RNA id: XM_034313200.1


Basic Information

Item Value
RNA id XM_034313200.1
length 9318
RNA type mRNA
GC content 0.43
exon number 26
gene id slc12a5a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10044762 ~ 10198391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGCTTCTAGTTGGAGATGGAAATCCCAAGGAAAGCAGTCCTTTCATCAACAGCAGTGATCCAGAGAAGGGCCAGCAGTATGATGGCAAAAACATGGCGCTGTTTGAGgAGGAGATGGACACTAGTCCCATGGTATCGTCTCTGCTCAGTAGCCTTGCCAACTATTCCAACCTGCCTCAGGGCAGCAAGGAACACGAGGAAGCTGAAAATAACGAAGGCTCCCGCAAGAAGCCTGTACAGGCTCCACGGATGGGCACGCTGATGGGAGTATATTTCCCCTGTCTTCAGAATATCCTAGGTGTGATCCTGTTTTTGAGGATGACCTGGATGGTGGGAATTGGAGGAGTCATCGAGGCCTTCATCATCGTGCTTATGTGCTGCTCCACGACCATGTTAACTGCAATTTCGATGAGTGCCATTGCCACCAATGGAGTAGTACCAGCTGGAGGCTCCTACTACATGATCTCTCGTTCCCTTGGCCCTGAGTTTGGTGGCGCTGTGGGGATCTGTTTCTACTTGGGGACCACCTTTGCAGGAGCCATGTACATTCTAGGCTGTATTGAGATCTTACTGATCTACATTGTGCCACAGGCAGCCATTTTTAAGATGGAGGATTTGGAGGGCCCAGAGGCAGAGGCAGCCATGTTGAATAACATGCGAGTGTATGGCACCTTGGTGCTGACCTTCATGGCCGTGGTAGTGTTTGTGGGTGTGAAGTACGTCAATAAGCTGGCGTTGGTTTTCCTGGCCTGCGTTATATGCTCCATCCTGGCGGTGTATGCTGGCGTCATCAAGACTGCCTTTGAGCCACCTTTGTTCCCAGTGTGTATTCTGGGGAACCGGACTCTAGTGTGGAAAGGCTTTGATGTGTGTGCTAAAGTGATTGAGAAAGACAATATTACAGTCACTACCAAACTCTGGAGTCTCTTCTGTGACTCAGAGCTCCTCAATGCCACCTGTGACAGCTACTTCACCAACAACAACGTGACAGAGATACAGGGCATTCCTGGCATCACCAGTGGCATTCTGAAagAGAATTTGTTTGGAAATTACATGGAGAAGGGTGCTTATCTGGAGAAGGTGGGCTTTCCTTCTGTGGAGGAGCCGGATGCTCTGCCCACTAACACTAAATCCTATGTGCTATCTGACATCACCACTTTTTTCACACTCCTGGTTGGGATCTACTTCCCTTCAGTTACAGGCATCATGGCGGGTTCGAACCGCTCTGGTGATCTGCGGGATGCTCAGAAGTCCATACCCATTGGCACCATTCTGGCCATTAGCACCACCTCCTTCATCTACATGtcctgtgttgtgctgtttggCTCCTGTATCGAGGGAATAGTTCTGAGGGACAAATTTGGTGAAGCAGTAAGAGGGAATCTGGTGATAGGTACATTGGCGTGGCCATCCCCCTGGGTCATCGTCTTTGGCTCTTTCTTCTCCACTTGTGGGGCGGGGCTTCAGAGTTTGACCGGTGCACCACGTCTTCTGCAGGCCATAGCCAGGGATGGGATAGTGCCGTTTCTCAGAgtatTCGGCCACGGCAAAGCAAACGGGGAACCCACCTGGGCTCTGCTTCTGACTGCCTGCATCTGTGAGAGTGGAATCCTTATTGCTTCTCTGGACTCAGTCGCTCCAATCCTCTCAATGTTCTTTTTGATGTGCTATATGTTTGTGAACCTGGCCTGCGCTGTACAGACTCTGTTACGAACCCCCAACTGGAGACCTCGCTTCAAATATTACCACTGGGCTCTGTCATTCCTGGGCATGAGCCTGTGTCTCTCGCTCATGTTCATCTGCTCTTGGTACTATGCCATCGTTGCCACGGCAATCGCCGGCTGTATCTACAAGTATATCGAATTCCGGGGGGCAGAGAAAGAGTGGGGTGATGGGATACGGGGGCTGTCCCTGAGCGCAGCACGTTACGCACTTATGAGGCTGGAAGAGGGTCCACCACACACCAAGAACTGGAGACCTCAGATCTTGGTGCTGGTCAGTGTGGATGCAGAGCAGAATGTTGAACAGCCTCGCCTGCTGTCTCTGACCAGTCAGCTGAAAGCAGGGAAAGGACTCACCATTGTGGGCACTGCACTAACTGGAACCTTCCTAGACGATCACCCTCTGGCCCAACAAGCTGAGCAGTCTCTGAAGAAGCTAATGGAAACAGAGAAGGTGAAGGGCTTCTGCCAGGTGGTGGTTTCCTCCAACATCCGCGATGCCACCTCACACCTGGTGCAGGTCAGTGGGCTCGGAGGCCTCCAGCACAACACCGTGCTCCTCAGCTGGCCACGCAACTGGAAGCAGGCTGAAGATCATCAGCTCTGGAGGAACTTCATCGAGTTGGTCAGAGAGACCACAGCTGCAAGTAAAGCCCTGCTGGTGGCTAAGAATATCGCAGCATTCCCATCAAATGGTGAGCGCTTCAGTGAGGGTTACATTGATGTATGGTGGATTGTTCATGATGGCGGCATGCTCATGCTACTGCCCTTCCTCCTGCGCCAGCACAAGgTGTGGAGGAAGTGCAGGATGCGCATCTTCACTGTGGCCCAGATGGATGATAACTCTATTCAGATGAAGAAGGACTTGACCACTTTCCTCTACCACTTGCGTATAGATGCCCAGGTGGAAGTAGTGGAAATGCATGACAGCGACATTTCAGCCTACACCTATGAGAAGACCCTGATGATGGAACAGCGCTCTCAGATCCTCAAGCAGATCAATCTCACCAAGACAGAGCGTGAGCGTGAGatccAAAGCATCACTGATAGTTCACGTGGTTCGATTCGTCGCAAGAACCCTGCAACAGTCAACACCCATCTGAGTGTGACTGAGGAAGCAGCATCCAGCAGCAAGGAGGATAAACCAGAGGAGGAGGAGCAGCTCATCCATGATATGAGCACCAACCCGCCAACACCCGCCACCCCACAGTCCCCTGCCACTGAGGTCGTGACTCCCAGCACAGCTGTCCAGATGACCTGGACTGAGGCCAAATGTGATGGAGAGCAGCCCAAACCTCCAGGAGCCAGCACACCTGGGGCCATCAAAGACCTTTTCAGTATGAAACCAGAGTGGGAGAATCTAAACCAGTCCAATGTCAGACGCATGCACACGGCTCTCAGACTCAATGGGGAAATAGTGAAGAAATCTGGGGAGGCCAAGTTGGTCCTGCTCAACATGCCTGGCCCACCCAAGAACAGGACTGGAGATGAGAACTATATGGAGTTCCTTGAGGTTCTAACCGAGGGTCTCAACCGGGTCCTCCTCGTGCGTGGTGGAGGTCGTGAGGTCATCACCATTTATTCTTGAAAGAACAGCTTGCATCAGCCCACACCCACCCCCAGCTCAACCCCACCAAATTTCTCATTCACATAGCCAACCCCAAAACATCCCCAAAACACTCCCCTACCACATCCAAGCAATATCCCAGAATTCCCTGTGCTTATCCTACCCCCATCCTAAAATGGAGCCACCACGGATCCTCTTATtactctttctccctctttaaTGAGCCCTCAGAAAGGCCCCTTTTACTCATTTTCCATTAAGTTCTATTACTGGCCACTGCATGTTCTTGGCCTACTCACACTCTTTGTTGTTTGTGATCTGATGATCTATGATTTGCCTGCCCAGTTCAGTGCCACATATGATACGAGGAAAAACTATTGATGTCGTTTCTGCTGCATTCCTGGTGTTTTCTCCAACCCCTACTTTTCCCATCCAATCAGGAGATGTTTGAGGGTTGCAGAAATACAATGGGCAAGGTTTTAGGATATATCTGCTTCCTTTAaggcttttattttttcatttttttaaactttattatttatttattaaaaaatcagAACTTGCCAGGAAGACAACAGAAGCCAGACAAGCTGAGGATCTGTCAGTCGTTACATCACTGTGATGAAGCGATGAATTTTGTGATGGACTCGGACCGAGGAGCTGACAGTGATGGTGGCACAGCACTATTTCTGCCACATTGTGGGCTGCTTTCCCAGAAGTCATGTGTCATGAGTAGGACTGACAGTCACGGAAAGAGACTTTCATGCTGAGATGTTTCAGTTTGATGTGGCCGCTTTCAACACCCACCTAGTGTGCTAGGAGAAATTCAAGGTGGAAACGCTTAGATCCCCCAGAGCGTACTGGGAAACATACATCTGTGCTCTGTTTTCTTGGCACAGTTCtgccattttatttgtgtatgtgtgtctaatTGTTTTCCTCTGTGTATGCCCTGACATTTTCACTTCTCCTGGTTGGATGTGGATAGCTACTCCCTGCCAACCACAATATGTGCCAAAACAATAGTGGGAAGATCTGTGATTTGCTGTctcaaaatgacagaaaaagaaaaacaaacaggacTTATCTGTATTAATGGAGTGTTATAAGTGAGAGGAAACCTGTAACAAGCAGAATGTTGGAAGAGGAGTGGATAAAAGTCTAAACAGTGTATAATCTCTGAGGAATTGAGAAATATTGGTTCCCTGGGATTCACTGGTGAGGAAGTGACCTTATGTCACAGGGCTGACTCTaagagtcttcaggatggatttAGGCTTCTCACTGTGGCATTGGGaagtgtactgtactgtactgtagccCCCTTCACGAGCACTCAACCTGCACTGGCAGCCACTGTGTAACAAGTGATTTAATGAGTCTGCGGattcattaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgttcgtATGATCCATCTGTGGGAACTTGAAAATTTTTTCGCTTTTTACAAACAGGAAAACATATATGtttgttacatttacaaaaagatatatataaagtatCTTTACCACTGATAAATATAATCTGTATTGGACCACATCAAAATATCTTTGTAAAAATCATAGAACTATATGATACAGATGTTGATTGTGCCATATGACTGACAATACATATCAGTTTAAACACTATTAGTTTGAGCTAACTTGAACGTACATAGGAAGAAGTAAAAACCGTCAGTAGATAGAAATGAAATATGTCCTTAAGTCCAGAAACTCCTTGCAGTATGAATGCAGTGCCAATCGTATGCAAATCGTAAATGAGTTGTGATCTAGTCGGAAATGCTGAAGGAGTTCCTTGAAAGACATCTTTTACAGTTGAGTagttaaaattcaaatgaatgTTAGAGATGAGTAAGATCTGAAAGTGCATAAAGAACTGGTTGTGCAATAGCTGAAACTGGGAGAGTCATATAATcattgcattatttatttttgtatgcagatattttatatatgtgggttttattttgtatcattttCACATAAAAAGCGGTCAGAGTTTAAGTCTATGTTTTGTTTCTGCTCAGAGTTATCGTCGCTTGCGCTTCACTAATgacaaattaatatatatatatatatagagtgtttgtgttttaaatgtttaaaatgtcccATACATTGCGAATGCTGCTAGTGTACCAATAgatatgtattgtgtgtatatacatagaACTAAAGTatttacagatataaaaatattacactgtAGTACTGAGAAGGGGTAGACATGCAAAAAATACATATCAGTGCTGGTGATTATTGCATTTAAAACAGTTCAGTTCTGTGGGCTTTCAGACCTAACACCAGTCGGCCTTTCTGTGCCAATCTAAAAGCTAAAACTAAAACTTTATGATGCcatataatattaaaacatgcagTAAAGCATGTAAGAATATGGCTGCTTTGCCGTTCTAACAGGAAACAAAGAATTCACTCTGAGCCACTGCATGCACTCTTATTTGGTTTCAGTATTAACCGCACACCGTATATAAGAGTAAATCTTTGCTCAAGTGTTGCCTGCATAGACTGAGCCTAGCATTTCAACAAGTTTCCCGAAAAAGACGATCACGAGCTTGTTTGAAAAGCTCATTTTAACTGATAATTTGATCCTTTTTATCGCTGTTTGCATGGTCCATGTATGAATATTTGTTCCAGTGgtttatattgtgtattgtatgtaGAACGTAGAAAGAAGAAACGTGGGAGGGATCTGCTAGAGCCCATGTTGCAGTGTTGCAAATCATTTAGCAGTGCTCAAAGGCAGCACGCCAGAGTGATCATGTCCCCGAGCGCTCCTGGTCGGCTGTAGCTTTGGGAGCATTATACTGTACTGTTGTGTTTTGATATTAATATAGTTAGATTAGCAGGAGACTTGAAGTATGGTATGAATGTTGTCCTTTTGACCTTGTGTGTTGTAACATGAGATTGCTTTTAGTACAAAACTGTGGTTATAGATTCATTCACTTCTTTTCAAACATTATGTGCAATACTGTTTCTCTTGGGGTTGACGTTCGTATGCATGTGAGAATTATTTTTATGTCTGCTTTATTCATGGCCCTATAGGCCATGGTGTTCATCAGCGCTCTTTGTATGCTAGAGGAGTGTACGTCACATCTGTTCTATGGTGGCTGAGACAGAAATGCACTTTATACAGGGTTGACGTTCTTTCcagcgatgatgatgatgatgatgatgatgaagatgatgatgtcattcGGGGCACCTTTGCTGTCTGAGCACGCTGGATCCTCTCAGAGTTTCGGCTTCCTCTAGTGGCAAGAGTGTGTAGTGCAGGCATGAGGAAGCGACAGTTATTCATGGTTGCAGAATGGACAAAATATGTTCTCTGCAGTTACATACTACCTGATCAAGACGGTTTTCACTTTGCTGCATGAACCTGGTGTATATTTATGTTTGCACTTTTCCTGGATCAAGAGCTCTTTTGTTTTGATTCTTCACAATTATAAGACACATgttcaaaatatatttcttgtACAAGATGCCGAATCAATGCAGTGACTCCCTCCCATTCTTCACCTGCTGCCCTACCCAACACTCCCCcaatctctctcacacgcacacacacacacacacacacaactccctCATCACCTGCCATTCTAACTTCCCCAGcactgtattaaaatgtaatcgCAGTAGACATATGATTATTGATCAAAGACTATAAACAAGCGCTTCCACTACTGGGCCTGGCTCTGTTAAAATGGACAGTGGACAAAATGTCCTCCTTCTCCACTTCTCCctcgctctttctctttgtcagAGAATTTGAGAGCGGAAACTTGCTAATATGTTGCAAGTGATGAATCAAACATTCCATGAGTCATTTGGAGAGCAACACTGTTCTTCACAGTGAGCTTTTAAGAGATATGATTTTGTCATCTTATAAATATAAAGGGCTCCAGATAACAATCCATATTTGGTTTTGAAGTGTGACAATGACCAAACATCCCTTTACAGAGACGGCTTCATTTTTGCTAACGTATTGGCCACTAATTATCATATCCTGGTATTATCCTGGGATAACGAAATATTGTATTGTTGTAAGATTGATGACAATCTCCTGTGTCTATGAATTTTGTAATTTGTGGTCTAATCTTCTGGAAATGTCATATCAGCATGGCTTCCAGTCAATTATTTCACATTATCTGGCCACATCATTTTGATTTTGTGTGCACGAACATAGCAGCACTTAGAGACATACGTGGaaaatacatcaaaatgtaAGTAACATGAAATATCAATCATTATGTTCAGAGAAGGTCTGACTGTATTGTATCTCACTAAATCAAAGATACACATTAGCATCttgctgatgaaaaaaaaagatatttccGACCACAGCAAACTCAACTCTTTGTTAATATTCATCATCTGTACTTGATCTGTACTGGTAATATAATTCTTTGGTCTTTGGAGCTTTACAATCTGTTCCAGCTATCAGCAAACATTAAACCTGAGAGTTTATTGTAAAGAAAAGTGGTCTGCTAAGATGCAGTCGTTAGGTTTTAATGCTATAGATGTTATGTCCAGCCACAGCTGTTCTAACAGAGCCAGAGCCCAGCCTTGTTGTCTTACTCAACGCATGCACGTTATCCTGAACAAGTTGATATAACTCAAtatatattgaaatgttttgtggTTCTCAGTATTACATTCACTcagtttattttgaaatgtttaatttgttatttttacaaGTTGTGTGGTGTAACATATTGTATACAAATGCTTTATTTGGGTATATCAGTAGGCTATGtagagtgaatgagtgtattGGTTACCTGAGTctatttttattatagtttCAATATAGTTatcattattttactttattactatGAATACAGAGATAACttatcaacagaaaaaaaaactgattaccAAAGTATATTTAAGTTAATTTAGacatatatctatataaatatatattattctgTTTTGAATTAAAAAGAAGCTTGATGGTCCTATTAAGCCACAGGTCACACCAACTTAATTCTACACATTTCTACTTATGCCTTAAACAGAAACACCAATTGGCAGCTATACATGAACTGAGCCCCAAAATACAcatatggtgtgtgatgtgtgtgatgtgtgtgatgcatTGCTGGAAAGCTCAGCTtggaaatgtagaaatgttagGTCAGATGATAGGTCAGatgcctttttttaatcttgttcAAACCATTAACACCTGTTCAGAACCCAGTACTAGATCAGTTGAAACACAACCACTGGTCAAGAAACTAATCCTCATTCATGGTAACCTACCACTAACCAAGTTTAAAAGTAATACAGCAAACATGCAAACAATTTAAATCtcagctgtaaataaaaaaggctATGGGAAATATCCGTTTGATTTCAAaaggtcctttttttttttgaacagtttGGCCTGGCCTAAGCCTTTACATACCAGCCAATCAGTTAAGATGAGCAAGTCAAAAGTGTGTGAAGAGGATGAAACAGGACCCATAACATAAGCAGACAGGGTTCTTCAAGcttgttttttaattcatgAACAATGTGCAatccattttgtgtaaatttttgGAAGAGAATGGatatagggaaaaaaatatacaattatgtagatgttttacagttttatttttcttggtaACAGTTATGGCAAACTGTGTTCCACTGTTTCTCAcgtatgtgcgtgtgtatgcatgtgtgcagACATACGTATGCACTAAAAGCATTAGGGACCATGGGCCAGGGTGGAAAGGATTTCTGTACATTAAAGATATGATTAGTgttgaagtgtttattttttgtgtaattgtaacttcaatattttaaagaaataaatattatatattgtgttTCAtggtacaaaagaaaaaacgCAAATGTAGTTTTACATTTCAAATGCTTTAACTCTATGGCTTCTGGCAGTTTCCCATTCCATTTTATAGATTCGTCAGCACAAAATGCAATAAACTAATACCATTTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29143 