RNA id: XM_026923861.2


Basic Information

Item Value
RNA id XM_026923861.2
length 2184
RNA type mRNA
GC content 0.54
exon number 11
gene id cbfa2t2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10986308 ~ 11011812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaagtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagacagagatggagagaaaaacaaagtgaGATTGTTAAGAGAGGTGAAACATTTGGATAGCTGAGCAACAAAAGAacgaaaggaaaaagaaagtggaGCGACAAATAGAGCTACAACGCAAGTGAgaaaggaagtgagagagaaataaagaagtCTTTCTGAATCTCCTCGCCCATCTGGACTCCATCTGTGTTTCTCTGGCTGCAAGTGGAGCTTGGACTACAGCTCACATATGCAGGGGGCTTAGACACATGCCCCACATatgaaggagagaaaagggGAGCGATAAGGAGCAGTAAACAAGCTAAACCAAGGGACTCACTTGTTTTTGGAATAAGgaagaaggggggaaaaaaaggaccGTCCAGagagACAGTGGAGAGAAGAAGGTTCTTGCCATGCCCGGTTCTCCAGTGGATGTAAAGACTCATTCCAGACCGGCAGTATCCGCCATGCCCCCTCTTCCCTCAGTCAACCCCAGTGGGCCCCGGCCTGCTGCCTTTTCTTCCACAGCATTGACCAATGGGATGAACCATTCTCCACCAACCCTCAACGCTGTCCCCTCCCCACCTCAGCGCTACAGTAATGGGccatcctcatcctcttcctcttcattgGCCAATCAGCAGCTTCCAGCAACATGCGGTGCTAGGCAGCTTAGTAAACTGAAGCGGTTCCTCACTACATTGCAACAGTTTGGCAACGACATCTCACCTGAGATTGGAGAAAGTGTGCGGAGCTTGGTCCTTGCCTTGGTGAATTCCACAGTCACTATTGAGGAGTTTCATTCCAGACTACAAGAGGCCACTAATTTCCCTTTAAGACCATTTGTCATCCCTTTCTTGAAGGCAAACCTACCATTGCTGCAGAGAGAGCTGCTCCATTGTGCACGAGCAGCTAAGCAGACTCCTGCACAGTATCTGTCCCAACACGAGCACTTGCTGCTCAGCACAGCTGCACCTTCTCCCGCAGACTCCACCGAGCTACTGCTAGAGCCAAGCGACAACAGCAAGAGACACAGTCCTAGCAGAGCCAAAGAAAATGGCTTCCATGAGCGACCCCCAGCGCCAATAGAGCCTCCAGCCAAGCGGATCTGCAccataagccccgcccccagacACAGCCCTGCCCACCCCATGCCACTCCAGATTCACCCAACCCCACCCCCTCTCCAGCACTACGCCCTGGATGACATCAGCACTCCACACCTGTACAGAGAGCCCCATCGCATTCTGGAGCTCAGAGAACTGAAGGATAGGCCGCGACTTCCAGGTTCTAACGGGGGCTACCATGAGGAGCCAGTCGACCACAGACTGACTGAGAGGGAATGGGCTGATGAGTGGAGACATCTAGACCATGTGCTGAACTGTATCGTGGATATGGTGGAGAAGACAAGACGTTCAGTGAGCGTCCTGCGGCGCTGTCAGGAATCAGACCGTGAGGAGCTCAACTACTGGCGACGGAGGTCCAGTCAGCTCGATGGTGCACGCAAGAGCGCTGCAACTCCCAGCACTGTGTCCTTCTCCAAATCGCATAGTCCTCTCTCTGCTGATGTTGTCAGCGCCGATCCTCAGCGGGAGCTCTCTCTGCATGCTGGCCCTGGCTATGTGCCTGATGAGATCTGGAGGAAAGCTGAGGAAGCAGTCAATGAGGTGAAGCGGCAGGCAATGGATGAGGTGCAAAAGGCTGTGGCAGAGGCAGAGCAGAAGGCCTTTGAAATGATTGCAGCTGAGAGAGCCAAGATGGAAAAAACCCTGGCTGAGGCCAAAAGGAAAGCCACAGAAGATGCAATTCAGGTCATCAACGAACAAGAGGACTCCAGTGAGTGCTGCTGGAACTGTGGCCGGAAGGCAAGCGAGACGTGCAGTGGGTGTAATGCGGCTCGCTATTGCGGCTCTTTCTGCCAGCACAAAGACTGGGAGCGTCACCACCTGATCTGCAGCCCAGGCCTGCAGGCACAACCCAAAGCAGTGTCCACCCTTAACACACGCGTCCTGACCAAAGCCCCTGAGAGCGGCCCAGCCCAGAGCCCCAGCCTGGAAAAAACCTCCAACACCTCACGAGCCTCTACCCCTCCAAGCCCCTCCTCAGCCTCCACCCctgacactaacacacattaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403497.2 lncRNA downstream 4715 10966696 ~ 10984007 (-) True LOC113534445
TU29745 lncRNA downstream 54589 10928851 ~ 10934133 (-) False itcha
TU29196 lncRNA downstream 817547 10170970 ~ 10171175 (-) True G24623
TU29193 lncRNA downstream 820253 10168211 ~ 10168469 (-) True G24620
TU29190 lncRNA downstream 827481 10161032 ~ 10161241 (-) True G24617
TU29800 lncRNA upstream 21123 11021523 ~ 11021725 (-) True G25184
TU29801 lncRNA upstream 22039 11022439 ~ 11022641 (-) True G25185
XR_004579523.1 lncRNA upstream 257364 11257764 ~ 11262304 (-) True LOC117599085
TU29952 lncRNA upstream 326426 11326826 ~ 11329556 (-) True G25320
TU29951 lncRNA upstream 326637 11327037 ~ 11329556 (-) False G25320
XM_026916070.2 mRNA downstream 54558 10916042 ~ 10934164 (-) False itcha
XM_026916042.2 mRNA downstream 54558 10916042 ~ 10934164 (-) False itcha
XM_026916061.2 mRNA downstream 54558 10916042 ~ 10934164 (-) False itcha
XM_026916051.2 mRNA downstream 54558 10916042 ~ 10934164 (-) True itcha
XM_026916076.2 mRNA downstream 62245 10916042 ~ 10926477 (-) False itcha
XM_026915010.2 mRNA upstream 69485 11069885 ~ 11169050 (-) False tox2
XM_026915003.2 mRNA upstream 69485 11069885 ~ 11169050 (-) False tox2
XM_026915035.2 mRNA upstream 69485 11069885 ~ 11169050 (-) False tox2
XM_026914994.2 mRNA upstream 69485 11069885 ~ 11169050 (-) False tox2
XM_026915027.2 mRNA upstream 69485 11069885 ~ 11169050 (-) False tox2
TU29342 other downstream 498427 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 1120444 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 1269752 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 1546912 9435563 ~ 9441810 (-) False tusc2a
TU28036 other downstream 2504608 8481051 ~ 8484114 (-) False tcta
XR_003403751.2 other upstream 2238304 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 2498205 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 2631862 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 2873314 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 3050001 14050401 ~ 14058445 (-) True G27107

Expression Profile