RNA id: XM_026924805.2


Basic Information

Item Value
RNA id XM_026924805.2
length 3479
RNA type mRNA
GC content 0.37
exon number 6
gene id tgfa
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16074046 ~ 16083778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctCACTCTCATAAACGCGCAtacatgcacgcgcacacactctctcataaACGcgcatacatgcacacacacatactctcataAACGCGCATACATGCACGCGCGCACAAAAGTAATCAAGTGTGTGGAGGATGCGCCCTGCGTCAATTGCTTACAATTGTCTTCAGCGTTGGTAGTCCGGATCTAGTGGGGCAAGCGTCTGTTGCATGTAAAGAGTCTAGCAGAGCACTTCATAAGTTCATGTTTAAGTAAATCGACGCGTGGCTTATTTGAAGGACGCTAAACCACCATTTAATATCCACTGGTATGGAATCAAgcttaaaattgttttttttcgaTATTACTTTTGACAAGCAAACATTTGGGCCTTCACTGGAGGACAAACGTACTTACCTTCCAAATATACTTTAACTTAAGACGCCACGGATCCAAGGGAACACGTTGGAGCCTTATAATGATGTATCGCTCTTTTTGGGATACGTTATTCCTCCTTAGTGgctatttatttacatacagcCAAGTGCGAGAAAATGCTActtcagcagcagcaacaatGGTGATGACTCCCACCACTATAACTGCTACCAACACAACAGCAGTGTCAAGTACTGGTAGAAGCAAGTTCCTAGCAGCAGCAGTCCACTCTCACTTTGCTGACTGTCCTGACTCTCACAGCCATTTCTGCTTCCACGGCACATGCCGCTTCCTCATCCAGGAGGAGACaccagcgtgtgtGTGCCTCCCAGGCTTCATAGGTATGCGTTGTGAGCATGCAGACCTGCTGGCAGTGGTGGCAACCAACCAGAGCCAGCAGACACTGGCCACCATATTGATGCTGGGCATATTGGGCAGTGTCCTGCTTGTGCTGCTTTGCACCATAATAAACTTGTGGTGGAAGCGGGGCAGATGTAGGCGAGGACCTCTGCTTTCCTGTTTGTCAAAAAAACCAAAGGGCATCGTAAAGAGTGGGACGTCCTGCTGTCACTCAGAGACAGcagtttgaaatgaGTCCAGTGTAGTGCTGTTGGTGTACCTATGTTCTCCATTCTGCCACCTGAAATCCCAAGGATTATCCCTGGATTAAGCTACTGACTCATGTCAGCATGCTGAGAACCAAACCAGATGTGGAATTCAGAACTTACATACTCAGTGGAAGTAAACTTAGcctttcagtttttatttttttgtggaatgtaaaactaaaatgatggaAGACGGTTTATTTCCAATTTACGGTAACTTCCCAACACAGATATTGATCTCCTGGACTTTCATACTATTGTGTTGGAACAGATTACAGGAGTGAAGATCCAGTCAGACTTAAGATCCTGTGAGGAAAAGCTCTGCAGTGAAGGAGTAACGGACTAGTGCTTAAAGCCTGCTCAGCTGGATATGAAAAGTAAGAATGAGATTCAGaactctgaaaaaaaatcatgaattaaTGTGCTTAGGGTGCTTGGACATTCTCGAGACACAGAGAACTATGTTCATTTTGACATGAGAAGTGGACAGCATGATAAGAGGATGATAAGAGGAATATTTTGATTTTTCAAATCACAAAAAAGCTTGGAAAAACTAACAAAATGTTTATGGCATGTGACACCAAAAGAGAGATAGTACTTGTCAAAAGTTTGGATACACCTACTTGTAGAaagattttgtttaattttccacattaggactaaaataacaaaaaatccaaaaatgttGAATTTTACAGGGAACAAAAAttgctaaacaaaaaaaaaaaaaaaaaaaaagaaaatagttaTTAACAAGCTTCATGAGAAATCTGTGAAGAGTTGGGTTAATTTCCAAGAGTTCCCATGTATGCTGAGCAGTTATTGGCTGTAGTTTCtaagttttaaatgaaaactatttatttttgcatttgaaaCAAATTTCAATCATATGCCTTTAGATATCTTTTAAGATTATCAAGACCAGTTAcatgtgtccaaacttttggtGTGTGGTGTAATGGAGAtacagttttaaatgttttagttaTTCAGGAGTGTCACACGCAGTTAATTGTTCTAAGAATGGAAGAATAATCTTAGATATCTTGGATCTTAAATGATGATAATCTTGGATGATAATAATGGACGAAGAAACAAGGTTTTCAGagtatttttcaaatatattaatatattcaataatgatatatttacaaattaacagTCATTGGCAGGCTTCTGATGAAAACAATTGGGTCTTGGAAACCAGAGGGTATTTTATGCTTatgttctttattattattgcacttgAGATATTCTTATTCACAGATTCCATTTAATAacataagtatgcatacttgcCTCACATACCCTTGAGTTGAGCTTTCTCCTGTTTCAGTTCTTGATAGTGGAAAGATCATTGTTACAAGGTTTTTGACAATATTGTATAACTTCTAAAATCAGACTCACAACATGTATGGTTTTGGCAGAAATTGCATTAATGATTGAAAGTTTGGGTGTGCACAAGTGTGTTTACACatatgcactatacactgttGCACCGCACTCTTACCCTGATGGCAATAGTAAAATAGACACTGGCTCTTTTCTGGAAAACAAAATCTGAAACGTGCTAAACAGGCCCAGTCCTTAGTGGGGCCTGATTTTGATTAAAGAGTGTTTGTAGATATAATTGTGATAAATCCACTAAATTCACTTCACAAAGCACTATGTACATGTTCACTTCTACATATAatccacacacatgctcacactcaACTATGTATACACATATAGACAGCCGTGACGGCTTTGTTTCTTATTTAAAGcttgttactgtttactgcaaatCTATTCCGAAAATTTTAGACTCTGAGTTTTAGAAAGTTTTAAACCTTGTTTAACATTGTGTATGTTGTCTTATTGACCCTCAAGCCTTTTGTCATTGTTCTTATGTAAATGTATGGTGACTAGGTGCATCCAGATACTGGTGAAACCTTGATACTGTTTTATTCAGTCATCGGCTTTTGCTGAACCCTAAAACTGCCCAATGACACAGTAGATGCAAACAGTCCTGCTTTATGCACAAGATGTTCCAAAATTAGAAATCATTAACACGAGTTACATTACTGTAGTAATAGTTCACAGTTTTAGGGAAAATTGATTGAATAAGACTTCATCCAAAGGACCGAGGGAGAGAGTGTTGCTGGCATTGAGCACTTTATATAAATGATGTCACTTAAAAAAACCTGATTATTTACTGGAGAAAAAATTCTAATCCAAActgaaagtaaagaaaaaaaaaaaagatgttataTTTAACATGAGCAAATACAGGAAATTAATTGGatattaaaggggaaaaaagtggttGCAAGCAAATGAATACTAATTGTGAGAGATGATTGAGATCTCATCTCTTCTGCTCTGTCTATTTGATCTATTTGATCatgtaaatctgtttattgGTTTACTTTGACACATTGTTTTTGTTatccagtatttaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08774 TGFA; transforming growth factor, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33314 lncRNA downstream 28371 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA downstream 34253 16037983 ~ 16039793 (-) True G28258
TU33280 lncRNA downstream 140188 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 285893 15786853 ~ 15788153 (-) True G28207
TU33217 lncRNA downstream 348590 15720767 ~ 15725456 (-) True G28191
TU33349 lncRNA upstream 38953 16122729 ~ 16122949 (-) True G28278
TU33332 lncRNA upstream 42128 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA upstream 42150 16125926 ~ 16126299 (-) False eif4enif1
TU33409 lncRNA upstream 97299 16181075 ~ 16181718 (-) True G28325
TU33415 lncRNA upstream 112798 16196574 ~ 16196867 (-) True G28331
XM_034300875.1 mRNA downstream 17359 16047993 ~ 16056687 (-) False entpd8
XM_026915737.2 mRNA downstream 17366 16047993 ~ 16056680 (-) True entpd8
XM_026913026.2 mRNA downstream 49577 16011998 ~ 16024469 (-) True fkbp5
XM_026930718.2 mRNA downstream 98062 15960164 ~ 15975984 (-) True LOC113536636
XM_026930704.2 mRNA downstream 122559 15935781 ~ 15951487 (-) True LOC113536633
XM_026916183.2 mRNA upstream 23053 16106829 ~ 16119848 (-) False patz1
XM_026916175.2 mRNA upstream 23053 16106829 ~ 16119848 (-) True patz1
XM_026916190.2 mRNA upstream 23053 16106829 ~ 16119847 (-) False patz1
XM_026921753.2 mRNA upstream 42054 16125830 ~ 16135715 (-) False eif4enif1
XM_034297701.1 mRNA upstream 42054 16125830 ~ 16135689 (-) False eif4enif1
TU32920 other downstream 604817 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 613045 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 775027 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1198056 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1189179 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1429936 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1865381 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1987211 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2493448 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile