RNA id: XM_026923634.2


Basic Information

Item Value
RNA id XM_026923634.2
length 4299
RNA type mRNA
GC content 0.43
exon number 15
gene id pde4ba
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21112205 ~ 21262115 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgagcgtgcaGCAGTGCGTCTCAGGGCCATGTACCGGCGGTCGCCCTGTCACAAGGGCAGGAATTACTTCGACTTCACTGAAGAGGTGGTAAAGAGGCTGCATGCCTCCACCTTCAGTTTCGATGTGGAGAATGGGCCGTCTGCAGGATGCAGTCCTCTGGATCCACAGGCCTCCCCTGGCTCGGGGCTCATCCTGCACCCAAACTTCTCCCAAACCGGACACAACCAGCGGCGGGAGTCCTTCCTGTACCGCTCAGACAGCGACTACGACCTCTCGCCCAAATCAATGTCCCGCAACTCCTCTGTCGCCTCAGAGCTACATGGGGATGACCTAATCGTCACGCCTTTTGCTCAGGTTCTGGCTAGCCTTCGAAGTGTCAGAAACAATTTCACCGTCCTGACTAATGTACAATGTACATCAAACAAgaGATCACCGGCTACCACGCAGCCCTCCCTCACCAGAGTCTGCCTGTCTGACGAGTCGTACCAGAAGCTGGCTGTGGAGACCATGGAGGAGCTGGACTGGTGCCTGGATCAGCTCGAGACCATCCAGACCTACAGGTCCGTCAGTGACATGGCCTCCAACAAGTTCAAGAGAATGCTGAACAGGGAGCTGACGCACCTTTCCGAGATGAGCAGATCTGGCAACCAGGTGTCAGAGTTCATCTCCAACACCTTCCTAGACAAACAGAATGAGGTGGAGATTCCTCCTCCCACACCGAAAGCCcgggagaagaagaagaagcagcagctgATGACTCAGATCAGCGGTGTGAAGAAGGTGTCTCATGGGCCCAGCCTCAACAGCGGCATCACCCGCTTCGGTGTCAAAACCGACAAGGAAGAGCTGCTGTCTAAGGAATTAGAAGATCTGAACAAGTGGGGCCTGAATATCTTTACCGTGTCCGAATATTCCAACAATCGTCCTCTAACGTGCATCATGTATGCCATCTTCCAGGAACGAGACTTGCTCAAGACGTTTAAGATCCCAACAGACACATTTGTGACGTATATGATGACGCTGGAGGATCACTACCACTTGGATGTAGCTTACCACAACAGTCTTCATGCTGCTGATGTGGCCCAGTCCACGCATATTCTCCTCTCCACACCTGCACTAGATGCAGTCTTTACTGATCTGGAGATCCTGGCTGCCATTTTTGCAGCAGCCATCCATGATGTGGATCATCCAGGTGTTTCCAACCAGTTCCTCATCAACACAAACTCTGAGCTGGCTCTTATGTATAATGATGAGTCAGTGCTGGAGAACCACCACCTAGCTGTAGGCTTCAAGCTCCTTCAGGAGGAGAATTGTGATATCTTCCAGAACCTCACAAAGAAACAGAGGCAATCACTCAGGAAGATGGTCATCGACATGGTACTTGCCACAGATATGTCTAAACATATGAGCTTACTAGCCGACCTGAAGACGATGGTGGAGACAAAGAAAGTTACAAGTTCAGGGGTGCTGCTTCTGGACAACTACACGGACAGGATACAGGTTCTTCGAAATATGGTGCACTGTGCTGACCTGAGCAACCCCACCAAGTCTCTGGAGCTTTACCGACAGTGGACGGACCGCATCATGGAGGAGTTCTTCCACCAGGGCGACCGGGAGAGAGAGCGTGGCATGGAGATCAGCCCCATGTGcgacaaacacacagcttcCGTGGAAAAATCCCAGGTTGGTTTTATTGACTATATTGTCCACCCGCTGTGGGAGACCTGGGCTGACCTGGTCCACCCTGATGCACAGGACATCCTGGACACACTGGAGGACAATCGGAACTGGTACCAGAGCATGATTCCTCAGAGTCCCTCTCCACCCTTCTACCAACCTGAAAAAGAGGGACATGTTGGCGGACCAGTGGCTGACAAGTTCCAATTTGAGCTCACCCTGGAGGAAGAGGACTCAGAAGGCACAGAAAAAGATGAACAGAGTCAGggagatgaggaggaagaggaggaggaagaggcagaGGAGGAAGATcgagaggaggagatggagcCGGCAACCACACACATCCAGATCGTAACTGAAGACGCCTCACCAGTGGATACATAGGACCTCTTAGCCTATTTTAATGGCGAgttaccatttttttccctcgcAACCTGGCAGTTGATGCTTTTTAACAAAGCCCAGAGAGAGAGCATTTTTTGGCCCTCTTGGGAGGAGCATGACTGGCCCTCCTTGCACTTAAGTTTGGAGCCAGTTGGGTTGGAGCTCTCAGGAAATAAATGctgcagacattttttttttgagctgagTGACTGACGGGTGACTCTGAGATACAGGAAGGATTGGGGCCAATCATAGACTTGTGTTTGTCTAGTAGGCGAACATTTGTGGAGTTGACACTACTGAGAGATTTTTTGTACCAAGTGACTTATTTTCTAAAGCTATTGGAATAAGTCGGGGTAGCATACGAACTACTGATGATCAAGTATTtgtaaagaaagaaactgtTTACTTTTCTGTACCATTTGTCTAAAGACTTTGTGTGCCTTTTTTACTATTGTCTTTTTAAtggtcttttttatttattgaacacaCTTTAGTATAACTGTACAcggaactgttttttttctaaaggcAAACCAGACAGCTTACACGAGAGTTGTTTTCTATAAACTGAAGAGAAAACTCAGTGTCTTCCTTTATATTTGGCAATAGAACGAAATAATCCAAATGTCTGAATATTGCAGTCAAAGATgcactttgtcatttttttttttttttactcgtcCAGTTCTTTTGGTCTTGTTTAGTTGTAAATTTGCTATGAGATCGTTTTGTATATACATACAATTCACAATAAGCATTTAAGCATAATGACAATTTGAAATTTGGCAAATCTAAACCAAATGCACTTAGACAACTTAGACTTACAAAGCTCCTATATATACTGGTTGGATATAAGCAGACTGAAGCTATATTCAGATTTTCTCGATAGAAATTCCCCCCAGTTCTTTGTAGAAGACAAGGTCAAACAATTTCCTTCAGCTTCCATTCATTAAAGTCAGTTCTCACAGAAAGCATTTTTCAATGAATTTCTCACAGAAGACATTTTCTGTGGGTAAGGCTATCATGATTTAATTTGTGAATCTctctaggaaaaaaaatagtagaaattagtaaaaaaaaaaaaacaaaaaaaaaacagttctatCTTTAAACATTTGAACTCAAATTCAGTTTAAAGCATAAAGCTTCTTTACACCTGCATTAGACCATTCAATTAGACCACATTATACATGTTATCGTCCTGTTTATCACCAATAGGTATATTTTATGGCCAAAgtagcatgagtgtgtgtgtgtgtgtgtgtgtgtctatctttctcttctATCATCTACCCATGCTTTTTTACACACCTCCTCTGTTTGGTTTGTTCATATTAGCTGAAGTCGGTCCTTTGCTGTTTATAACAGTGTATTTATTACCTTTGTAAATACGGAATGATGTTtctttgtaaatttatttttaatttatatgcaCTTGCATTACCGAAATTTGGTGGTGTTTTTTGTGTAGTGGGCTCTTGGATTGAGTctgttatattttgtaatattgttttttttttttgttttaaatattgctgaataaatatatatattatactatatatgctatataaatatatcgcACAATATACAACTGCCCAGAAAAGTAGCTTAAAGACACACAACCCAATGGTTACCGGGAGAGCCTGTAGataagacacacaaacatactgtaGACATCCATCAGGCATTAGAAGCTTTTAGTATCACTGTTTGGTGCAACATTGAAAATTTGATACCACGAGATCACAGACAAAGTGGCACTCGGCTCGAAACCTCTGCAGAATTATGAATGCAGATTGCTATGAATGGCTCAGAAATATTTATACAATGCTGGACTCTTATTCCACACATATTGGTCACAAATATCACAATCTCTGAACACCAATGTGAAATTGATATGAATtacaaaaaatgtgatcttctgtaattatttgtgctaatgtgaaatatttttctgaCCTTGTTAGCAGTTTTGAAATTCAATTTGTCAGTATAACTTTGTTAATCTATGTTTAAGATCTTTTGGTCCAATTTGTGTCCAAAAGGATTAGTCAGAGTTAGTAATATCTGCATGAGGGATGGGTTTTTCGTCTAGTAATCCCACATTGTTGCAGgtgaatatttaatgtttcaCACAATGTAtggtataatattgtatattgtgttcaataaaatctaaaactaCTTTTCTatgaagtgattaaaaatgacGCATGAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36702 lncRNA downstream 46467 21062894 ~ 21065738 (-) True G31094
TU36669 lncRNA downstream 151814 20960172 ~ 20960391 (-) True G31070
TU36467 lncRNA downstream 454822 20655352 ~ 20657383 (-) True G30899
TU36466 lncRNA downstream 455685 20575961 ~ 20656520 (-) False G30899
TU36446 lncRNA downstream 563568 20512732 ~ 20548637 (-) False G30879
TU36880 lncRNA upstream 111303 21281364 ~ 21283225 (-) False lepr
TU36922 lncRNA upstream 214348 21384409 ~ 21385276 (-) True G31298
TU37101 lncRNA upstream 219416 21389477 ~ 21412173 (-) True G31454
TU37132 lncRNA upstream 362187 21532248 ~ 21532459 (-) True G31481
TU37138 lncRNA upstream 399795 21569856 ~ 21612822 (-) True G31486
XM_034313472.1 mRNA downstream 27442 21017926 ~ 21084763 (-) False sgip1a
XM_034313464.1 mRNA downstream 27442 21017926 ~ 21084763 (-) False sgip1a
XM_034313469.1 mRNA downstream 27442 21017926 ~ 21084763 (-) False sgip1a
XM_026918042.2 mRNA downstream 31721 21017926 ~ 21080484 (-) False sgip1a
XM_034313460.1 mRNA downstream 31722 21017926 ~ 21080483 (-) True sgip1a
XM_034310139.1 mRNA upstream 112964 21283025 ~ 21317823 (-) True lepr
XM_026930465.2 mRNA upstream 172648 21342709 ~ 21378774 (-) False dnajc6
XM_026930457.2 mRNA upstream 172648 21342709 ~ 21378774 (-) True dnajc6
XM_034314869.1 mRNA upstream 172648 21342709 ~ 21378312 (-) False dnajc6
XM_026930474.2 mRNA upstream 172648 21342709 ~ 21378312 (-) False dnajc6
trnap-cgg_1 other downstream 1725692 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 1731693 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 2295007 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 2295875 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 2305455 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 293800 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 293800 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 293800 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 293800 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 293800 21463861 ~ 21531428 (-) False raver2

Expression Profile