 19383314 ~ 19385251 (-) True LOC117596148
TU35173 lncRNA downstream 284974 19258950 ~ 19259178 (-) True G29793
TU35046 lncRNA downstream 494417 18984062 ~ 19049735 (-) True G29678
TU35476 lncRNA upstream 485 19553178 ~ 19555762 (-) True G30059
TU35494 lncRNA upstream 13590 19566283 ~ 19566511 (-) True G30070
TU35495 lncRNA upstream 13838 19566531 ~ 19566735 (-) True G30071
TU35496 lncRNA upstream 14058 19566751 ~ 19567000 (-) True G30072
TU35509 lncRNA upstream 30970 19583663 ~ 19584005 (-) True G30085
XM_026924570.2 mRNA downstream 167988 19372430 ~ 19376164 (-) True im:7152348
XM_026916667.2 mRNA downstream 567215 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 567223 18970308 ~ 18976929 (-) False zgc:103559
XM_026916676.2 mRNA downstream 567531 18970308 ~ 18976621 (-) False zgc:103559
XM_034310739.1 mRNA downstream 574701 18964291 ~ 18969451 (-) True agxta
XM_026918863.2 mRNA upstream 404024 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 404024 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 433331 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 450666 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 473161 20025854 ~ 20032781 (-) True gfi1ab
trnap-cgg_1 other downstream 157639 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 163640 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 726954 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 727822 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 737402 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1911168 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1911168 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1911168 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1911168 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1911168 21463861 ~ 21531428 (-) False raver2

Expression Profile