RNA id: XM_026923672.2


Basic Information

Item Value
RNA id XM_026923672.2
length 2119
RNA type mRNA
GC content 0.49
exon number 16
gene id tgm5l
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14862967 ~ 14869703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aCAGACTCATGGAGGgtttgaAACTTATGTATGCTAGCCTGGAGGAAGCTCAGAACCATGTGTGGCACAAGACAGAAGGGCTAAACTCCACTTCTCTGGTAGTGAGAAGGGGACAGCCCTTTAGACTCACACTGAGCTTCAATAGACCTTATATGTCAAGCAAAGATGACCTCATGCTCAGGATAGAACTAGATCGCCTTTACTGTGACATTCCCATCACATCCTCAAAAGCCACATCTCAATCCCAGTGGTCTGCCTACTTTCTGCAGGGCATGCTGGACCCCAGTGCCCCTCACAaggcttctgtgtgtgtgtacagtccgCCCACTGCTATCGTGGGAGTGTATCATCTCCATCTGTTGTTCATGTCTCGCTATGGCTCTTCCAGCCGCAGGATTGGACAATTGACCCTGCTGTGTAATCCATGGTGCACAGCTGACTCTGTCTACTTGCCTGAAGAAAATCAGAGGGAAGAGTATGTGAGGAATGACTTTGGCCTGCTGTACCAGGGCACAGCCAAAAACATCAGCTTTAGGCCATGGGGCTTTGATCAGTATGAGAGTGGTATCTTGGAGATCTGTATGATGATGCTGCAGGTGAGCAATGAACACAAGAAAAACTGGAAGAGTGATTATGCTAATCGCTCTGACCCTGTTTACATCAGCAGAGTTGTCTCAGCTATGATAAATAGTAATGATGACTGCGGTGTGCTGCAAGGGAATTGGTCGGAGGATTACAGAAGTGGTGTCAACCCGTCAGAGTGGACAGGCAGTGGAAGCATTCTGAAACAGTGGGCCAAATCTGGCTTCAGCCCTGTGAAATATGGACAGTGCTGGGTTTTTGCTGCTGTCATGTGCACAGTAATGAGAGTCCTGGGAATCCCGACTCGTGTGGTCACCAACTATAACTCGGCTCATGACACTAATGGGAACCTGGTGATTGAGGAGTATTACACTGAGAAAGGGGAAAAGCTGCCTCATAATCGTGACAGCATCTGGAACTTTCACGTGTGGGTGGAGTGCTGGATGAAGAGAGGAGATCTAAGAGCAGGATTTGATGGCTGGCAGGTGGTTGACCCCACTCCACAGGAGAGAAGCAGAGGAGTATACAGGTGTGGTCCTGCCCCAGTAAAAGCCATTCGGGAGCGTCAGATCGACATGGCCTATGATGTCCCATTCATCTATGCTGAAGTtaatgctgatgtgtgtgtgtacattgtgCGCCAAGCACAAGTATTGAACTACgccactgagacagacagagttgGTGTTCTCATATGCACCAAGAGCCTGGGATCCAACCAACCACAGGATATCACTTCTAcctacaaacacaaaaaagCTCTACAGCCATCTGTCAGATCAACAAGTCCAATGCCAGGACCACGTCTAGCCAACAACCATGGATCAGCAAAAGGTCTTTCTGTACGTCTGAGCCTCATTAAAGCACCTGTTGTTGGAGAAAATATCTCCTTCTCAGTCACTGTGACTAATCATGGCAGTGTTGTGAAGACAGTGAGAGAATACGTCAATGCTCAGGCAAAGAGCTATGACCACAGTCCATCTGATACCTTCTGGGAGGCCGATAAGATCATCCAGCTTGCTCCTAATGGAAGTAAAGTGCTACAGCACCAGATCTCATACAGTCAGTATTCAGCACTGGGGAATGAGCAGCTAGTCAATTTGGCAGTGGTCGTAATGGATGTGGCCACTCAGGAGAGAGTCCTGGCTTCTGAAGAGTTTAACATCACCAGCCCAATCATCCACATAAAGGTTGCTGATGAGGATTCTATCATTGCCCGCCGACACCAGGTTGCTATGGTGACATTCACCAATCCGTTCCCTGTGGCAGTGAGAGGCACGTTGACTGTAGCAGGTTCAGGCCTGCTGGAGGACAAAGTGCTCATCAATGTTGCACTTCTGCAGCCCAGAGAGACCATGAACACTGTGGTACGCTTTACACCAAAGATGGCAGGAGTGAAGATGCTGCACGCAAGACTGAGCCTGGATATCAACCGCATTGTTATCCGTGGCTTCAGAACCATTACAGTCCGACCAGCATGAAAAGGGAAATCAGAACCAAGTACCAGAGCCACTGATTctattacagcttcaactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32421 lncRNA downstream 2721 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 72326 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 370128 14492637 ~ 14492839 (-) True G27303
TU32157 lncRNA downstream 408676 14444626 ~ 14454291 (-) True G27259
TU32152 lncRNA downstream 461538 14354841 ~ 14401429 (-) True G27254
TU32441 lncRNA upstream 14552 14884255 ~ 14884487 (-) True G27502
TU32551 lncRNA upstream 140622 15010325 ~ 15010661 (-) True G27600
TU32615 lncRNA upstream 195182 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 260300 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 275002 15144705 ~ 15146155 (-) True G27705
XM_026913137.2 mRNA downstream 48520 14797637 ~ 14814447 (-) True vstm2l
XM_026913225.2 mRNA downstream 48523 14797637 ~ 14814444 (-) False vstm2l
XM_026919235.2 mRNA downstream 160932 14600663 ~ 14702035 (-) False dlgap4b
XM_026919227.2 mRNA downstream 160932 14600663 ~ 14702035 (-) True dlgap4b
XM_026919252.2 mRNA downstream 160933 14600663 ~ 14702034 (-) False dlgap4b
XM_026922260.2 mRNA upstream 3246 14872949 ~ 14875990 (-) False pxmp4
XM_026922253.2 mRNA upstream 3246 14872949 ~ 14875990 (-) True pxmp4
XM_026927231.2 mRNA upstream 17762 14887465 ~ 15009183 (-) True LOC113534431
XM_034300435.1 mRNA upstream 20732 14890435 ~ 15009183 (-) False LOC113534431
XM_034300444.1 mRNA upstream 20732 14890435 ~ 14974051 (-) False LOC113534431
trnae-cuc_5 other downstream 470616 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 804522 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 955778 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 1228315 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 1362983 13498605 ~ 13499984 (-) False slc5a8l
XR_003403256.2 other upstream 3245 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other upstream 3246 14872949 ~ 14875990 (-) False pxmp4
TU32819 other upstream 427606 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 586932 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 592247 15461950 ~ 15469229 (-) False oxtr