lncRNA downstream 105719 9938256 ~ 9939043 (-) True G24572
TU29081 lncRNA downstream 176484 9863367 ~ 9868278 (-) True G24516
TU29083 lncRNA downstream 176484 9863367 ~ 9868278 (-) False G24516
TU28757 lncRNA downstream 369023 9675522 ~ 9675739 (-) True G24268
TU28748 lncRNA downstream 408243 9635854 ~ 9636519 (-) True G24260
TU29184 lncRNA upstream 54637 10151817 ~ 10152165 (-) True G24611
TU29190 lncRNA upstream 63852 10161032 ~ 10161241 (-) True G24617
TU29193 lncRNA upstream 71031 10168211 ~ 10168469 (-) True G24620
TU29196 lncRNA upstream 73790 10170970 ~ 10171175 (-) True G24623
TU29745 lncRNA upstream 831671 10928851 ~ 10934133 (-) False itcha
XM_026923186.2 mRNA downstream 11312 10025424 ~ 10033450 (-) True ctsa
XM_026918173.2 mRNA downstream 38669 9994349 ~ 10006093 (-) True pcif1
XM_026918181.2 mRNA downstream 38693 9994355 ~ 10006069 (-) False pcif1
XM_026926845.2 mRNA downstream 51876 9983065 ~ 9992886 (-) True LOC113534196
XM_034310863.1 mRNA downstream 62482 9978873 ~ 9982280 (-) True ube2c
XM_026923241.2 mRNA upstream 116728 10213908 ~ 10219381 (-) True LOC113532087
XM_026925110.2 mRNA upstream 144074 10241254 ~ 10259219 (-) True eya2
XM_026925117.2 mRNA upstream 144074 10241254 ~ 10259218 (-) False eya2
XM_026940250.2 mRNA upstream 238213 10335393 ~ 10339327 (-) False gcnt7
XM_026940181.2 mRNA upstream 238213 10335393 ~ 10339327 (-) True gcnt7
TU29080 other downstream 176484 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 325792 9715527 ~ 9718970 (-) False tnnt2b
TU28673 other downstream 602952 9435563 ~ 9441810 (-) False tusc2a
TU28035 other downstream 1560581 8481051 ~ 8484181 (-) False tcta
TU29342 other upstream 392113 10489293 ~ 10490295 (-) True G24760
XR_003403751.2 other upstream 3141524 13238704 ~ 13238806 (-) True LOC113537313
TU31648 other upstream 3401425 13498605 ~ 13499984 (-) False slc5a8l
TU31814 other upstream 3535082 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 3776534 13873714 ~ 13907189 (-) False lhfpl4a

Expression Profile