RNA id: XM_034311031.1


Basic Information

Item Value
RNA id XM_034311031.1
length 1747
RNA type mRNA
GC content 0.45
exon number 11
gene id nme7
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20207755 ~ 20246008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGGGGTCAAAGGATCATTTCCGGGTTGCgtctaaaatttaaaagaaaagtcGATAGAGCTCGGTTTTTGTGAGATATTTCTGGTGGTATAGAAgacatttataatgaaaatttccttcatttttgacagaaattattattatactcggttaattttaatttaagaaCGTTCCCGGCATCGTttttgttactatggaaacgataattCACAAATACGCTAGGAAGACAAGCAAGTGAGCTGCAtatcaaacaacaaaacaaaccaagaCTGAGAAGCTAGCTGGAAATGGAGGAGCGCTTTGCCTTTCTGACTGAGTGGTACGACCCCAGTGCTGCTCTCCTACGCCGCTACCAGCTCCTGTACTACCCTAAAGATGGCTCTGTGGAGATGTTTGATGTGAAGAACCAGCGGACCTTTTTGAGAAGGACCAAATATGATGACCTCCATCCAGAGGATCTGTTTGTGGGGAACCGTGTTATTGTCTTTTCTCGGCAACTCAACCTCATTGACTACGGAGACCAGTACACAGCCAACAAACTGGGCAGCAAGAAAGAGAGGACATTGGCTATGATTAAGCCAGATGCAGTGACCAAAGTGGGCAGCATTATTCAGATGGTTTATGATGCTGGCCTTATTCTCACCAAAGCCAAAATGACCAAGCTAACTGGGAAGCAGGCAGCGGACTTTTACATGGAACATCAGTCAAAGTCTTTTTTCAAtaaCCTGGTGCAGTTTGTGAGCTCTGGGCCTATAATTGTCATGGAGCTGATGGGAGACGAGGCTGTGTCTGTATGGCGGAAAGTTCTGGGTCCTACTGACTCTGGCGTGGCACGCAAAGACGCTCCAGCCAGCCTCCGTGCCCAGTTTGGAACAGATGGCACCAAAAACGCAGGGCATGGGTCAGACTCATTGGCATCGGCAGCACGgGAGTTGGAGTTCTTCTTTCCTTCAACTGCAGGTCATGGCCCTACCAATACAGCCAAATACCAAGACTCTACCTGTTGCATCATCAAACCACATGCTATCTCGGAGGCTCTGACCGGAAAGATCCTCAGCTCAATCACAGAAGCTGGATTTGAGATCTCTGCATTACAAATGTTCAACATGGATCGCGCAAATACAGAGGAGTTTCTTGAAGTCTATAAAGGCGTAGTCTCGGAGTACACAAGCATGGTGGCCGAGCTGTGTTCTGGACCCTGCATGGCCCTTGAGATTCACAGTACAGATGCACCCAGAAAGTTCAGAGAATTCTGCGGTCCAGCCGACCCAaaaggcCCACCCACGACCACCTGTCCCATAGTGCAGTGCTGAATGCTAACTCTTGTCAGACCTGTGTGATGTTAATAGCTGCTTTGTCCAGACCATTGAAATTCCAACTTGAAACAGGACCATGAAGgaagattttaatttaatcaaatatgaaataattttctttttataggCGTTTTATGCTGAACTCCTTTAGCTTTTTTACCTGAACTTTTTACCTGAACTGTACCTAGGTGCTTTAAATAACATGAGCTGCAACTGTAAGTTACACCTTACATTTCAAAGTCAGTCATCCTAAGTAAAAGGCTGCTTTGTATCCTGTATCGTCTCGGTGAACCGCACACTGCTCAGGGTTTCCGATTCTTTGTCAGTCAGCCAATTCAGGTGTGTAGCAAAAGAGCGTTTCAGCGCACAGGTCCTTGTTGACCTTTGTTCCACCTGTGTTGAATTTGTTGCCAAGGTGCAGGTGGTGTACA

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35898 lncRNA downstream 14008 20199533 ~ 20207732 (-) True G30412
XR_004579569.1 lncRNA downstream 22224 20197220 ~ 20199516 (-) True LOC117599142
TU35799 lncRNA downstream 109222 20104252 ~ 20112518 (-) True G30320
TU35741 lncRNA downstream 207735 20012425 ~ 20014005 (-) False glmnb
TU35735 lncRNA downstream 235821 19984675 ~ 19985919 (-) True G30270
TU35910 lncRNA upstream 597 20246605 ~ 20246871 (-) True G30421
TU35911 lncRNA upstream 1103 20247111 ~ 20247337 (-) True G30422
TU35912 lncRNA upstream 2158 20248166 ~ 20248509 (-) True G30423
TU35920 lncRNA upstream 68830 20314838 ~ 20315511 (-) True G30428
TU35992 lncRNA upstream 113833 20359841 ~ 20360828 (-) False pex5la
XM_026923691.2 mRNA downstream 38446 20172128 ~ 20183294 (-) True dpt
XM_026921732.2 mRNA downstream 65581 20146385 ~ 20156159 (-) True zbtb11
XM_026921212.2 mRNA downstream 79483 20112945 ~ 20142257 (-) False dipk1ab
XM_026921221.2 mRNA downstream 79483 20112945 ~ 20142257 (-) True dipk1ab
XM_034313310.1 mRNA downstream 120542 20039757 ~ 20101198 (-) False evi5b
XM_026926703.2 mRNA upstream 4107 20250115 ~ 20258553 (-) False LOC113534100
XM_034311024.1 mRNA upstream 4107 20250115 ~ 20258553 (-) True LOC113534100
XM_026943439.2 mRNA upstream 19305 20265313 ~ 20310226 (-) True tmem131
XM_026927143.2 mRNA upstream 78850 20324858 ~ 20328459 (-) True mrpl47
XM_026917435.2 mRNA upstream 113714 20359722 ~ 20429325 (-) False pex5la
trnap-cgg_1 other downstream 835227 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 841228 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1404542 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1405410 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1414990 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1217853 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1217853 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1217853 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1217853 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1217853 21463861 ~ 21531428 (-) False raver2

Expression Profile