RNA id: XM_034298022.1


Basic Information

Item Value
RNA id XM_034298022.1
length 1672
RNA type mRNA
GC content 0.43
exon number 3
gene id ngfb
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13532981 ~ 13544134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCACTCAGACAGACTCCATACTCTAACTTTCACAGCAATCTGTTTCTCAGCCACTACAGAGCTGTGTGGCACTGGATGACAGAAGGATTTGGTTTTCCTGACCTGGAATTTGGGATTAAATGGCAGAGTAAAGTTTGGAATTTGCAAAATTCAGAACGCTGGAATGTCAACAGCTCACATTCAGCACTTTGGAAAGTGTCAGAAGGGGACTGACAAGAACTGCTGAATACTGGGAGAAAGAAATGTGAGCAGAGAGCTTGTAGGAGCTAATGACTTGACACTGGCTGCTCAGACCATGATGAACCCCCAGTACTCCACCTGAGGTCAGGCAGGAAAGACGAGTTCACCTGGACACGTCTCACAGGTCCTGGTGTGCCCATGCGGTGGTCCATGTTAGCTCTGCTGCTCCTGTTCTGCAGCCACAATTTGGCACTGCGAGCGGGTGATATCTGCCCACAGGACAGCAACCATGAGCAGACAGCTGACcccacgcccacagtggacccCAAACTCTTCAACAAGAGGCGCTACAGGTCGCCTCGCGTGCTTTTTAGTGAACAGCCCCCTGATTCAGAGCCTGCAGAACACCAGGGATCAAATGACAGGACAAAGAGGCGGGCAGGACAGCCACAGAATCGTGGCGTGTActcagtgtgtgagagcgtCAGCTTCTGGGtgggtaataagacaaaagcaACGGACATCTCAGGCAACGAGGTAACTGTGCTGCCTGATGTCAACATCAATGACGTCAAGAAAAAGCAGTACTTCTTTGAAACGATGTGCAGCGTGGCCAGAACCGGGGGCTCTGGGTGTCTGGGGATTGATGTGCGCCACTGGAACTCATACTGCACCAACTCCCACACATTTGTGAGAGCATTGACTTCTTTTAAGAACCTGGTGGCTTGGAGACTTATTAGGATCAatgtagcctgtgtgtgtgtgctcagccGCAAGTCGTGGAGACAATGACAGTCTGTCATATAAAAGTTGACTTGTATGTTGATGTCATTGTATGCGTGATATTCCAAACCCagtaacaattaaaaaaacccCATCAAATAAAACCATCAATAAAAAGTTTATGAACAAGGCATTAATTTGATATGCCTTATTACTATCAATCATTTTATGGCCTTATGAGAGTCTATATCAAGTCATATGTTGAAATCTGTAGCAGAAAATTAGTATCCTATTATTTTTCATGATGGACATGCTTCGTTTACTTTGCTGACCACAGAGAATACAGAGAACGAAAATGCTTGTTTATGATGACTGCATGTGTTATGcatattttgttattgttattgctattgttatttattaaatctggagcattattatttttcagtgtattgTGGGCTTAGTGATGAGATTTATTAAATGTGAGACTGAGTTCCAGTTCTATGCATATTAGATGAAAAATATTATGATGTTATAATACTACAGCACAGGTGCAATTAagaattattttcaaatattttcctGGTTTATtggttgaggttttttttgttttgttttgttttaaagcttCTGACCTGTGGACCATGGAACCATGTGTGGGGCACACTAGACATGTACCAGGCACATCAAAAAATGTCTGGTGTGTGTCTGCCTCAAAATATGACCAACACATGTTAAGCGACTCTCCAGGAGAGAAAATTAAACTT

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31647 lncRNA downstream 37120 13493512 ~ 13495861 (-) False slc5a8l
TU31421 lncRNA downstream 356822 13175077 ~ 13176159 (-) True G26613
TU31418 lncRNA downstream 363319 13169253 ~ 13169662 (-) True G26610
TU31379 lncRNA downstream 426895 13104457 ~ 13106086 (-) True G26585
TU31363 lncRNA downstream 462158 13070595 ~ 13070823 (-) True G26570
TU31828 lncRNA upstream 97030 13641164 ~ 13646894 (-) False fkbp11
TU31831 lncRNA upstream 103313 13647447 ~ 13694820 (-) False G26970
TU31830 lncRNA upstream 111338 13655472 ~ 13694820 (-) True G26970
TU31846 lncRNA upstream 139989 13684123 ~ 13685782 (-) True G26985
TU31888 lncRNA upstream 244659 13788793 ~ 13791366 (-) True G27016
XM_026914240.2 mRNA downstream 2346 13516180 ~ 13530635 (-) True tspan2a
XM_026921607.2 mRNA downstream 30811 13493512 ~ 13502170 (-) True slc5a8l
XM_026926108.2 mRNA downstream 39722 13490194 ~ 13493259 (-) False si:ch211-105j21.9
XM_026926098.2 mRNA downstream 39722 13490194 ~ 13493259 (-) True si:ch211-105j21.9
XM_026926279.2 mRNA downstream 281070 13234936 ~ 13251911 (-) True ppm1j
XM_026922234.2 mRNA upstream 82834 13626968 ~ 13629546 (-) True rplp2
XM_026922243.2 mRNA upstream 88168 13632302 ~ 13634744 (-) True rps26l
XM_026917278.2 mRNA upstream 96247 13640381 ~ 13647177 (-) True fkbp11
XM_026917285.2 mRNA upstream 96247 13640381 ~ 13646612 (-) False fkbp11
XM_026918474.2 mRNA upstream 163320 13707454 ~ 13727074 (-) True acvr1bb
TU31648 other downstream 32997 13498605 ~ 13499984 (-) False slc5a8l
XR_003403751.2 other downstream 294175 13238704 ~ 13238806 (-) True LOC113537313
TU29342 other downstream 3042686 10489293 ~ 10490295 (-) True G24760
TU29080 other downstream 3664703 9863367 ~ 9868278 (-) False G24516
TU28828 other downstream 3814011 9715527 ~ 9718970 (-) False tnnt2b
TU31814 other upstream 88128 13632262 ~ 13634652 (-) False rps26l
XR_004579719.1 other upstream 329580 13873714 ~ 13907189 (-) False lhfpl4a
TU31994 other upstream 506267 14050401 ~ 14058445 (-) True G27107
trnae-cuc_5 other upstream 848146 14392280 ~ 14392351 (-) True trnae-cuc_5
XR_003403256.2 other upstream 1328814 14872948 ~ 14875990 (-) False pxmp4

Expression Profile