RNA id: XM_034299696.1


Basic Information

Item Value
RNA id XM_034299696.1
length 4972
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC113532783
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10552911 ~ 10743445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGAGCTGGAACTGATATAGCTGTCAGCATGACATTTCTAAATCCATCTAAAAAAAGAGAATTGATTCCAATCAGCTTCCACTTTCTTCACATTGATGGCCCCTTCAAAAGGTAACAGTCAGCTACAAATTGCAATTTGGGCTTCTCCTTCTTCCAAGATGAGTTTGCAGCATATCGATTGTGCTTACAAGAGATCTCAAAGGATTCCTGGACAACAAAATGAAGTGGTATTCTCCAGACGAAACAATGCCTGTTAAAGAGTGCTACTCAGCCTGTAACTCTGTCAGaTGGCCTTCTCATTTTCCATCAGTTTCTCTTGGAGACTGTAGGAGGTCCACTGTGGATGCAGCTAAAACCTTATCAAAGAAAGCTATGGCACAACACCAAACATATACTGCTCTGTATTCAGTACATTATATGTTTCATGCAACCAGAATTTCAGCATCTCCTAATATGTATAAGAATTTACTCAAATGAATAACTAATTGTTTCTCTGTTTGAAGAGTGAGCTCCATATCTACATATGGTATGGAACAACACAAATGGCCTATTTTGACATACCTTTTCAAAAATcactaaaaaattaaaacaacattaCTATCAGTTCTGTTTCTGTGACTTAGAAGAGCCGCATTAGGATTACCCAGGTTCagtttgaccaaaaaaaaaacaaaacaaaaaaaaacattttctgcttGCCTATCCTGATTTCCAAGCATGTCTTGGTGCTCTCATATCTCCCTGTCCAAATCCTGCTTATCCCATAGAGTGCTGGAAGCAGACCTAGAACTTTGTGGCCTTGCACCTGGCACAGTGGAGTGAACTCTTCTTCCTGACACTTCACCATTCCTGAGCAACTGTGCACTAAagcaaacagataaaaaacacaaaaacttcAGGCTGCATTTCCACATTTGAAATGATGCCTCAGTCACTCTCTAGCATCTGcaagttttaaaaaaggataaatagTTATTGGATGTATTGAATCCAAACCCATCTTATTAAAGCACATTTCTTAATTGTGTTCACAATCTTTGCCACATGTAGAAGACTGAGAGTTGTCTAAAATGGCTGCACAGTGGAGACAAAGGACAAATGCTCTGGTTGTGACTCTTGGAATGCTGCACTGCTGGGGATTGGGGTCTTGTTATGATGAGAGGACTAGCATTCTCACAGAGGACAAATCTCttgaaaaacatccagtgaccCATGAAAGAGTGAAGAGAGGATGGGTGTGGAACCAGTTCTTTGTGGTGGAAGAGTACACAGGAACAGAGCCACTTTATGTTGGAAagATCCACTCAGACTCAGATGAAGGTGATGGCTCTATCAAGTACACCATATCTGGTGAAGGCGCAGGGACTATCTTTATCATTGATGAGGTCACAGGGGACATTCACGCCACCGAGAGGTTGGACCGTGAGGAGAAAGCCTTCTACACATTACGAGCACAGGCTCGAGACCGCCAGAATGACGCCCCACTCGAACCCGAGTCCGAGTTTGTCATCAAGGTCCAGGATATCAATGACAGCGAGCCCAAATTCCTGGAGGGGCCATACATCGGAAGTGTGGCTGAGCTGTCTCCTATTGGTACATCAGTAATGAAAGTGATGGCCTCAGACGCAGATGACCCGACCTACGGGAGCAGTGCCAGGATAGTGTACAGTGTTTTGGATGGAGAAAAGTTCTTCACTGTTGATAGACAGACTGGAGTGATTCGGACGGCCGTAGCCGATCTTGATAGGGAGACGCAGGACCGTTATGAGCTAGTTGTCAAGGCAACAGACATGGCAGGCCAAATGGGTGGTCTCTCCGGCTCCACCACAGTGACCATAGTGATCACGGACGTTAATGACAACCCTCCACGTTTCCCTCAGAAGATGTGTCAGTTTTCAGTTCCAGAAGGGATGGCAGTGGGCACATCGGTGGGCCGGGTGATGGCCACAGATGCAGACATGGGTGAGAACACGGACATGAGCTACCTGATTAAAGACGAGGAAGGAGGAGAGCTCTTCAGAGTCTCcactgacacagacacacaagaaGCCATCATTATCATCAAGAAGCCTCTGGACTATGAGAAGAAACGCACCCATAATGTGGTGGTGGAGGCAGTGAATAAGCATGTGGATCCACGCTTCGTGGACCTGGGCTCTTTCCGGGACCAGACCATTGTCAGAGTCAGCGTGTCAGATGTGGACGAACCTCCAGTCTTCTTTCCACCCACCGGAGCTATTATGGAAGTACAAGAGGATGCCAAGCAAGGGACCCTTGTGGGCTTTGTTACAGCCAGGGACCCAGACGTGGATAATGTCCCTCTTAGATACTCAATAGATCAGAGCACAGATCAGGAGCAAATCTTTAACATTGATGCAGTGACTGGTGCAATCACCCTGGGGAAGATCTTGGACAGGGAAACAGCGGGCTGGCACAACATCACAGTGACAGCTGTAGAAAGAGATAACCAGTCCATGGCTTCTCAGACTTCAGTTAGCATCCGTATTCTGGATGTGAATGACAACCCACCTGAGCTGGCCACCCCATATGAAGCCTCCATCTGTGAAGATGCAAAACCTGGGCAGctCATTCACACCATCAGCGTTGTGGACCGTGATGAACCTCAGTCGGGCCATCGCTTCTATTTCACACTTGCTCCCGAAGCCTCCAGCAACCGCCATTTTACACTGTGGGACGTTAAAGACAACACAGCAGGCATTAGAACCCAGCGATCGGGTTTCAACCGACAGGAGCAGAACATCTACCTGTTGCCTATCCTGGTTGTGGACAGCGGGCCTCCAGCTCTTAGCACAACTGGCACACTTACCATCCATGTGTGTGGCTGCGACACACACGGAGTCATCCAGTCCTGCAACGCCACAGCCTTCAGCATGGGCACAGCCCTCAGCCCGGGAGCTCTCATTGCTCTGCTCGTCTGCATGCTCATCATCATCGTCATTGTGCTGCTGATTGTGACCTTAAAGCGCCACAGGAAGGGTCAGCGCATGTGCGAGGAAGAGGAAGACATGCGAGACAACGTCATCAAGTATAACGACGAGGGCGGAGGTGAGCAGGACACACAGGCTTACGACATGAGTGCACTGCGCAATCTCTACGACTTCCCCGAAGCCAAGAGCTCTGAGTCACTTCCCAAGCGCATCCAAAACCCTGTGAACTCTGACAGAGAGGTAGCTGATTTCTCCCTGTTTAAAGGCTACATCCGGAAGAAAGTGGAGCAGGCGGATGCAGACCCATCTGTGCCTCCATACGATTCATTTCAGACGTACGCACTGGAGGGCAGCGGCTCACCAGCACTCTCACTAAGCTCCATCCACACTCTGTCCACTAGCTCAGAGCAGGACTTCTCCTACCTTAGGGACTGGGGGCCTCGCTTCAGGCAGCTGGCAGGATACTATGCCCCGGCACAGCCTGATGAAGAGGGGTCCTAGCACTGCCTGCCATCCTGTGCCTACTGTGCCAAGCTAACAACACACTGCTGTTCCATAGACACTGCTCAGTCCTGGAGCTGCCCACACTCCTTTAACACCCACTCTCCTCCATCACTGGATGATCACTGGATCCTAGTCTTTTCTGGACATTTTAATACCACTCTGTAAAAGATACAGACAGTTTGCCTTTGCAAAAGATTAAAAGGTGGAGGATGAACAGGCCATGAGTGAGGAGTTGGGCGGTACTCCAACAAACCTAGCAGAGTGTGAAACGAGAGCTGGACTGTGCTATATGCACAGGGCTAAACCCACATTGTTCCCTATCTGAAacattttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgcggtgtgtgtgtgcatgtgtgtgttctttctttcctcttttggtGAAGGCAAAGACTACCGATTCATTGGGAGATCCAGAATGGGACACCATGCAGCAGTACTAGGGAGGTCATTTTCTAAGCCAAGACAAATTATTCCCAGatgaaaatatgtatttatctaaaaaaagaagatatttatgtatttattatttctatttatttatttatttatttctcctgGTTGAAGTACAGAATACCGGACTGGACTTAATTATAGAACAATATGGATGGATGATACAgactgaattaattaaaaaaactgacttTTAAAGGCATTGACATGAGAGTGCGATTGTGACTGAGAGATCTGGGCCACAGTCtttcaaaaattatttatttttcagaaacccttttttctaaaataCAGACCTGTGCTGGGAAGGGGtgtacaaatattaaatattcactcAGTCAGAGGTTTGTTTTTGTCCTATCATATGTTTCATGTATTGTGTTACTCTTAAATTGATTATCCAAGTCACATATTGTGGGCAGTCAgatatttgttttgtgtgtgtgttaattttttcttttgaagctgTATTTCAGTGGTTAATTTGGGGGGCAATAAGGGACATATGACCACGAGAGCGAAAAGTCAGATATTCCTCATTTTTTTATCagtatttacatcagtatttatatTTTGCATACATGTTCACTACAgatttgtgtctgtgttgtttATATTCTAAACTGGTTTCAAGACCAGATGATTTGATTggttttattcagtttaatcTTTAGTATTGGTTGAGGCTGATGAAGGGAAATGAGAACATGGTTAGAAGGCCTGGTTACACTAAATCCTTCTTGATCCATGATAACTGTGTTGAGGTGGTTGCTTAGAATGctttgcatttcatttaactCAGCAGTAATTAagccaatcagaatgaattTTATTCACAAGAGATTATATCTTGTCCACCATAGACAAGATATGAACTGTTTGAACATTTTTGTAAAACTAAAAAAGAACTGCCCCATGACCACTAGTGTATCCAGGCCTTAATACATATGTAGGAGGTTTTCATCACCCAAAGCCAATATCTGGAGACATTCTGTTGCCAACCATATCCAGTAACAGTGTATGGATTAAAT

Function

GO: NA

KEGG:

id description
K06812 CDH22; cadherin 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29196 lncRNA downstream 381736 10170970 ~ 10171175 (-) True G24623
TU29193 lncRNA downstream 384442 10168211 ~ 10168469 (-) True G24620
TU29190 lncRNA downstream 391670 10161032 ~ 10161241 (-) True G24617
TU29184 lncRNA downstream 400746 10151817 ~ 10152165 (-) True G24611
TU29143 lncRNA downstream 613868 9938256 ~ 9939043 (-) True G24572
TU29745 lncRNA upstream 242965 10928851 ~ 10934133 (-) False itcha
XR_003403497.2 lncRNA upstream 280810 10966696 ~ 10984007 (-) True LOC113534445
TU29800 lncRNA upstream 335637 11021523 ~ 11021725 (-) True G25184
TU29801 lncRNA upstream 336553 11022439 ~ 11022641 (-) True G25185
XR_004579523.1 lncRNA upstream 571878 11257764 ~ 11262304 (-) True LOC117599085
XM_026940250.2 mRNA downstream 213584 10335393 ~ 10339327 (-) False gcnt7
XM_026940181.2 mRNA downstream 213584 10335393 ~ 10339327 (-) True gcnt7
XM_026925110.2 mRNA downstream 293692 10241254 ~ 10259219 (-) True eya2
XM_026925117.2 mRNA downstream 293693 10241254 ~ 10259218 (-) False eya2
XM_026923241.2 mRNA downstream 333530 10213908 ~ 10219381 (-) True LOC113532087
XM_034312332.1 mRNA upstream 189038 10874924 ~ 10885023 (-) True znfx1
XM_034300796.1 mRNA upstream 202526 10888412 ~ 10903945 (-) True ddx27
XM_026937005.2 mRNA upstream 220309 10906195 ~ 10910484 (-) True snrpb
XM_026916070.2 mRNA upstream 230156 10916042 ~ 10934164 (-) False itcha
XM_026916042.2 mRNA upstream 230156 10916042 ~ 10934164 (-) False itcha
TU29342 other downstream 62616 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 684633 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 833941 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 1111101 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 2068730 8481051 ~ 8484181 (-) False tcta
XR_003403751.2 other upstream 2552818 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 2812719 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 2946376 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3187828 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 3364515 14050401 ~ 14058445 (-) True G27107

Expression Profile