RNA id: XM_026924570.2


Basic Information

Item Value
RNA id XM_026924570.2
length 1456
RNA type mRNA
GC content 0.48
exon number 4
gene id im:7152348
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19372430 ~ 19376164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCTGTGCCACTCTGTATGTCATGCAAGAGATCACCACCCCTCCCACTACTCCACGCAgcctttaaaaacacacaccaggcAGTTGCACCGACAGCAGAACTGGTTCTTCCTCTCAGACTCACACACTGTCAGTCACTCGATTAAGCAAACAGCTGCAAAGGAGAAAGAACTACAAGCACCTGACAGTCAGCTGGTATAACAGAGCTATCTCGACTAGAGGAAGACAAGTAAAACAGACACACCATTGcacctgtgaaaaaaaattcagaccaCAATTCTAATTAATCACTGACTAGGACCTACATAAACCACAACATTCTTTATTGTGGGACATATTCCAACTGGACCCTCATTCAATTCCTATCCTGCACTTACTGACTTCTCTTGGTGGGCTGGTGACATCCTTGAAGGATCTGAATAACCCATTCATATACACTcctcacacattctctctcgGTGACTGCCTCTCGTGCTCTGTGCCATGGTACTGATTGAAGATCACGAGTGTGGTGTGTGCTATGAGCGCTACTCCCGAAGCAAACATGTTCCCCGAGTGCTCTTCTGCAACCACACGTTTTGCAGCCCTTGCCTGGAGACCATGGCCAAACAGCGGGGCGGCATGCTGAGCGTCAGGTGCCCGCTGTGCCGCCAAGTGTCCTGCGTTCGCCATGGTCTCACGCTGGAAGAGGCACTGTGGGTCAACAGCCGCCTGTGGAACTGCATATCAGAGGCTCAAGAGCAGGAAGTAAAGGAGGAGGatttggaagaagaagaaaactgtgaggaagagagaaggagTGCTGGTGCAGAGACAGAATTTCCAATCCAATGGCTGAGGCCATCGTCCCATCATGACCGTCTCAGACTACGACTCCCAGGGTTCCTGAGGAGAATGATTGTCCCCAGGCAGTCGCAGGAAAGGATAGTCCCTGGATATAACGTGAGAATGAAATCGTGGCGAAGACTGTTGGGGGAGGAAATGGCTTGAACTAGGTTTCGCCAGACTGAACTCACCACTCTGCATGATGAAGTGTCACTCTTGTTTTGCCATTGTTATTGAAGACATCGTGCCACAGGCGTAGTCAGTAGTCCTGGATTACTAAAAGATCAGGAGCCTCAGCATGCAACACTGAGCAGGAGTGAAAAACTGCAACATTCTCCTGACTGTGTTTCTTGAACTGTGATTTTCGCATGAAGGCTTTGACCAGTCTATCTGCGGGGATCTTCTCATTATCCATTCCATCCATAATCCTCTACAGCTGCCGTGACGGGATCTGTTTCAGCTGTTCCAACACAGACAGGGGGCAAAGTAGAAAAAGAGTGGGAGTCCCAGACTGCAATATGAGGTGGAACAGATGGCTTCATGAGACAGACCGCTTTCCTTTCACAAACTGCACCCCAACAACTCCACACAAACCCTTTAACTTATTATTACTGttcatatttatgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35173 lncRNA downstream 113252 19258950 ~ 19259178 (-) True G29793
TU35046 lncRNA downstream 322695 18984062 ~ 19049735 (-) True G29678
TU34949 lncRNA downstream 476625 18890717 ~ 18895805 (-) True G29614
TU34947 lncRNA downstream 485419 18883984 ~ 18887011 (-) True G29612
TU34889 lncRNA downstream 565680 18794032 ~ 18806750 (-) False LOC113537624
XR_004577309.1 lncRNA upstream 7150 19383314 ~ 19385251 (-) True LOC117596148
TU35304 lncRNA upstream 28244 19404408 ~ 19404621 (-) True G29905
TU35482 lncRNA upstream 161757 19537921 ~ 19540054 (-) True G30062
TU35476 lncRNA upstream 177014 19553178 ~ 19555762 (-) True G30059
TU35494 lncRNA upstream 190119 19566283 ~ 19566511 (-) True G30070
XM_026916667.2 mRNA downstream 395493 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 395501 18970308 ~ 18976929 (-) False zgc:103559
XM_026916676.2 mRNA downstream 395809 18970308 ~ 18976621 (-) False zgc:103559
XM_034310739.1 mRNA downstream 402979 18964291 ~ 18969451 (-) True agxta
XM_034310741.1 mRNA downstream 402983 18964293 ~ 18969447 (-) False agxta
XM_026923318.2 mRNA upstream 167988 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA upstream 167988 19544152 ~ 19552693 (-) True bcl6aa
XM_026918863.2 mRNA upstream 580553 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA upstream 580553 19956717 ~ 19983297 (-) True tbc1d23
XM_026921581.2 mRNA upstream 609860 19986024 ~ 19999160 (-) True tomm70a
trnap-ugg other downstream 555232 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 556100 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 565680 18794032 ~ 18806750 (-) False LOC113537624
trnae-cuc_6 other downstream 795135 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34546 other downstream 1299521 18070987 ~ 18072909 (-) True G29279
trnap-ugg_1 other upstream 4277 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-cgg_1 other upstream 10278 19386442 ~ 19386513 (-) True trnap-cgg_1
XR_004580158.1 other upstream 2087697 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 2087697 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 2087697 21463861 ~ 21531428 (-) False raver2

Expression Profile